| cellular amino acid metabolic process | GO:0006520 | 225 | 0.224 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.168 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 314 | 0.166 | |
| cellular protein complex assembly | GO:0043623 | 209 | 0.120 | |
| small molecule biosynthetic process | GO:0044283 | 258 | 0.093 | |
| alpha amino acid metabolic process | GO:1901605 | 124 | 0.083 | |
| regulation of biological quality | GO:0065008 | 391 | 0.062 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.059 | |
| sulfur compound metabolic process | GO:0006790 | 95 | 0.059 | |
| cofactor metabolic process | GO:0051186 | 126 | 0.049 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.048 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.047 | |
| cellular modified amino acid metabolic process | GO:0006575 | 51 | 0.046 | |
| response to oxidative stress | GO:0006979 | 99 | 0.045 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.043 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 181 | 0.039 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.039 | |
| purine nucleotide metabolic process | GO:0006163 | 376 | 0.039 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.039 | |
| cellular amino acid biosynthetic process | GO:0008652 | 118 | 0.038 | |
| cell communication | GO:0007154 | 345 | 0.037 | |
| single organism catabolic process | GO:0044712 | 619 | 0.036 | |
| organic acid biosynthetic process | GO:0016053 | 152 | 0.036 | |
| response to chemical | GO:0042221 | 390 | 0.034 | |
| vacuole organization | GO:0007033 | 75 | 0.033 | |
| cellular response to oxidative stress | GO:0034599 | 94 | 0.033 | |
| coenzyme biosynthetic process | GO:0009108 | 66 | 0.033 | |
| anion transport | GO:0006820 | 145 | 0.033 | |
| homeostatic process | GO:0042592 | 227 | 0.031 | |
| organic anion transport | GO:0015711 | 114 | 0.031 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.031 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 181 | 0.029 | |
| protein localization to organelle | GO:0033365 | 337 | 0.029 | |
| protein complex assembly | GO:0006461 | 302 | 0.028 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.028 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.028 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.028 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.027 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.027 | |
| alpha amino acid biosynthetic process | GO:1901607 | 91 | 0.027 | |
| ion transport | GO:0006811 | 274 | 0.026 | |
| nucleoside phosphate biosynthetic process | GO:1901293 | 80 | 0.025 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.024 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.024 | |
| carboxylic acid biosynthetic process | GO:0046394 | 152 | 0.024 | |
| establishment of protein localization | GO:0045184 | 367 | 0.023 | |
| signal transduction | GO:0007165 | 208 | 0.022 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.020 | |
| nucleotide catabolic process | GO:0009166 | 330 | 0.020 | |
| ribonucleotide metabolic process | GO:0009259 | 377 | 0.019 | |
| carbohydrate metabolic process | GO:0005975 | 252 | 0.019 | |
| generation of precursor metabolites and energy | GO:0006091 | 147 | 0.019 | |
| response to organic substance | GO:0010033 | 182 | 0.019 | |
| cellular ketone metabolic process | GO:0042180 | 63 | 0.019 | |
| trna processing | GO:0008033 | 101 | 0.018 | |
| protein transport | GO:0015031 | 345 | 0.018 | |
| purine ribonucleoside metabolic process | GO:0046128 | 380 | 0.018 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.018 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.017 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.017 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.017 | |
| response to unfolded protein | GO:0006986 | 29 | 0.017 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.016 | |
| single organism membrane organization | GO:0044802 | 275 | 0.016 | |
| ribose phosphate metabolic process | GO:0019693 | 384 | 0.016 | |
| developmental process | GO:0032502 | 261 | 0.016 | |
| modification dependent protein catabolic process | GO:0019941 | 181 | 0.016 | |
| single organism signaling | GO:0044700 | 208 | 0.016 | |
| mrna metabolic process | GO:0016071 | 269 | 0.016 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.015 | |
| nucleoside phosphate catabolic process | GO:1901292 | 331 | 0.015 | |
| cellular response to organic substance | GO:0071310 | 159 | 0.015 | |
| cytoskeleton organization | GO:0007010 | 230 | 0.014 | |
| purine ribonucleotide metabolic process | GO:0009150 | 372 | 0.014 | |
| purine ribonucleotide catabolic process | GO:0009154 | 327 | 0.014 | |
| guanosine containing compound metabolic process | GO:1901068 | 111 | 0.014 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.014 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.014 | |
| membrane organization | GO:0061024 | 276 | 0.014 | |
| cofactor biosynthetic process | GO:0051188 | 80 | 0.013 | |
| regulation of molecular function | GO:0065009 | 320 | 0.013 | |
| purine ribonucleoside catabolic process | GO:0046130 | 330 | 0.013 | |
| cellular response to topologically incorrect protein | GO:0035967 | 32 | 0.013 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 203 | 0.013 | |
| protein ubiquitination | GO:0016567 | 118 | 0.013 | |
| coenzyme metabolic process | GO:0006732 | 104 | 0.012 | |
| single organism carbohydrate metabolic process | GO:0044723 | 237 | 0.012 | |
| amine metabolic process | GO:0009308 | 51 | 0.012 | |
| cellular homeostasis | GO:0019725 | 138 | 0.012 | |
| carbohydrate derivative catabolic process | GO:1901136 | 339 | 0.012 | |
| transition metal ion homeostasis | GO:0055076 | 59 | 0.012 | |
| purine nucleotide catabolic process | GO:0006195 | 328 | 0.012 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.012 | |
| purine containing compound catabolic process | GO:0072523 | 332 | 0.011 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.011 | |
| autophagy | GO:0006914 | 106 | 0.011 | |
| ribonucleoside catabolic process | GO:0042454 | 332 | 0.011 | |
| nicotinamide nucleotide metabolic process | GO:0046496 | 44 | 0.011 | |
| flavin containing compound biosynthetic process | GO:0042727 | 8 | 0.011 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.010 | |
| pyridine containing compound biosynthetic process | GO:0072525 | 24 | 0.010 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.010 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 42 | 0.010 | |
| positive regulation of secretion by cell | GO:1903532 | 2 | 0.010 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 356 | 0.010 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.010 | |
| positive regulation of cytoplasmic transport | GO:1903651 | 4 | 0.010 | |
| ribonucleoside metabolic process | GO:0009119 | 389 | 0.010 | |
