| rna splicing via transesterification reactions | GO:0000375 | 118 | 0.999 | |
| mrna splicing via spliceosome | GO:0000398 | 108 | 0.998 | |
| mrna processing | GO:0006397 | 185 | 0.995 | |
| mrna metabolic process | GO:0016071 | 269 | 0.990 | |
| rna splicing | GO:0008380 | 131 | 0.988 | |
| spliceosomal conformational changes to generate catalytic conformation | GO:0000393 | 20 | 0.980 | |
| rna splicing via transesterification reactions with bulged adenosine as nucleophile | GO:0000377 | 109 | 0.863 | |
| generation of catalytic spliceosome for second transesterification step | GO:0000350 | 9 | 0.777 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 152 | 0.233 | |
| mrna catabolic process | GO:0006402 | 93 | 0.220 | |
| ribonucleoprotein complex assembly | GO:0022618 | 143 | 0.192 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.175 | |
| nuclear transcribed mrna catabolic process | GO:0000956 | 89 | 0.162 | |
| dna templated transcriptional preinitiation complex assembly | GO:0070897 | 51 | 0.128 | |
| rna localization | GO:0006403 | 112 | 0.116 | |
| rrna processing | GO:0006364 | 227 | 0.110 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.101 | |
| protein dna complex assembly | GO:0065004 | 105 | 0.076 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.071 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.064 | |
| ncrna processing | GO:0034470 | 330 | 0.058 | |
| protein dna complex subunit organization | GO:0071824 | 153 | 0.058 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.057 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.055 | |
| ribosome biogenesis | GO:0042254 | 335 | 0.054 | |
| rrna metabolic process | GO:0016072 | 244 | 0.049 | |
| meiotic nuclear division | GO:0007126 | 163 | 0.048 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.046 | |
| nuclear transport | GO:0051169 | 165 | 0.043 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.042 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.041 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.040 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.040 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.039 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.039 | |
| nucleocytoplasmic transport | GO:0006913 | 163 | 0.038 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.038 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.037 | |
| negative regulation of transcription dna templated | GO:0045892 | 258 | 0.037 | |
| dna templated transcription initiation | GO:0006352 | 71 | 0.035 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.035 | |
| protein localization to organelle | GO:0033365 | 337 | 0.034 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.033 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.033 | |
| negative regulation of rna metabolic process | GO:0051253 | 262 | 0.032 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.030 | |
| transposition | GO:0032196 | 20 | 0.030 | |
| phosphorylation | GO:0016310 | 291 | 0.030 | |
| nucleobase containing compound transport | GO:0015931 | 124 | 0.029 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.029 | |
| single organism membrane organization | GO:0044802 | 275 | 0.029 | |
| establishment of protein localization | GO:0045184 | 367 | 0.028 | |
| regulation of molecular function | GO:0065009 | 320 | 0.028 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 260 | 0.028 | |
| generation of catalytic spliceosome for first transesterification step | GO:0000349 | 9 | 0.028 | |
| snorna processing | GO:0043144 | 34 | 0.027 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.027 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.026 | |
| single organism cellular localization | GO:1902580 | 375 | 0.026 | |
| ribonucleoside catabolic process | GO:0042454 | 332 | 0.026 | |
| sterol transport | GO:0015918 | 24 | 0.026 | |
| oxidation reduction process | GO:0055114 | 353 | 0.025 | |
| mrna splice site selection | GO:0006376 | 8 | 0.025 | |
| detection of stimulus | GO:0051606 | 4 | 0.025 | |
| snorna metabolic process | GO:0016074 | 40 | 0.024 | |
| rna catabolic process | GO:0006401 | 118 | 0.024 | |
| macromolecular complex disassembly | GO:0032984 | 80 | 0.024 | |
| alcohol metabolic process | GO:0006066 | 112 | 0.024 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 137 | 0.023 | |
| nuclear export | GO:0051168 | 124 | 0.023 | |
| protein localization to nucleus | GO:0034504 | 74 | 0.023 | |
| protein ubiquitination | GO:0016567 | 118 | 0.023 | |
| meiotic cell cycle | GO:0051321 | 272 | 0.023 | |
| small molecule biosynthetic process | GO:0044283 | 258 | 0.022 | |
| cellular lipid metabolic process | GO:0044255 | 229 | 0.022 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.022 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.022 | |
| single organism signaling | GO:0044700 | 208 | 0.021 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.021 | |
| nuclear division | GO:0000280 | 263 | 0.021 | |
| ribonucleotide catabolic process | GO:0009261 | 327 | 0.021 | |
| mrna transport | GO:0051028 | 60 | 0.021 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.020 | |
| signaling | GO:0023052 | 208 | 0.020 | |
| response to chemical | GO:0042221 | 390 | 0.020 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.020 | |
| mitotic cell cycle | GO:0000278 | 306 | 0.020 | |
| ribonucleoside metabolic process | GO:0009119 | 389 | 0.020 | |
| purine ribonucleoside metabolic process | GO:0046128 | 380 | 0.019 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.019 | |
| rna 3 end processing | GO:0031123 | 88 | 0.019 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.019 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.019 | |
| transcription initiation from rna polymerase ii promoter | GO:0006367 | 55 | 0.019 | |
| establishment of rna localization | GO:0051236 | 92 | 0.019 | |
| protein transport | GO:0015031 | 345 | 0.019 | |
| coenzyme metabolic process | GO:0006732 | 104 | 0.019 | |
| ribosomal large subunit biogenesis | GO:0042273 | 98 | 0.019 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.018 | |
| purine ribonucleotide metabolic process | GO:0009150 | 372 | 0.018 | |
| sexual reproduction | GO:0019953 | 216 | 0.018 | |
| nucleotide catabolic process | GO:0009166 | 330 | 0.018 | |
| single organism catabolic process | GO:0044712 | 619 | 0.018 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.018 | |
| establishment or maintenance of cell polarity | GO:0007163 | 96 | 0.018 | |
| organelle fission | GO:0048285 | 272 | 0.018 | |
| nucleoside phosphate catabolic process | GO:1901292 | 331 | 0.018 | |
| mitochondrion organization | GO:0007005 | 261 | 0.017 | |
| generation of precursor metabolites and energy | GO:0006091 | 147 | 0.017 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.017 | |
| purine nucleotide metabolic process | GO:0006163 | 376 | 0.017 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 260 | 0.017 | |
| intracellular signal transduction | GO:0035556 | 112 | 0.017 | |
| lipid metabolic process | GO:0006629 | 269 | 0.017 | |
| single organism developmental process | GO:0044767 | 258 | 0.017 | |
| rna transport | GO:0050658 | 92 | 0.016 | |
| intracellular mrna localization | GO:0008298 | 23 | 0.016 | |
| purine nucleoside catabolic process | GO:0006152 | 330 | 0.016 | |
| regulation of meiotic cell cycle | GO:0051445 | 43 | 0.016 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.016 | |
| spliceosomal complex assembly | GO:0000245 | 21 | 0.016 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.016 | |
| mrna export from nucleus | GO:0006406 | 60 | 0.016 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.016 | |
| reproductive process | GO:0022414 | 248 | 0.016 | |
| glycerophospholipid metabolic process | GO:0006650 | 98 | 0.016 | |
| rna polymerase ii transcriptional preinitiation complex assembly | GO:0051123 | 40 | 0.016 | |
| nucleic acid transport | GO:0050657 | 94 | 0.015 | |
| intracellular protein transport | GO:0006886 | 319 | 0.015 | |
| regulation of cell cycle | GO:0051726 | 195 | 0.015 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.015 | |
| protein localization to membrane | GO:0072657 | 102 | 0.015 | |
| sphingolipid metabolic process | GO:0006665 | 41 | 0.015 | |
| ribonucleotide metabolic process | GO:0009259 | 377 | 0.015 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.015 | |
| multi organism reproductive process | GO:0044703 | 216 | 0.015 | |
| dna templated transcription termination | GO:0006353 | 42 | 0.015 | |
| methylation | GO:0032259 | 101 | 0.014 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.014 | |
| organic hydroxy compound metabolic process | GO:1901615 | 125 | 0.014 | |
| purine ribonucleoside catabolic process | GO:0046130 | 330 | 0.014 | |
| developmental process | GO:0032502 | 261 | 0.014 | |
| nuclear rna surveillance | GO:0071027 | 30 | 0.014 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.014 | |
| intracellular protein transmembrane transport | GO:0065002 | 80 | 0.014 | |
| glycolipid metabolic process | GO:0006664 | 31 | 0.014 | |
| cellular response to dna damage stimulus | GO:0006974 | 287 | 0.014 | |
| translation | GO:0006412 | 230 | 0.014 | |
| glycosyl compound catabolic process | GO:1901658 | 335 | 0.014 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 329 | 0.013 | |
| organic acid biosynthetic process | GO:0016053 | 152 | 0.013 | |
| ribosomal small subunit biogenesis | GO:0042274 | 124 | 0.013 | |
| regulation of mrna splicing via spliceosome | GO:0048024 | 3 | 0.013 | |
| regulation of dna metabolic process | GO:0051052 | 100 | 0.013 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.013 | |
| ncrna 3 end processing | GO:0043628 | 44 | 0.013 | |
| transcription elongation from rna polymerase ii promoter | GO:0006368 | 81 | 0.013 | |
| cellular component disassembly | GO:0022411 | 86 | 0.013 | |
| transposition rna mediated | GO:0032197 | 17 | 0.013 | |
| organelle inheritance | GO:0048308 | 51 | 0.013 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 327 | 0.013 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.013 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 329 | 0.013 | |
| transmembrane transport | GO:0055085 | 349 | 0.013 | |
| rna export from nucleus | GO:0006405 | 88 | 0.013 | |
| protein transmembrane transport | GO:0071806 | 82 | 0.013 | |
| regulation of signaling | GO:0023051 | 119 | 0.012 | |
| ion transport | GO:0006811 | 274 | 0.012 | |
| cell communication | GO:0007154 | 345 | 0.012 | |
| cofactor biosynthetic process | GO:0051188 | 80 | 0.012 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.012 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.012 | |
| lipid transport | GO:0006869 | 58 | 0.012 | |
| regulation of gene expression epigenetic | GO:0040029 | 147 | 0.012 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.012 | |
| purine nucleotide catabolic process | GO:0006195 | 328 | 0.012 | |
| protein modification by small protein conjugation | GO:0032446 | 144 | 0.012 | |
| regulation of transcription elongation from rna polymerase ii promoter | GO:0034243 | 40 | 0.012 | |
| ribonucleoprotein complex export from nucleus | GO:0071426 | 46 | 0.012 | |
| signal transduction | GO:0007165 | 208 | 0.012 | |
| nuclear transcribed mrna catabolic process deadenylation dependent decay | GO:0000288 | 44 | 0.011 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.011 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.011 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 354 | 0.011 | |
| ribonucleoprotein complex localization | GO:0071166 | 46 | 0.011 | |
| protein phosphorylation | GO:0006468 | 197 | 0.011 | |
| gene silencing by rna | GO:0031047 | 3 | 0.011 | |
| ribose phosphate metabolic process | GO:0019693 | 384 | 0.011 | |
| ras protein signal transduction | GO:0007265 | 29 | 0.011 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.011 | |
| rrna containing ribonucleoprotein complex export from nucleus | GO:0071428 | 46 | 0.011 | |
| nucleotide excision repair | GO:0006289 | 50 | 0.011 | |
| negative regulation of molecular function | GO:0044092 | 68 | 0.011 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.011 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.011 | |
| conjugation with cellular fusion | GO:0000747 | 106 | 0.011 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.011 | |
| polyol metabolic process | GO:0019751 | 22 | 0.011 | |
| protein complex localization | GO:0031503 | 32 | 0.011 | |
| cytoplasmic translation | GO:0002181 | 65 | 0.011 | |
| cellular amino acid metabolic process | GO:0006520 | 225 | 0.010 | |
| energy derivation by oxidation of organic compounds | GO:0015980 | 125 | 0.010 | |
| nuclear retention of pre mrna at the site of transcription | GO:0071033 | 9 | 0.010 | |
| anion transport | GO:0006820 | 145 | 0.010 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 327 | 0.010 | |
| conjugation | GO:0000746 | 107 | 0.010 | |
| macromolecule methylation | GO:0043414 | 85 | 0.010 | |
| histone methylation | GO:0016571 | 28 | 0.010 | |
| cofactor metabolic process | GO:0051186 | 126 | 0.010 | |
| negative regulation of cell cycle | GO:0045786 | 91 | 0.010 | |
| maturation of 5 8s rrna from tricistronic rrna transcript ssu rrna 5 8s rrna lsu rrna | GO:0000466 | 80 | 0.010 | |
| phosphatidylinositol metabolic process | GO:0046488 | 62 | 0.010 | |
