| rna splicing via transesterification reactions | GO:0000375 | 118 | 1.000 | |
| mrna splicing via spliceosome | GO:0000398 | 108 | 1.000 | |
| mrna processing | GO:0006397 | 185 | 1.000 | |
| rna splicing via transesterification reactions with bulged adenosine as nucleophile | GO:0000377 | 109 | 1.000 | |
| rna splicing | GO:0008380 | 131 | 1.000 | |
| mrna metabolic process | GO:0016071 | 269 | 1.000 | |
| spliceosomal conformational changes to generate catalytic conformation | GO:0000393 | 20 | 0.706 | |
| ribonucleoprotein complex assembly | GO:0022618 | 143 | 0.644 | |
| cell cycle phase transition | GO:0044770 | 144 | 0.464 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.197 | |
| dna replication initiation | GO:0006270 | 48 | 0.196 | |
| generation of catalytic spliceosome for first transesterification step | GO:0000349 | 9 | 0.134 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 152 | 0.126 | |
| macromolecular complex disassembly | GO:0032984 | 80 | 0.094 | |
| mitotic cell cycle phase transition | GO:0044772 | 141 | 0.093 | |
| spliceosomal complex assembly | GO:0000245 | 21 | 0.081 | |
| cellular component disassembly | GO:0022411 | 86 | 0.077 | |
| nucleobase containing compound transport | GO:0015931 | 124 | 0.075 | |
| generation of catalytic spliceosome for second transesterification step | GO:0000350 | 9 | 0.073 | |
| dna dependent dna replication | GO:0006261 | 115 | 0.070 | |
| rrna metabolic process | GO:0016072 | 244 | 0.064 | |
| intracellular signal transduction | GO:0035556 | 112 | 0.060 | |
| regulation of cell cycle | GO:0051726 | 195 | 0.057 | |
| meiotic cell cycle | GO:0051321 | 272 | 0.055 | |
| nuclear export | GO:0051168 | 124 | 0.054 | |
| nuclear division | GO:0000280 | 263 | 0.053 | |
| single organism signaling | GO:0044700 | 208 | 0.053 | |
| nucleic acid transport | GO:0050657 | 94 | 0.052 | |
| rna transport | GO:0050658 | 92 | 0.052 | |
| nucleocytoplasmic transport | GO:0006913 | 163 | 0.048 | |
| cell cycle g1 s phase transition | GO:0044843 | 64 | 0.046 | |
| cell communication | GO:0007154 | 345 | 0.046 | |
| single organism catabolic process | GO:0044712 | 619 | 0.043 | |
| rna export from nucleus | GO:0006405 | 88 | 0.042 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.041 | |
| single organism developmental process | GO:0044767 | 258 | 0.039 | |
| dna replication | GO:0006260 | 147 | 0.039 | |
| regulation of gene expression epigenetic | GO:0040029 | 147 | 0.033 | |
| developmental process | GO:0032502 | 261 | 0.032 | |
| protein localization to organelle | GO:0033365 | 337 | 0.031 | |
| organelle fission | GO:0048285 | 272 | 0.031 | |
| response to abiotic stimulus | GO:0009628 | 159 | 0.030 | |
| meiotic nuclear division | GO:0007126 | 163 | 0.030 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 89 | 0.029 | |
| phosphorylation | GO:0016310 | 291 | 0.028 | |
| mitotic cell cycle | GO:0000278 | 306 | 0.028 | |
| membrane organization | GO:0061024 | 276 | 0.028 | |
| regulation of cell cycle process | GO:0010564 | 150 | 0.027 | |
| g1 s transition of mitotic cell cycle | GO:0000082 | 64 | 0.027 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.026 | |
| nuclear transport | GO:0051169 | 165 | 0.026 | |
| protein complex assembly | GO:0006461 | 302 | 0.025 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.025 | |
| regulation of meiosis | GO:0040020 | 42 | 0.024 | |
| nucleoside phosphate biosynthetic process | GO:1901293 | 80 | 0.023 | |
| signaling | GO:0023052 | 208 | 0.023 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.023 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.022 | |
| negative regulation of cellular component organization | GO:0051129 | 109 | 0.022 | |
| ncrna processing | GO:0034470 | 330 | 0.022 | |
| regulation of mitotic cell cycle | GO:0007346 | 107 | 0.021 | |
| cellular response to dna damage stimulus | GO:0006974 | 287 | 0.020 | |
| establishment of rna localization | GO:0051236 | 92 | 0.020 | |
| mrna export from nucleus | GO:0006406 | 60 | 0.019 | |
| single organism carbohydrate metabolic process | GO:0044723 | 237 | 0.019 | |
| regulation of nuclear division | GO:0051783 | 103 | 0.019 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 203 | 0.018 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.018 | |
| cellular response to organic substance | GO:0071310 | 159 | 0.018 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.017 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.017 | |
| maturation of 5 8s rrna from tricistronic rrna transcript ssu rrna 5 8s rrna lsu rrna | GO:0000466 | 80 | 0.017 | |
| mitotic cell cycle process | GO:1903047 | 294 | 0.017 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.017 | |
| anatomical structure development | GO:0048856 | 160 | 0.017 | |
| maturation of 5 8s rrna | GO:0000460 | 80 | 0.017 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.016 | |
| regulation of cell cycle phase transition | GO:1901987 | 70 | 0.016 | |
| organelle localization | GO:0051640 | 128 | 0.016 | |
| regulation of transferase activity | GO:0051338 | 83 | 0.016 | |
| glucan metabolic process | GO:0044042 | 44 | 0.016 | |
| rna localization | GO:0006403 | 112 | 0.016 | |
| multi organism process | GO:0051704 | 233 | 0.015 | |
| peroxisome organization | GO:0007031 | 68 | 0.015 | |
| purine nucleoside monophosphate metabolic process | GO:0009126 | 262 | 0.015 | |
| carbohydrate metabolic process | GO:0005975 | 252 | 0.014 | |
| cellular polysaccharide biosynthetic process | GO:0033692 | 38 | 0.014 | |
| single organism membrane organization | GO:0044802 | 275 | 0.014 | |
| chromatin modification | GO:0016568 | 200 | 0.014 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.014 | |
| chromatin organization | GO:0006325 | 242 | 0.014 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.013 | |
| cellular developmental process | GO:0048869 | 191 | 0.013 | |
| protein modification by small protein conjugation | GO:0032446 | 144 | 0.013 | |
| positive regulation of protein metabolic process | GO:0051247 | 93 | 0.013 | |
| protein phosphorylation | GO:0006468 | 197 | 0.012 | |
| cellular response to heat | GO:0034605 | 53 | 0.012 | |
| cell division | GO:0051301 | 205 | 0.012 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.012 | |
| gene silencing by rna | GO:0031047 | 3 | 0.012 | |
| maintenance of location | GO:0051235 | 66 | 0.012 | |
| atp metabolic process | GO:0046034 | 251 | 0.012 | |
| positive regulation of molecular function | GO:0044093 | 185 | 0.012 | |
| purine nucleoside monophosphate catabolic process | GO:0009128 | 224 | 0.012 | |
| endomembrane system organization | GO:0010256 | 74 | 0.011 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.011 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.011 | |
| mrna cis splicing via spliceosome | GO:0045292 | 4 | 0.011 | |
| positive regulation of cellular component organization | GO:0051130 | 116 | 0.011 | |
| cellular protein complex assembly | GO:0043623 | 209 | 0.011 | |
| multi organism reproductive process | GO:0044703 | 216 | 0.011 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.010 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.010 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.010 | |
| ribosome biogenesis | GO:0042254 | 335 | 0.010 | |
