| establishment of protein localization to organelle | GO:0072594 | 278 | 0.461 | |
| single organism catabolic process | GO:0044712 | 619 | 0.281 | |
| protein localization to organelle | GO:0033365 | 337 | 0.276 | |
| single organism cellular localization | GO:1902580 | 375 | 0.272 | |
| cellular amide metabolic process | GO:0043603 | 59 | 0.199 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.188 | |
| protein targeting | GO:0006605 | 272 | 0.161 | |
| oxidation reduction process | GO:0055114 | 353 | 0.152 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.143 | |
| lipid metabolic process | GO:0006629 | 269 | 0.141 | |
| nuclear import | GO:0051170 | 57 | 0.126 | |
| endosome transport via multivesicular body sorting pathway | GO:0032509 | 27 | 0.125 | |
| intracellular protein transport | GO:0006886 | 319 | 0.121 | |
| regulation of biological quality | GO:0065008 | 391 | 0.118 | |
| peptide metabolic process | GO:0006518 | 28 | 0.115 | |
| cellular lipid metabolic process | GO:0044255 | 229 | 0.107 | |
| membrane organization | GO:0061024 | 276 | 0.106 | |
| organelle fission | GO:0048285 | 272 | 0.102 | |
| developmental process | GO:0032502 | 261 | 0.101 | |
| protein catabolic process | GO:0030163 | 221 | 0.098 | |
| late endosome to vacuole transport via multivesicular body sorting pathway | GO:0032511 | 26 | 0.098 | |
| response to organic substance | GO:0010033 | 182 | 0.095 | |
| single organism membrane organization | GO:0044802 | 275 | 0.095 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.091 | |
| homeostatic process | GO:0042592 | 227 | 0.078 | |
| cellular cation homeostasis | GO:0030003 | 100 | 0.076 | |
| nuclear division | GO:0000280 | 263 | 0.076 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.075 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.073 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.072 | |
| meiotic nuclear division | GO:0007126 | 163 | 0.070 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.070 | |
| mitotic cell cycle process | GO:1903047 | 294 | 0.070 | |
| monocarboxylic acid metabolic process | GO:0032787 | 122 | 0.068 | |
| reproductive process in single celled organism | GO:0022413 | 145 | 0.068 | |
| chemical homeostasis | GO:0048878 | 137 | 0.066 | |
| single organism developmental process | GO:0044767 | 258 | 0.064 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.064 | |
| single organism nuclear import | GO:1902593 | 56 | 0.063 | |
| multi organism reproductive process | GO:0044703 | 216 | 0.063 | |
| response to extracellular stimulus | GO:0009991 | 156 | 0.063 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 289 | 0.060 | |
| protein targeting to vacuole | GO:0006623 | 91 | 0.059 | |
| proteasomal protein catabolic process | GO:0010498 | 141 | 0.057 | |
| nucleus organization | GO:0006997 | 62 | 0.056 | |
| endosomal transport | GO:0016197 | 86 | 0.056 | |
| sporulation resulting in formation of a cellular spore | GO:0030435 | 129 | 0.055 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.054 | |
| multi organism process | GO:0051704 | 233 | 0.054 | |
| protein import into nucleus | GO:0006606 | 55 | 0.053 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.052 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.052 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.051 | |
| maintenance of location | GO:0051235 | 66 | 0.050 | |
| vacuolar transport | GO:0007034 | 145 | 0.049 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.049 | |
| meiotic cell cycle | GO:0051321 | 272 | 0.047 | |
| response to external stimulus | GO:0009605 | 158 | 0.044 | |
| anatomical structure development | GO:0048856 | 160 | 0.043 | |
| cellular response to extracellular stimulus | GO:0031668 | 150 | 0.043 | |
| cell differentiation | GO:0030154 | 161 | 0.042 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.042 | |
| cellular response to organic substance | GO:0071310 | 159 | 0.042 | |
| protein localization to membrane | GO:0072657 | 102 | 0.042 | |
| protein localization to vacuole | GO:0072665 | 92 | 0.042 | |
| ascospore formation | GO:0030437 | 107 | 0.041 | |
| cell wall organization | GO:0071555 | 146 | 0.041 | |
| regulation of cell cycle | GO:0051726 | 195 | 0.040 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.040 | |
| membrane fusion | GO:0061025 | 73 | 0.040 | |
| response to nutrient levels | GO:0031667 | 150 | 0.040 | |
| anatomical structure formation involved in morphogenesis | GO:0048646 | 136 | 0.039 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.039 | |
| cellular ketone metabolic process | GO:0042180 | 63 | 0.039 | |
| sexual reproduction | GO:0019953 | 216 | 0.039 | |
| membrane lipid metabolic process | GO:0006643 | 67 | 0.038 | |
| protein transport | GO:0015031 | 345 | 0.038 | |
| maintenance of location in cell | GO:0051651 | 58 | 0.038 | |
| sexual sporulation resulting in formation of a cellular spore | GO:0043935 | 113 | 0.038 | |
| sporulation | GO:0043934 | 132 | 0.037 | |
| sterol transport | GO:0015918 | 24 | 0.037 | |
| cellular homeostasis | GO:0019725 | 138 | 0.036 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 198 | 0.036 | |
| regulation of protein modification process | GO:0031399 | 110 | 0.036 | |
| response to starvation | GO:0042594 | 96 | 0.036 | |
| cellular response to nutrient levels | GO:0031669 | 144 | 0.036 | |
| cellular developmental process | GO:0048869 | 191 | 0.035 | |
| cellular response to external stimulus | GO:0071496 | 150 | 0.035 | |
| single organism membrane fusion | GO:0044801 | 71 | 0.034 | |
| small molecule catabolic process | GO:0044282 | 88 | 0.034 | |
| positive regulation of organelle organization | GO:0010638 | 85 | 0.034 | |
| single organism signaling | GO:0044700 | 208 | 0.033 | |
| maintenance of protein location in cell | GO:0032507 | 50 | 0.032 | |
| reproduction of a single celled organism | GO:0032505 | 191 | 0.032 | |
| reproductive process | GO:0022414 | 248 | 0.031 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.031 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 181 | 0.031 | |
| nucleocytoplasmic transport | GO:0006913 | 163 | 0.030 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.030 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.030 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.030 | |
| maintenance of protein location | GO:0045185 | 53 | 0.030 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.029 | |
| chromatin organization | GO:0006325 | 242 | 0.029 | |
| anatomical structure morphogenesis | GO:0009653 | 160 | 0.029 | |
| signal transduction | GO:0007165 | 208 | 0.029 | |
| vacuole organization | GO:0007033 | 75 | 0.028 | |
| cellular lipid catabolic process | GO:0044242 | 33 | 0.028 | |
| proteolysis | GO:0006508 | 268 | 0.028 | |
| protein modification by small protein conjugation | GO:0032446 | 144 | 0.028 | |
| mitotic cell cycle | GO:0000278 | 306 | 0.027 | |
| signaling | GO:0023052 | 208 | 0.027 | |
| cell communication | GO:0007154 | 345 | 0.027 | |
| cellular ion homeostasis | GO:0006873 | 112 | 0.026 | |
| modification dependent protein catabolic process | GO:0019941 | 181 | 0.026 | |
| ion homeostasis | GO:0050801 | 118 | 0.026 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.026 | |
| cell division | GO:0051301 | 205 | 0.026 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.026 | |
| positive regulation of cellular component organization | GO:0051130 | 116 | 0.025 | |
| negative regulation of gene expression epigenetic | GO:0045814 | 147 | 0.025 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.025 | |
| cellular response to starvation | GO:0009267 | 90 | 0.025 | |
| lipid biosynthetic process | GO:0008610 | 170 | 0.025 | |
| regulation of cell division | GO:0051302 | 113 | 0.024 | |
| cellular respiration | GO:0045333 | 82 | 0.023 | |
| cellular metal ion homeostasis | GO:0006875 | 78 | 0.023 | |
| protein localization to nucleus | GO:0034504 | 74 | 0.023 | |
| sexual sporulation | GO:0034293 | 113 | 0.023 | |
| response to chemical | GO:0042221 | 390 | 0.022 | |
| membrane invagination | GO:0010324 | 43 | 0.022 | |
| energy derivation by oxidation of organic compounds | GO:0015980 | 125 | 0.022 | |
| sulfur compound transport | GO:0072348 | 19 | 0.022 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.021 | |
| phosphorylation | GO:0016310 | 291 | 0.021 | |
| membrane lipid biosynthetic process | GO:0046467 | 54 | 0.021 | |
| regulation of kinase activity | GO:0043549 | 71 | 0.021 | |
| meiotic cell cycle process | GO:1903046 | 229 | 0.021 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.021 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 137 | 0.021 | |
| response to abiotic stimulus | GO:0009628 | 159 | 0.021 | |
| signal transduction by phosphorylation | GO:0023014 | 31 | 0.020 | |
| vacuole fusion non autophagic | GO:0042144 | 40 | 0.020 | |
| protein complex assembly | GO:0006461 | 302 | 0.020 | |
| cellular carbohydrate metabolic process | GO:0044262 | 135 | 0.020 | |
| nuclear transport | GO:0051169 | 165 | 0.019 | |
| establishment of protein localization to vacuole | GO:0072666 | 91 | 0.019 | |
| establishment of protein localization to membrane | GO:0090150 | 99 | 0.019 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.019 | |
| regulation of signaling | GO:0023051 | 119 | 0.019 | |
| organelle fusion | GO:0048284 | 85 | 0.019 | |
| cation homeostasis | GO:0055080 | 105 | 0.018 | |
| response to inorganic substance | GO:0010035 | 47 | 0.018 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.018 | |
| negative regulation of organelle organization | GO:0010639 | 103 | 0.017 | |
| mitotic nuclear division | GO:0007067 | 131 | 0.017 | |
| protein phosphorylation | GO:0006468 | 197 | 0.017 | |
| cellular modified amino acid metabolic process | GO:0006575 | 51 | 0.017 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 203 | 0.017 | |
| negative regulation of transcription dna templated | GO:0045892 | 258 | 0.017 | |
| cell development | GO:0048468 | 107 | 0.017 | |
| positive regulation of protein metabolic process | GO:0051247 | 93 | 0.016 | |
| regulation of cellular component size | GO:0032535 | 50 | 0.016 | |
| protein targeting to nucleus | GO:0044744 | 57 | 0.016 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.016 | |
| protein ubiquitination | GO:0016567 | 118 | 0.016 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.016 | |
| cellular chemical homeostasis | GO:0055082 | 123 | 0.016 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.016 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.016 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 260 | 0.016 | |
| regulation of molecular function | GO:0065009 | 320 | 0.015 | |
| regulation of meiosis | GO:0040020 | 42 | 0.015 | |
| protein import | GO:0017038 | 122 | 0.015 | |
| positive regulation of cytoplasmic transport | GO:1903651 | 4 | 0.015 | |
| cellular response to oxidative stress | GO:0034599 | 94 | 0.015 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.015 | |
| positive regulation of cytoskeleton organization | GO:0051495 | 39 | 0.014 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.014 | |
| positive regulation of intracellular protein transport | GO:0090316 | 3 | 0.014 | |
| protein targeting to membrane | GO:0006612 | 52 | 0.014 | |
| mapk cascade | GO:0000165 | 30 | 0.014 | |
| vesicle fusion | GO:0006906 | 33 | 0.014 | |
| intracellular signal transduction | GO:0035556 | 112 | 0.014 | |
| lipid catabolic process | GO:0016042 | 33 | 0.014 | |
| positive regulation of protein modification process | GO:0031401 | 49 | 0.014 | |
| positive regulation of intracellular transport | GO:0032388 | 4 | 0.013 | |
| cell surface receptor signaling pathway | GO:0007166 | 38 | 0.013 | |
| autophagy | GO:0006914 | 106 | 0.013 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 260 | 0.013 | |
| regulation of cell communication | GO:0010646 | 124 | 0.013 | |
| fungal type cell wall organization | GO:0031505 | 145 | 0.013 | |
| ion transmembrane transport | GO:0034220 | 200 | 0.013 | |
| protein maturation | GO:0051604 | 76 | 0.013 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 89 | 0.013 | |
| organelle assembly | GO:0070925 | 118 | 0.013 | |
| protein folding | GO:0006457 | 94 | 0.013 | |
| vacuole fusion | GO:0097576 | 40 | 0.013 | |
| regulation of protein complex assembly | GO:0043254 | 77 | 0.013 | |
| organic hydroxy compound metabolic process | GO:1901615 | 125 | 0.013 | |
| external encapsulating structure organization | GO:0045229 | 146 | 0.013 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.012 | |
| nuclear pore organization | GO:0006999 | 18 | 0.012 | |
| chromatin modification | GO:0016568 | 200 | 0.012 | |
| regulation of transferase activity | GO:0051338 | 83 | 0.012 | |
| filamentous growth | GO:0030447 | 124 | 0.012 | |
| alcohol metabolic process | GO:0006066 | 112 | 0.012 | |
| organelle localization | GO:0051640 | 128 | 0.012 | |
| gene silencing | GO:0016458 | 151 | 0.012 | |
| negative regulation of phosphorylation | GO:0042326 | 28 | 0.012 | |
| aging | GO:0007568 | 71 | 0.012 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 137 | 0.012 | |
| regulation of transcription factor import into nucleus | GO:0042990 | 4 | 0.012 | |
| meiotic chromosome segregation | GO:0045132 | 31 | 0.012 | |
| positive regulation of cell cycle process | GO:0090068 | 31 | 0.012 | |
| cellular response to abiotic stimulus | GO:0071214 | 62 | 0.012 | |
| positive regulation of secretion by cell | GO:1903532 | 2 | 0.012 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.011 | |
| lipid transport | GO:0006869 | 58 | 0.011 | |
| response to oxygen containing compound | GO:1901700 | 61 | 0.011 | |
| protein processing | GO:0016485 | 64 | 0.011 | |
| negative regulation of rna metabolic process | GO:0051253 | 262 | 0.011 | |
| endomembrane system organization | GO:0010256 | 74 | 0.011 | |
| positive regulation of cellular catabolic process | GO:0031331 | 128 | 0.011 | |
| cellular response to nitrogen compound | GO:1901699 | 14 | 0.011 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 147 | 0.011 | |
| response to oxidative stress | GO:0006979 | 99 | 0.011 | |
| sphingolipid biosynthetic process | GO:0030148 | 29 | 0.011 | |
| regulation of cytoskeleton organization | GO:0051493 | 63 | 0.010 | |
| negative regulation of cell communication | GO:0010648 | 33 | 0.010 | |
| glycerophospholipid metabolic process | GO:0006650 | 98 | 0.010 | |
| single organism reproductive process | GO:0044702 | 159 | 0.010 | |
| regulation of lipid biosynthetic process | GO:0046890 | 32 | 0.010 | |
| histone modification | GO:0016570 | 119 | 0.010 | |
| establishment of organelle localization | GO:0051656 | 96 | 0.010 | |
| developmental process involved in reproduction | GO:0003006 | 159 | 0.010 | |
| quinone biosynthetic process | GO:1901663 | 13 | 0.010 | |
| regulation of cell cycle process | GO:0010564 | 150 | 0.010 | |
| organic hydroxy compound transport | GO:0015850 | 41 | 0.010 | |
