| dna repair | GO:0006281 | 236 | 0.256 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 260 | 0.220 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.219 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.205 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.166 | |
| regulation of biological quality | GO:0065008 | 391 | 0.166 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.164 | |
| cellular response to dna damage stimulus | GO:0006974 | 287 | 0.163 | |
| regulation of gene expression epigenetic | GO:0040029 | 147 | 0.143 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.118 | |
| cellular homeostasis | GO:0019725 | 138 | 0.114 | |
| negative regulation of gene expression epigenetic | GO:0045814 | 147 | 0.111 | |
| chromatin silencing | GO:0006342 | 147 | 0.102 | |
| chromatin silencing at telomere | GO:0006348 | 84 | 0.099 | |
| chromatin modification | GO:0016568 | 200 | 0.098 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 260 | 0.097 | |
| response to chemical | GO:0042221 | 390 | 0.096 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.093 | |
| ion homeostasis | GO:0050801 | 118 | 0.090 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.089 | |
| cellular cation homeostasis | GO:0030003 | 100 | 0.078 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.077 | |
| single organism cellular localization | GO:1902580 | 375 | 0.072 | |
| anion transport | GO:0006820 | 145 | 0.071 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.071 | |
| chromatin organization | GO:0006325 | 242 | 0.071 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.071 | |
| gene silencing | GO:0016458 | 151 | 0.070 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.067 | |
| rna export from nucleus | GO:0006405 | 88 | 0.066 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.063 | |
| single organism membrane organization | GO:0044802 | 275 | 0.063 | |
| cellular chemical homeostasis | GO:0055082 | 123 | 0.062 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.059 | |
| mrna metabolic process | GO:0016071 | 269 | 0.059 | |
| homeostatic process | GO:0042592 | 227 | 0.058 | |
| ribonucleoprotein complex assembly | GO:0022618 | 143 | 0.058 | |
| cation homeostasis | GO:0055080 | 105 | 0.056 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.056 | |
| ion transport | GO:0006811 | 274 | 0.055 | |
| membrane organization | GO:0061024 | 276 | 0.053 | |
| nucleotide excision repair | GO:0006289 | 50 | 0.050 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.049 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 289 | 0.048 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.048 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.048 | |
| protein complex assembly | GO:0006461 | 302 | 0.047 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.046 | |
| negative regulation of rna metabolic process | GO:0051253 | 262 | 0.046 | |
| establishment of protein localization | GO:0045184 | 367 | 0.046 | |
| cellular ion homeostasis | GO:0006873 | 112 | 0.044 | |
| protein transport | GO:0015031 | 345 | 0.043 | |
| rna transport | GO:0050658 | 92 | 0.042 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.040 | |
| modification dependent protein catabolic process | GO:0019941 | 181 | 0.039 | |
| protein dna complex subunit organization | GO:0071824 | 153 | 0.039 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.039 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.038 | |
| cellular metal ion homeostasis | GO:0006875 | 78 | 0.038 | |
| nucleobase containing compound transport | GO:0015931 | 124 | 0.037 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 137 | 0.034 | |
| macromolecule methylation | GO:0043414 | 85 | 0.033 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.032 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.032 | |
| organic acid biosynthetic process | GO:0016053 | 152 | 0.031 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.031 | |
| cellular monovalent inorganic cation homeostasis | GO:0030004 | 27 | 0.029 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.028 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.028 | |
| methylation | GO:0032259 | 101 | 0.028 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.027 | |
| ribosome biogenesis | GO:0042254 | 335 | 0.027 | |
| nuclear export | GO:0051168 | 124 | 0.027 | |
| proton transporting two sector atpase complex assembly | GO:0070071 | 15 | 0.026 | |
| multi organism process | GO:0051704 | 233 | 0.026 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.025 | |
| transcription initiation from rna polymerase ii promoter | GO:0006367 | 55 | 0.025 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.025 | |
| intracellular protein transport | GO:0006886 | 319 | 0.025 | |
| transmembrane transport | GO:0055085 | 349 | 0.024 | |
| rna localization | GO:0006403 | 112 | 0.024 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.024 | |
| metal ion homeostasis | GO:0055065 | 79 | 0.023 | |
| protein modification by small protein conjugation | GO:0032446 | 144 | 0.023 | |
| single organism catabolic process | GO:0044712 | 619 | 0.022 | |
| histone modification | GO:0016570 | 119 | 0.022 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.022 | |
| endosomal transport | GO:0016197 | 86 | 0.022 | |
| nucleic acid transport | GO:0050657 | 94 | 0.021 | |
| nucleocytoplasmic transport | GO:0006913 | 163 | 0.021 | |
| cellular protein complex assembly | GO:0043623 | 209 | 0.021 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.021 | |
| regulation of transcription from rna polymerase i promoter | GO:0006356 | 36 | 0.021 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.020 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.020 | |
| response to organic substance | GO:0010033 | 182 | 0.020 | |
| mitochondrion organization | GO:0007005 | 261 | 0.020 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.020 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.020 | |
| regulation of dna metabolic process | GO:0051052 | 100 | 0.020 | |
| mrna transport | GO:0051028 | 60 | 0.020 | |
| mitotic recombination | GO:0006312 | 55 | 0.019 | |
| ncrna processing | GO:0034470 | 330 | 0.019 | |
| chromatin silencing at silent mating type cassette | GO:0030466 | 53 | 0.019 | |
| meiotic cell cycle | GO:0051321 | 272 | 0.019 | |
| negative regulation of transcription dna templated | GO:0045892 | 258 | 0.018 | |
| protein localization to organelle | GO:0033365 | 337 | 0.018 | |
| protein dna complex assembly | GO:0065004 | 105 | 0.018 | |
| lipid metabolic process | GO:0006629 | 269 | 0.018 | |
| proteolysis | GO:0006508 | 268 | 0.018 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.018 | |
| protein alkylation | GO:0008213 | 48 | 0.017 | |
| sulfur compound metabolic process | GO:0006790 | 95 | 0.017 | |
| filamentous growth | GO:0030447 | 124 | 0.017 | |
| response to abiotic stimulus | GO:0009628 | 159 | 0.017 | |
| protein folding | GO:0006457 | 94 | 0.017 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 89 | 0.017 | |
| organic anion transport | GO:0015711 | 114 | 0.017 | |
| positive regulation of transcription elongation from rna polymerase i promoter | GO:2001209 | 7 | 0.017 | |
| dna templated transcription termination | GO:0006353 | 42 | 0.016 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.016 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.016 | |
| negative regulation of response to stimulus | GO:0048585 | 40 | 0.016 | |
| regulation of transcription from rna polymerase ii promoter in response to stress | GO:0043618 | 51 | 0.016 | |
| regulation of nucleotide excision repair | GO:2000819 | 7 | 0.016 | |
| organelle fission | GO:0048285 | 272 | 0.016 | |
| chemical homeostasis | GO:0048878 | 137 | 0.015 | |
| protein catabolic process | GO:0030163 | 221 | 0.015 | |
| nucleus organization | GO:0006997 | 62 | 0.015 | |
| protein targeting | GO:0006605 | 272 | 0.015 | |
| regulation of transcription elongation from rna polymerase ii promoter | GO:0034243 | 40 | 0.015 | |
| lipid biosynthetic process | GO:0008610 | 170 | 0.014 | |
| chromatin remodeling | GO:0006338 | 80 | 0.014 | |
| regulation of localization | GO:0032879 | 127 | 0.014 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 203 | 0.014 | |
| protein complex disassembly | GO:0043241 | 70 | 0.014 | |
| cation transport | GO:0006812 | 166 | 0.014 | |
| nuclear transport | GO:0051169 | 165 | 0.014 | |
| lipid localization | GO:0010876 | 60 | 0.014 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 181 | 0.014 | |
| mrna processing | GO:0006397 | 185 | 0.014 | |
| cellular amine metabolic process | GO:0044106 | 51 | 0.014 | |
| rrna processing | GO:0006364 | 227 | 0.013 | |
| macromolecular complex disassembly | GO:0032984 | 80 | 0.013 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 198 | 0.013 | |
| organophosphate ester transport | GO:0015748 | 45 | 0.013 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.013 | |
| poly a mrna export from nucleus | GO:0016973 | 24 | 0.013 | |
| carboxylic acid biosynthetic process | GO:0046394 | 152 | 0.013 | |
| protein localization to membrane | GO:0072657 | 102 | 0.013 | |
| actin cytoskeleton organization | GO:0030036 | 100 | 0.013 | |
| reproductive process in single celled organism | GO:0022413 | 145 | 0.013 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.013 | |
| regulation of dna repair | GO:0006282 | 14 | 0.013 | |
| carbohydrate metabolic process | GO:0005975 | 252 | 0.013 | |
| amine metabolic process | GO:0009308 | 51 | 0.012 | |
| microtubule cytoskeleton organization | GO:0000226 | 109 | 0.012 | |
| positive regulation of transcription elongation from rna polymerase ii promoter | GO:0032968 | 38 | 0.012 | |
| regulation of proteolysis | GO:0030162 | 44 | 0.012 | |
| endomembrane system organization | GO:0010256 | 74 | 0.012 | |
| cellular response to organic substance | GO:0071310 | 159 | 0.012 | |
| positive regulation of cellular component organization | GO:0051130 | 116 | 0.012 | |
| developmental process involved in reproduction | GO:0003006 | 159 | 0.012 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.012 | |
| cellular component disassembly | GO:0022411 | 86 | 0.011 | |
| positive regulation of dna templated transcription elongation | GO:0032786 | 42 | 0.011 | |
| rna splicing | GO:0008380 | 131 | 0.011 | |
| cellular lipid metabolic process | GO:0044255 | 229 | 0.011 | |
| gtp catabolic process | GO:0006184 | 107 | 0.011 | |
| positive regulation of protein metabolic process | GO:0051247 | 93 | 0.011 | |
| regulation of transcription by chromatin organization | GO:0034401 | 19 | 0.011 | |
| rna catabolic process | GO:0006401 | 118 | 0.011 | |
| transcription coupled nucleotide excision repair | GO:0006283 | 16 | 0.011 | |
| cellular ketone metabolic process | GO:0042180 | 63 | 0.011 | |
| protein methylation | GO:0006479 | 48 | 0.011 | |
| establishment of organelle localization | GO:0051656 | 96 | 0.011 | |
| single organism reproductive process | GO:0044702 | 159 | 0.011 | |
| establishment of rna localization | GO:0051236 | 92 | 0.010 | |
| protein ubiquitination | GO:0016567 | 118 | 0.010 | |
| meiotic nuclear division | GO:0007126 | 163 | 0.010 | |
| lipid transport | GO:0006869 | 58 | 0.010 | |
| proteasome assembly | GO:0043248 | 31 | 0.010 | |
| dna templated transcriptional preinitiation complex assembly | GO:0070897 | 51 | 0.010 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 42 | 0.010 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.010 | |
| organelle localization | GO:0051640 | 128 | 0.010 | |
