| chromatin organization | GO:0006325 | 242 | 0.982 | |
| histone modification | GO:0016570 | 119 | 0.934 | |
| chromatin modification | GO:0016568 | 200 | 0.921 | |
| dna repair | GO:0006281 | 236 | 0.908 | |
| covalent chromatin modification | GO:0016569 | 119 | 0.890 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.880 | |
| cellular response to dna damage stimulus | GO:0006974 | 287 | 0.847 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.749 | |
| autophagy | GO:0006914 | 106 | 0.730 | |
| cellular response to nutrient levels | GO:0031669 | 144 | 0.680 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 260 | 0.666 | |
| cellular response to external stimulus | GO:0071496 | 150 | 0.601 | |
| histone acetylation | GO:0016573 | 51 | 0.582 | |
| response to nutrient levels | GO:0031667 | 150 | 0.552 | |
| peptidyl lysine acetylation | GO:0018394 | 52 | 0.526 | |
| response to extracellular stimulus | GO:0009991 | 156 | 0.518 | |
| peptidyl amino acid modification | GO:0018193 | 116 | 0.517 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.511 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.510 | |
| cellular response to extracellular stimulus | GO:0031668 | 150 | 0.489 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.482 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.460 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.441 | |
| peptidyl lysine modification | GO:0018205 | 77 | 0.412 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.408 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 289 | 0.399 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.380 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.326 | |
| protein acylation | GO:0043543 | 66 | 0.322 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.321 | |
| internal protein amino acid acetylation | GO:0006475 | 52 | 0.310 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.308 | |
| negative regulation of rna metabolic process | GO:0051253 | 262 | 0.278 | |
| internal peptidyl lysine acetylation | GO:0018393 | 52 | 0.273 | |
| protein transport | GO:0015031 | 345 | 0.266 | |
| establishment of protein localization | GO:0045184 | 367 | 0.266 | |
| double strand break repair | GO:0006302 | 105 | 0.265 | Human |
| negative regulation of gene expression | GO:0010629 | 312 | 0.252 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.243 | |
| single organism cellular localization | GO:1902580 | 375 | 0.239 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 260 | 0.229 | |
| negative regulation of transcription dna templated | GO:0045892 | 258 | 0.226 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.217 | |
| regulation of response to stress | GO:0080134 | 57 | 0.215 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.189 | |
| protein targeting | GO:0006605 | 272 | 0.179 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.156 | Worm |
| regulation of transcription elongation from rna polymerase ii promoter | GO:0034243 | 40 | 0.154 | |
| single organism catabolic process | GO:0044712 | 619 | 0.134 | |
| cell communication | GO:0007154 | 345 | 0.119 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.117 | |
| protein acetylation | GO:0006473 | 59 | 0.117 | |
| regulation of cell communication | GO:0010646 | 124 | 0.114 | |
| protein targeting to vacuole | GO:0006623 | 91 | 0.107 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.102 | |
| protein localization to organelle | GO:0033365 | 337 | 0.098 | Worm |
| cellular response to starvation | GO:0009267 | 90 | 0.097 | |
| nucleocytoplasmic transport | GO:0006913 | 163 | 0.095 | |
| macroautophagy | GO:0016236 | 55 | 0.090 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.087 | |
| protein localization to vacuole | GO:0072665 | 92 | 0.085 | |
| response to starvation | GO:0042594 | 96 | 0.082 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.082 | |
| transcription elongation from rna polymerase ii promoter | GO:0006368 | 81 | 0.080 | |
| regulation of dna templated transcription elongation | GO:0032784 | 44 | 0.078 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.072 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 137 | 0.069 | Human |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.068 | |
| gene silencing | GO:0016458 | 151 | 0.065 | |
| regulation of response to nutrient levels | GO:0032107 | 20 | 0.061 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.061 | |
| growth | GO:0040007 | 157 | 0.060 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.059 | |
| signal transduction | GO:0007165 | 208 | 0.058 | Human |
| regulation of macroautophagy | GO:0016241 | 15 | 0.052 | |
| regulation of signal transduction | GO:0009966 | 114 | 0.052 | |
| regulation of cellular response to stress | GO:0080135 | 50 | 0.048 | |
| intracellular protein transport | GO:0006886 | 319 | 0.047 | |
| regulation of autophagy | GO:0010506 | 18 | 0.042 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.042 | |
| cell aging | GO:0007569 | 70 | 0.041 | |
| vacuolar transport | GO:0007034 | 145 | 0.040 | |
| regulation of response to extracellular stimulus | GO:0032104 | 20 | 0.039 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.037 | |
| chromatin silencing | GO:0006342 | 147 | 0.036 | |
| regulation of response to external stimulus | GO:0032101 | 20 | 0.036 | |
| positive regulation of cell communication | GO:0010647 | 28 | 0.035 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.034 | Human |
| organelle inheritance | GO:0048308 | 51 | 0.033 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.032 | |
| nucleosome organization | GO:0034728 | 63 | 0.031 | Yeast |
| organophosphate metabolic process | GO:0019637 | 597 | 0.031 | |
| nuclear transport | GO:0051169 | 165 | 0.030 | |
| regulation of chromatin silencing | GO:0031935 | 39 | 0.030 | |
| single organism developmental process | GO:0044767 | 258 | 0.028 | Worm |
| regulation of cellular component organization | GO:0051128 | 334 | 0.026 | |
| signaling | GO:0023052 | 208 | 0.026 | Human |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.026 | |
| proteolysis | GO:0006508 | 268 | 0.025 | Human |
| dna templated transcription elongation | GO:0006354 | 91 | 0.024 | |
| protein dna complex subunit organization | GO:0071824 | 153 | 0.023 | Yeast |
| aging | GO:0007568 | 71 | 0.021 | |
| establishment of protein localization to vacuole | GO:0072666 | 91 | 0.020 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.020 | |
| positive regulation of response to nutrient levels | GO:0032109 | 12 | 0.020 | |
| regulation of dna metabolic process | GO:0051052 | 100 | 0.020 | |
| chromatin remodeling | GO:0006338 | 80 | 0.018 | Yeast |
| regulation of gene silencing | GO:0060968 | 41 | 0.016 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.016 | Human |
| organophosphate catabolic process | GO:0046434 | 338 | 0.016 | |
| protein localization to chromosome | GO:0034502 | 28 | 0.016 | Worm |
| cellular response to nutrient | GO:0031670 | 50 | 0.016 | |
| double strand break repair via nonhomologous end joining | GO:0006303 | 27 | 0.015 | |
| negative regulation of signaling | GO:0023057 | 30 | 0.014 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.014 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.014 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.013 | |
| positive regulation of macroautophagy | GO:0016239 | 8 | 0.013 | |
| intracellular signal transduction | GO:0035556 | 112 | 0.013 | Human |
| cell differentiation | GO:0030154 | 161 | 0.013 | Worm |
| chromatin silencing at telomere | GO:0006348 | 84 | 0.013 | Yeast |
| anatomical structure development | GO:0048856 | 160 | 0.013 | Worm |
| non recombinational repair | GO:0000726 | 33 | 0.013 | |
| developmental process | GO:0032502 | 261 | 0.013 | Worm |
| nuclear import | GO:0051170 | 57 | 0.012 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.012 | |
| protein targeting to nucleus | GO:0044744 | 57 | 0.012 | |
| regulation of translation | GO:0006417 | 89 | 0.011 | |
| protein ubiquitination | GO:0016567 | 118 | 0.011 | |
| regulation of cell cycle | GO:0051726 | 195 | 0.011 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.011 | |
| regulation of signaling | GO:0023051 | 119 | 0.011 | |
| single organism nuclear import | GO:1902593 | 56 | 0.010 | |
