| mitotic spindle organization | GO:0007052 | 220 | 0.706 | |
| multicellular organismal aging | GO:0010259 | 140 | 0.656 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 79 | 0.615 | |
| proteolysis | GO:0006508 | 192 | 0.475 | |
| modification dependent protein catabolic process | GO:0019941 | 78 | 0.472 | |
| dna repair | GO:0006281 | 54 | 0.463 | |
| cellular protein catabolic process | GO:0044257 | 83 | 0.413 | |
| cellular response to dna damage stimulus | GO:0006974 | 223 | 0.370 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 54 | 0.355 | |
| regulation of endopeptidase activity | GO:0052548 | 36 | 0.351 | |
| positive regulation of proteolysis | GO:0045862 | 52 | 0.279 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 83 | 0.267 | |
| cellular catabolic process | GO:0044248 | 372 | 0.244 | |
| catabolic process | GO:0009056 | 409 | 0.243 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 78 | 0.228 | |
| negative regulation of signaling | GO:0023057 | 219 | 0.223 | |
| determination of adult lifespan | GO:0008340 | 137 | 0.220 | |
| regulation of meiosis | GO:0040020 | 3 | 0.179 | |
| ubiquitin homeostasis | GO:0010992 | 1 | 0.174 | |
| er associated ubiquitin dependent protein catabolic process | GO:0030433 | 3 | 0.173 | |
| aging | GO:0007568 | 143 | 0.167 | |
| spindle organization | GO:0007051 | 253 | 0.166 | |
| protein catabolic process | GO:0030163 | 101 | 0.164 | |
| regulation of proteolysis | GO:0030162 | 87 | 0.136 | |
| regulation of peptidase activity | GO:0052547 | 39 | 0.134 | |
| response to radiation | GO:0009314 | 155 | 0.132 | |
| dna metabolic process | GO:0006259 | 227 | 0.132 | |
| positive regulation of endopeptidase activity | GO:0010950 | 26 | 0.118 | |
| regulation of cellular component biogenesis | GO:0044087 | 201 | 0.112 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.112 | |
| regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032434 | 37 | 0.102 | |
| protein modification by small protein removal | GO:0070646 | 28 | 0.102 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 152 | 0.097 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 117 | 0.097 | |
| proteasomal protein catabolic process | GO:0010498 | 59 | 0.093 | |
| positive regulation of proteolysis involved in cellular protein catabolic process | GO:1903052 | 24 | 0.092 | |
| protein deubiquitination | GO:0016579 | 17 | 0.089 | |
| organelle fission | GO:0048285 | 340 | 0.088 | |
| cellular protein modification process | GO:0006464 | 438 | 0.088 | |
| positive regulation of peptidase activity | GO:0010952 | 29 | 0.086 | |
| positive regulation of synaptic growth at neuromuscular junction | GO:0045887 | 26 | 0.083 | |
| autophagy | GO:0006914 | 108 | 0.081 | |
| organic substance transport | GO:0071702 | 257 | 0.076 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.072 | |
| protein ubiquitination | GO:0016567 | 70 | 0.069 | |
| regulation of catabolic process | GO:0009894 | 170 | 0.067 | |
| protein complex assembly | GO:0006461 | 200 | 0.066 | |
| male gamete generation | GO:0048232 | 201 | 0.065 | |
| nuclear division | GO:0000280 | 332 | 0.064 | |
| cellular macromolecular complex assembly | GO:0034622 | 153 | 0.061 | |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.059 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 204 | 0.058 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.058 | |
| cell recognition | GO:0008037 | 102 | 0.057 | |
| positive regulation of transcription dna templated | GO:0045893 | 266 | 0.057 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.055 | |
| spermatogenesis | GO:0007283 | 200 | 0.055 | |
| double strand break repair | GO:0006302 | 26 | 0.054 | |
| regulation of cell cycle process | GO:0010564 | 181 | 0.053 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.052 | |
| gene silencing | GO:0016458 | 138 | 0.051 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.049 | |
| protein modification process | GO:0036211 | 438 | 0.049 | |
| positive regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032436 | 19 | 0.048 | |
| proteasome assembly | GO:0043248 | 2 | 0.046 | |
| regulation of protein catabolic process | GO:0042176 | 55 | 0.045 | |
| negative regulation of gene expression | GO:0010629 | 387 | 0.042 | |
| dna templated transcription elongation | GO:0006354 | 18 | 0.042 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.041 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.041 | |
| chemotaxis | GO:0006935 | 249 | 0.040 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.040 | |
| larval development | GO:0002164 | 104 | 0.039 | |
| death | GO:0016265 | 284 | 0.039 | |
| response to light stimulus | GO:0009416 | 124 | 0.037 | |
| regulation of proteasomal protein catabolic process | GO:0061136 | 39 | 0.036 | |
| atp metabolic process | GO:0046034 | 49 | 0.036 | |
| mitotic nuclear division | GO:0007067 | 213 | 0.035 | |
| spindle elongation | GO:0051231 | 83 | 0.034 | |
| programmed cell death | GO:0012501 | 257 | 0.034 | |
| positive regulation of cellular component biogenesis | GO:0044089 | 80 | 0.034 | |
| regulation of gene expression epigenetic | GO:0040029 | 128 | 0.034 | |
| positive regulation of molecular function | GO:0044093 | 136 | 0.033 | |
| regulation of cellular protein catabolic process | GO:1903362 | 44 | 0.032 | |
| regulation of proteolysis involved in cellular protein catabolic process | GO:1903050 | 44 | 0.031 | |
| positive regulation of proteasomal protein catabolic process | GO:1901800 | 20 | 0.031 | |
| regulation of transport | GO:0051049 | 181 | 0.031 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 266 | 0.030 | |
| cell death | GO:0008219 | 279 | 0.030 | |
| regulation of protein complex assembly | GO:0043254 | 42 | 0.028 | |
| positive regulation of cellular catabolic process | GO:0031331 | 95 | 0.028 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.027 | |
| small gtpase mediated signal transduction | GO:0007264 | 88 | 0.027 | |
| regulation of localization | GO:0032879 | 275 | 0.027 | |
| apoptotic process | GO:0006915 | 159 | 0.027 | |
| response to organic substance | GO:0010033 | 284 | 0.027 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.026 | |
| purine ribonucleoside metabolic process | GO:0046128 | 127 | 0.026 | |
| regulation of cellular catabolic process | GO:0031329 | 157 | 0.026 | |
| homeostatic process | GO:0042592 | 199 | 0.026 | |
| immune system process | GO:0002376 | 347 | 0.025 | |
| cellular protein complex assembly | GO:0043623 | 71 | 0.025 | |
| regulation of developmental growth | GO:0048638 | 174 | 0.024 | |
| positive regulation of hydrolase activity | GO:0051345 | 78 | 0.024 | |
| cell proliferation | GO:0008283 | 299 | 0.024 | |
| regulation of vesicle mediated transport | GO:0060627 | 59 | 0.024 | |
| cell cycle phase transition | GO:0044770 | 140 | 0.024 | |
| regulation of defense response | GO:0031347 | 102 | 0.024 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.023 | |
| purine ribonucleotide metabolic process | GO:0009150 | 145 | 0.023 | |
| regulation of rna polymerase ii transcriptional preinitiation complex assembly | GO:0045898 | 1 | 0.023 | |
| hematopoietic or lymphoid organ development | GO:0048534 | 57 | 0.023 | |
| protein transport | GO:0015031 | 155 | 0.023 | |
| positive regulation of catalytic activity | GO:0043085 | 118 | 0.022 | |
| hormone metabolic process | GO:0042445 | 33 | 0.022 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.021 | |
| protein maturation | GO:0051604 | 71 | 0.021 | |
| camera type eye development | GO:0043010 | 4 | 0.021 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 106 | 0.021 | |
| regulation of organelle organization | GO:0033043 | 196 | 0.021 | |
| single organism biosynthetic process | GO:0044711 | 206 | 0.020 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.020 | |
| positive regulation of catabolic process | GO:0009896 | 105 | 0.020 | |
| activation of cysteine type endopeptidase activity involved in apoptotic process | GO:0006919 | 16 | 0.020 | |
| entry into cell of other organism involved in symbiotic interaction | GO:0051806 | 3 | 0.020 | |
| positive regulation of rna metabolic process | GO:0051254 | 271 | 0.019 | |
| dna recombination | GO:0006310 | 32 | 0.019 | |
| protein complex biogenesis | GO:0070271 | 201 | 0.019 | |
| positive regulation of multicellular organismal process | GO:0051240 | 143 | 0.019 | |
| positive regulation of synapse assembly | GO:0051965 | 29 | 0.019 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.019 | |
| positive regulation of protein catabolic process | GO:0045732 | 34 | 0.019 | |
| endocytosis | GO:0006897 | 310 | 0.018 | |
| eggshell formation | GO:0030703 | 105 | 0.018 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.017 | |
| response to hexose | GO:0009746 | 3 | 0.017 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.017 | |
| gene silencing by rna | GO:0031047 | 57 | 0.017 | |
| response to starvation | GO:0042594 | 97 | 0.017 | |
| protein dna complex assembly | GO:0065004 | 63 | 0.017 | |
| ras protein signal transduction | GO:0007265 | 88 | 0.016 | |
| regulation of erk1 and erk2 cascade | GO:0070372 | 39 | 0.016 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.016 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.016 | |
| ribose phosphate metabolic process | GO:0019693 | 145 | 0.015 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.015 | |
| cell cell signaling involved in cell fate commitment | GO:0045168 | 210 | 0.015 | |
| nucleoside phosphate metabolic process | GO:0006753 | 162 | 0.015 | |
| regulation of cell division | GO:0051302 | 72 | 0.015 | |
| protein dna complex subunit organization | GO:0071824 | 86 | 0.015 | |
| regulation of growth | GO:0040008 | 233 | 0.014 | |
| neuron recognition | GO:0008038 | 101 | 0.014 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 3 | 0.014 | |
| regulation of nuclear division | GO:0051783 | 58 | 0.014 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 265 | 0.014 | |
| connective tissue development | GO:0061448 | 3 | 0.014 | |
| compound eye photoreceptor cell differentiation | GO:0001751 | 140 | 0.014 | |
| regulation of hydrolase activity | GO:0051336 | 97 | 0.014 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 165 | 0.014 | |
| organelle assembly | GO:0070925 | 198 | 0.014 | |
| single organism catabolic process | GO:0044712 | 228 | 0.014 | |
| single organism intracellular transport | GO:1902582 | 207 | 0.013 | |
| establishment of protein localization | GO:0045184 | 163 | 0.013 | |
| negative regulation of cell communication | GO:0010648 | 223 | 0.013 | |
| phagocytosis | GO:0006909 | 215 | 0.013 | |
| epithelial cell differentiation | GO:0030855 | 322 | 0.013 | |
| columnar cuboidal epithelial cell differentiation | GO:0002065 | 256 | 0.013 | |
| positive regulation of growth | GO:0045927 | 75 | 0.013 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 118 | 0.013 | |
| regulation of programmed cell death | GO:0043067 | 152 | 0.013 | |
| positive regulation of developmental process | GO:0051094 | 143 | 0.013 | |
| response to other organism | GO:0051707 | 293 | 0.013 | |
| cullin deneddylation | GO:0010388 | 3 | 0.013 | |
| lateral inhibition | GO:0046331 | 206 | 0.012 | |
| intracellular signal transduction | GO:0035556 | 300 | 0.012 | |
| apical junction assembly | GO:0043297 | 32 | 0.012 | |
| regulation of intracellular signal transduction | GO:1902531 | 236 | 0.012 | |
| negative regulation of intracellular signal transduction | GO:1902532 | 57 | 0.012 | |
| transcription elongation from rna polymerase ii promoter | GO:0006368 | 18 | 0.012 | |
| regulation of mitotic cell cycle | GO:0007346 | 190 | 0.012 | |
| negative regulation of biosynthetic process | GO:0009890 | 277 | 0.012 | |
| regulation of synapse organization | GO:0050807 | 110 | 0.012 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.012 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.012 | |
| double strand break repair via homologous recombination | GO:0000724 | 13 | 0.012 | |
| cellular component disassembly | GO:0022411 | 46 | 0.012 | |
| carbohydrate derivative metabolic process | GO:1901135 | 217 | 0.011 | |
| regulation of cellular component size | GO:0032535 | 98 | 0.011 | |
| intracellular transport | GO:0046907 | 228 | 0.011 | |
| developmental programmed cell death | GO:0010623 | 138 | 0.011 | |
| response to nutrient levels | GO:0031667 | 114 | 0.011 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.011 | |
| positive regulation of protein metabolic process | GO:0051247 | 128 | 0.011 | |
| cell maturation | GO:0048469 | 144 | 0.011 | |
| regulation of i kappab kinase nf kappab signaling | GO:0043122 | 2 | 0.011 | |
| anatomical structure homeostasis | GO:0060249 | 97 | 0.011 | |
| negative regulation of response to stimulus | GO:0048585 | 258 | 0.011 | |
| wound healing | GO:0042060 | 75 | 0.011 | |
| purine nucleoside catabolic process | GO:0006152 | 112 | 0.011 | |
| ribonucleoside metabolic process | GO:0009119 | 127 | 0.011 | |
| regulation of response to external stimulus | GO:0032101 | 115 | 0.010 | |
| imaginal disc derived wing morphogenesis | GO:0007476 | 337 | 0.010 | |
| salivary gland histolysis | GO:0035070 | 88 | 0.010 | |
| ion transport | GO:0006811 | 145 | 0.010 | |
| regulation of cellular response to stress | GO:0080135 | 89 | 0.010 | |
| regulation of humoral immune response | GO:0002920 | 51 | 0.010 | |
| positive regulation of cellular component organization | GO:0051130 | 156 | 0.010 | |
| regulation of intracellular transport | GO:0032386 | 64 | 0.010 | |
| taxis | GO:0042330 | 304 | 0.010 | |
| cell migration | GO:0016477 | 238 | 0.010 | |
| neuron projection guidance | GO:0097485 | 241 | 0.010 | |
