| cellular protein modification process | GO:0006464 | 438 | 0.472 | |
| protein modification process | GO:0036211 | 438 | 0.192 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.152 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.130 | |
| cell cycle checkpoint | GO:0000075 | 95 | 0.127 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.122 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.100 | |
| regulation of phosphorus metabolic process | GO:0051174 | 210 | 0.092 | |
| axis specification | GO:0009798 | 167 | 0.092 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.076 | |
| regulation of molecular function | GO:0065009 | 217 | 0.075 | |
| negative regulation of cell communication | GO:0010648 | 223 | 0.075 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.073 | |
| segmentation | GO:0035282 | 207 | 0.071 | |
| eye morphogenesis | GO:0048592 | 260 | 0.070 | |
| cellular ketone metabolic process | GO:0042180 | 24 | 0.070 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.068 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.067 | |
| negative regulation of signaling | GO:0023057 | 219 | 0.066 | |
| negative regulation of response to stimulus | GO:0048585 | 258 | 0.065 | |
| compound eye morphogenesis | GO:0001745 | 249 | 0.065 | |
| negative regulation of mitotic cell cycle phase transition | GO:1901991 | 103 | 0.064 | |
| negative regulation of phosphorus metabolic process | GO:0010563 | 45 | 0.060 | |
| positive regulation of rna metabolic process | GO:0051254 | 271 | 0.058 | |
| blastoderm segmentation | GO:0007350 | 159 | 0.058 | |
| multicellular organismal aging | GO:0010259 | 140 | 0.057 | |
| centrosome duplication | GO:0051298 | 121 | 0.055 | |
| growth | GO:0040007 | 359 | 0.054 | |
| compound eye development | GO:0048749 | 307 | 0.054 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.053 | |
| immune system process | GO:0002376 | 347 | 0.053 | |
| cell division | GO:0051301 | 248 | 0.052 | |
| centrosome cycle | GO:0007098 | 137 | 0.052 | |
| regulation of phosphorylation | GO:0042325 | 147 | 0.051 | |
| protein phosphorylation | GO:0006468 | 169 | 0.051 | |
| sensory organ morphogenesis | GO:0090596 | 260 | 0.050 | |
| humoral immune response | GO:0006959 | 117 | 0.049 | |
| spermatogenesis | GO:0007283 | 200 | 0.048 | |
| negative regulation of cell cycle phase transition | GO:1901988 | 103 | 0.048 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.045 | |
| gene silencing | GO:0016458 | 138 | 0.045 | |
| determination of adult lifespan | GO:0008340 | 137 | 0.043 | |
| negative regulation of signal transduction | GO:0009968 | 206 | 0.042 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.042 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.042 | |
| mitotic spindle organization | GO:0007052 | 220 | 0.041 | |
| regulation of transferase activity | GO:0051338 | 58 | 0.040 | |
| negative regulation of mitotic cell cycle | GO:0045930 | 109 | 0.038 | |
| negative regulation of phosphate metabolic process | GO:0045936 | 45 | 0.038 | |
| regionalization | GO:0003002 | 416 | 0.038 | |
| cell cycle phase transition | GO:0044770 | 140 | 0.038 | |
| programmed cell death | GO:0012501 | 257 | 0.037 | Worm |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.037 | |
| epithelial cell development | GO:0002064 | 274 | 0.037 | |
| regulation of cellular catabolic process | GO:0031329 | 157 | 0.035 | |
| regulation of response to stress | GO:0080134 | 200 | 0.035 | |
| aging | GO:0007568 | 143 | 0.034 | |
| transmembrane receptor protein tyrosine kinase signaling pathway | GO:0007169 | 116 | 0.033 | |
| enzyme linked receptor protein signaling pathway | GO:0007167 | 179 | 0.032 | |
| carboxylic acid metabolic process | GO:0019752 | 92 | 0.032 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.032 | |
| embryonic axis specification | GO:0000578 | 107 | 0.030 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.030 | |
| single organism catabolic process | GO:0044712 | 228 | 0.030 | |
| regulation of protein kinase activity | GO:0045859 | 51 | 0.029 | |
| regulation of protein modification process | GO:0031399 | 112 | 0.029 | |
| regulation of cell cycle phase transition | GO:1901987 | 130 | 0.029 | |
| negative regulation of gene expression | GO:0010629 | 387 | 0.028 | |
| regulation of phosphate metabolic process | GO:0019220 | 210 | 0.028 | |
| cellular catabolic process | GO:0044248 | 372 | 0.027 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.027 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 130 | 0.027 | |
| chromosome organization | GO:0051276 | 360 | 0.027 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.026 | |
| death | GO:0016265 | 284 | 0.026 | Worm |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.026 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 3 | 0.026 | |
| positive regulation of transcription dna templated | GO:0045893 | 266 | 0.026 | |
| cell maturation | GO:0048469 | 144 | 0.025 | |
| localization of cell | GO:0051674 | 257 | 0.025 | |
| spermatid differentiation | GO:0048515 | 114 | 0.025 | |
| peptidyl amino acid modification | GO:0018193 | 105 | 0.025 | |
| protein catabolic process | GO:0030163 | 101 | 0.025 | |
| gene silencing by rna | GO:0031047 | 57 | 0.025 | |
| regulation of mitotic cell cycle | GO:0007346 | 190 | 0.025 | |
| oxoacid metabolic process | GO:0043436 | 103 | 0.024 | |
| mitotic cytokinesis | GO:0000281 | 50 | 0.024 | |
| negative regulation of cell cycle | GO:0045786 | 116 | 0.023 | |
| positive regulation of hydrolase activity | GO:0051345 | 78 | 0.023 | |
| phosphorylation | GO:0016310 | 294 | 0.023 | |
| centrosome organization | GO:0051297 | 163 | 0.023 | |
| maternal determination of anterior posterior axis embryo | GO:0008358 | 74 | 0.022 | |
| regulation of growth | GO:0040008 | 233 | 0.021 | |
| respiratory system development | GO:0060541 | 213 | 0.021 | |
| mitotic cell cycle checkpoint | GO:0007093 | 88 | 0.021 | |
| regulation of hydrolase activity | GO:0051336 | 97 | 0.021 | |
| developmental maturation | GO:0021700 | 172 | 0.021 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.020 | |
| sister chromatid segregation | GO:0000819 | 92 | 0.020 | |
| antimicrobial humoral response | GO:0019730 | 99 | 0.020 | |
| negative regulation of cell cycle process | GO:0010948 | 109 | 0.020 | |
| mitotic cell cycle phase transition | GO:0044772 | 138 | 0.020 | |
| peptidyl tyrosine phosphorylation | GO:0018108 | 24 | 0.019 | |
| germarium derived egg chamber formation | GO:0007293 | 101 | 0.019 | |
| regulation of cellular amine metabolic process | GO:0033238 | 3 | 0.019 | |
| regulation of proteolysis | GO:0030162 | 87 | 0.019 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 0 | 0.019 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 266 | 0.019 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 152 | 0.018 | Worm |
| muscle structure development | GO:0061061 | 224 | 0.018 | |
| regulation of cell cycle process | GO:0010564 | 181 | 0.018 | |
| developmental growth | GO:0048589 | 280 | 0.018 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 204 | 0.018 | |
| negative regulation of catalytic activity | GO:0043086 | 42 | 0.017 | |
| positive regulation of developmental process | GO:0051094 | 143 | 0.017 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 118 | 0.017 | |
| defense response to other organism | GO:0098542 | 225 | 0.017 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.017 | |
| male gamete generation | GO:0048232 | 201 | 0.017 | |
| regulation of gene expression epigenetic | GO:0040029 | 128 | 0.017 | |
| response to radiation | GO:0009314 | 155 | 0.016 | |
| dna conformation change | GO:0071103 | 105 | 0.016 | |
| amine metabolic process | GO:0009308 | 12 | 0.016 | |
| eye development | GO:0001654 | 323 | 0.016 | |
| maintenance of location | GO:0051235 | 73 | 0.016 | |
| regulation of endopeptidase activity | GO:0052548 | 36 | 0.016 | |
| response to lipopolysaccharide | GO:0032496 | 4 | 0.016 | |
| response to other organism | GO:0051707 | 293 | 0.016 | |
| camera type eye development | GO:0043010 | 4 | 0.015 | |
| microtubule organizing center organization | GO:0031023 | 168 | 0.015 | |
| regulation of kinase activity | GO:0043549 | 53 | 0.015 | |
| small gtpase mediated signal transduction | GO:0007264 | 88 | 0.015 | |
| regulation of catabolic process | GO:0009894 | 170 | 0.015 | |
| membrane organization | GO:0061024 | 112 | 0.015 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.015 | |
| axonogenesis | GO:0007409 | 290 | 0.015 | Worm |
| cytoskeleton dependent cytokinesis | GO:0061640 | 81 | 0.014 | |
| negative regulation of transcription dna templated | GO:0045892 | 237 | 0.014 | |
| response to external biotic stimulus | GO:0043207 | 293 | 0.014 | |
| transmembrane receptor protein serine threonine kinase signaling pathway | GO:0007178 | 65 | 0.014 | |
| positive regulation of intracellular signal transduction | GO:1902533 | 116 | 0.014 | |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.014 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.014 | |
| oocyte construction | GO:0007308 | 112 | 0.014 | |
| synapse organization | GO:0050808 | 196 | 0.014 | |
| regulation of nuclear division | GO:0051783 | 58 | 0.014 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 79 | 0.014 | |
| chromatin remodeling | GO:0006338 | 72 | 0.014 | |
| positive regulation of growth | GO:0045927 | 75 | 0.013 | |
| negative regulation of proteolysis | GO:0045861 | 31 | 0.013 | |
| establishment of protein localization | GO:0045184 | 163 | 0.013 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 270 | 0.013 | |
| organelle fission | GO:0048285 | 340 | 0.013 | |
| positive regulation of defense response to bacterium | GO:1900426 | 23 | 0.013 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 83 | 0.013 | |
| developmental pigmentation | GO:0048066 | 68 | 0.013 | |
| positive regulation of cellular catabolic process | GO:0031331 | 95 | 0.012 | |
| molting cycle | GO:0042303 | 56 | 0.012 | Worm |
| negative regulation of protein maturation | GO:1903318 | 31 | 0.012 | |
| response to biotic stimulus | GO:0009607 | 294 | 0.012 | |
| actin cytoskeleton organization | GO:0030036 | 206 | 0.012 | |
| regulation of sister chromatid segregation | GO:0033045 | 28 | 0.012 | |
| regulation of response to external stimulus | GO:0032101 | 115 | 0.012 | |
| anterior posterior axis specification | GO:0009948 | 109 | 0.012 | |
| chromatin organization | GO:0006325 | 207 | 0.012 | |
| compound eye photoreceptor development | GO:0042051 | 78 | 0.012 | |
| positive regulation of catalytic activity | GO:0043085 | 118 | 0.012 | |
| positive regulation of defense response | GO:0031349 | 59 | 0.012 | |
| imaginal disc growth | GO:0007446 | 37 | 0.012 | |
| positive regulation of protein metabolic process | GO:0051247 | 128 | 0.012 | |
| chromatin modification | GO:0016568 | 147 | 0.012 | |
| hematopoietic progenitor cell differentiation | GO:0002244 | 1 | 0.011 | |
| nucleoside phosphate catabolic process | GO:1901292 | 110 | 0.011 | |
| dna damage checkpoint | GO:0000077 | 78 | 0.011 | |
| positive regulation of molecular function | GO:0044093 | 136 | 0.011 | |
| oocyte differentiation | GO:0009994 | 145 | 0.011 | |
| spermatid development | GO:0007286 | 98 | 0.011 | |
| regulation of developmental growth | GO:0048638 | 174 | 0.011 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 54 | 0.011 | |
| peptidyl tyrosine modification | GO:0018212 | 24 | 0.011 | |
| immune response | GO:0006955 | 246 | 0.011 | |
| imaginal disc fusion | GO:0046528 | 19 | 0.011 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 78 | 0.011 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 139 | 0.011 | |
| regulation of mitosis | GO:0007088 | 56 | 0.011 | |
| protein modification by small protein conjugation | GO:0032446 | 79 | 0.011 | |
| reproductive system development | GO:0061458 | 74 | 0.011 | |
| response to ecdysone | GO:0035075 | 34 | 0.011 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 106 | 0.011 | |
| nuclear division | GO:0000280 | 332 | 0.011 | |
| regulation of intracellular signal transduction | GO:1902531 | 236 | 0.011 | |
| negative regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032435 | 16 | 0.011 | |
| ras protein signal transduction | GO:0007265 | 88 | 0.011 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 265 | 0.010 | |
| response to wounding | GO:0009611 | 94 | 0.010 | |
| organic acid metabolic process | GO:0006082 | 103 | 0.010 | |
| regulation of cellular response to stress | GO:0080135 | 89 | 0.010 | |
| cellular amine metabolic process | GO:0044106 | 12 | 0.010 | |
| protein processing | GO:0016485 | 68 | 0.010 | |
| regulation of mrna metabolic process | GO:1903311 | 72 | 0.010 | |
| negative regulation of chromosome segregation | GO:0051985 | 14 | 0.010 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 139 | 0.010 | |
| defense response | GO:0006952 | 300 | 0.010 | |