| cellular protein modification process | GO:0006464 | 438 | 0.578 | |
| centrosome duplication | GO:0051298 | 121 | 0.398 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.315 | |
| centrosome cycle | GO:0007098 | 137 | 0.311 | |
| protein acylation | GO:0043543 | 42 | 0.261 | |
| protein modification process | GO:0036211 | 438 | 0.247 | |
| chromosome organization | GO:0051276 | 360 | 0.229 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.227 | |
| centrosome organization | GO:0051297 | 163 | 0.219 | |
| microtubule organizing center organization | GO:0031023 | 168 | 0.213 | |
| cellular catabolic process | GO:0044248 | 372 | 0.202 | |
| dna metabolic process | GO:0006259 | 227 | 0.187 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.149 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.106 | |
| positive regulation of transcription dna templated | GO:0045893 | 266 | 0.100 | |
| chromatin organization | GO:0006325 | 207 | 0.093 | |
| protein dna complex assembly | GO:0065004 | 63 | 0.092 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.086 | |
| positive regulation of rna metabolic process | GO:0051254 | 271 | 0.084 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 265 | 0.083 | |
| intracellular transport | GO:0046907 | 228 | 0.081 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.081 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.080 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.080 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.077 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 204 | 0.071 | |
| snrna 3 end processing | GO:0034472 | 14 | 0.057 | |
| cellularization | GO:0007349 | 90 | 0.052 | |
| chromatin modification | GO:0016568 | 147 | 0.049 | |
| histone mrna metabolic process | GO:0008334 | 8 | 0.048 | |
| negative regulation of gene expression | GO:0010629 | 387 | 0.047 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.046 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.045 | |
| peptidyl lysine acetylation | GO:0018394 | 39 | 0.044 | |
| homeostatic process | GO:0042592 | 199 | 0.044 | |
| tissue morphogenesis | GO:0048729 | 297 | 0.044 | |
| protein acetylation | GO:0006473 | 39 | 0.043 | |
| regulation of localization | GO:0032879 | 275 | 0.043 | |
| single organism intracellular transport | GO:1902582 | 207 | 0.040 | |
| protein localization | GO:0008104 | 284 | 0.040 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.039 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.037 | |
| histone modification | GO:0016570 | 106 | 0.037 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 266 | 0.037 | |
| membrane organization | GO:0061024 | 112 | 0.037 | |
| protein dna complex subunit organization | GO:0071824 | 86 | 0.036 | |
| regionalization | GO:0003002 | 416 | 0.035 | |
| nucleosome organization | GO:0034728 | 59 | 0.035 | |
| internal peptidyl lysine acetylation | GO:0018393 | 38 | 0.034 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 240 | 0.034 | |
| meiotic cell cycle | GO:0051321 | 171 | 0.034 | |
| protein complex biogenesis | GO:0070271 | 201 | 0.033 | |
| protein complex assembly | GO:0006461 | 200 | 0.033 | |
| axon development | GO:0061564 | 297 | 0.032 | |
| localization of cell | GO:0051674 | 257 | 0.032 | |
| catabolic process | GO:0009056 | 409 | 0.031 | |
| cellular protein catabolic process | GO:0044257 | 83 | 0.031 | |
| positive regulation of signal transduction | GO:0009967 | 223 | 0.030 | |
| camera type eye development | GO:0043010 | 4 | 0.029 | |
| protein modification by small protein conjugation | GO:0032446 | 79 | 0.029 | |
| developmental maturation | GO:0021700 | 172 | 0.029 | |
| cellular macromolecule localization | GO:0070727 | 220 | 0.029 | |
| axon guidance | GO:0007411 | 233 | 0.028 | |
| proteolysis | GO:0006508 | 192 | 0.028 | |
| growth | GO:0040007 | 359 | 0.028 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.028 | |
| organelle fission | GO:0048285 | 340 | 0.027 | |
| covalent chromatin modification | GO:0016569 | 106 | 0.027 | |
| cytoplasmic transport | GO:0016482 | 130 | 0.026 | |
| peptidyl lysine modification | GO:0018205 | 57 | 0.026 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.025 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.025 | |
| negative regulation of rna metabolic process | GO:0051253 | 251 | 0.025 | |
| positive regulation of signaling | GO:0023056 | 243 | 0.024 | |
| negative regulation of developmental process | GO:0051093 | 201 | 0.024 | |
| tripartite regional subdivision | GO:0007351 | 103 | 0.024 | |
| proteasomal protein catabolic process | GO:0010498 | 59 | 0.024 | |
| internal protein amino acid acetylation | GO:0006475 | 38 | 0.024 | |
| cellular response to chemical stimulus | GO:0070887 | 199 | 0.023 | |
| negative regulation of transcription dna templated | GO:0045892 | 237 | 0.023 | |
| intracellular protein transport | GO:0006886 | 104 | 0.022 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.022 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.022 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 83 | 0.022 | |
| protein catabolic process | GO:0030163 | 101 | 0.021 | |
| carboxylic acid metabolic process | GO:0019752 | 92 | 0.021 | |
| regulation of molecular function | GO:0065009 | 217 | 0.021 | |
| nuclear division | GO:0000280 | 332 | 0.021 | |
| cell maturation | GO:0048469 | 144 | 0.021 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.021 | |
| neuron projection guidance | GO:0097485 | 241 | 0.021 | |
| protein ubiquitination | GO:0016567 | 70 | 0.020 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 118 | 0.020 | |
| single organism catabolic process | GO:0044712 | 228 | 0.020 | |
| cellular macromolecular complex assembly | GO:0034622 | 153 | 0.020 | |
| regulation of cell development | GO:0060284 | 215 | 0.020 | |
| imaginal disc derived appendage morphogenesis | GO:0035114 | 395 | 0.020 | |
| developmental growth | GO:0048589 | 280 | 0.020 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.020 | |
| regulation of cellular amine metabolic process | GO:0033238 | 3 | 0.019 | |
| cellular protein localization | GO:0034613 | 160 | 0.019 | |
| regulation of intracellular signal transduction | GO:1902531 | 236 | 0.019 | |
| dna conformation change | GO:0071103 | 105 | 0.019 | |
| compound eye development | GO:0048749 | 307 | 0.019 | |
| single fertilization | GO:0007338 | 24 | 0.019 | |
| axis specification | GO:0009798 | 167 | 0.019 | |
| regulation of multicellular organismal development | GO:2000026 | 414 | 0.019 | |
| single organism cellular localization | GO:1902580 | 180 | 0.019 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 240 | 0.019 | |
| neurological system process | GO:0050877 | 358 | 0.019 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 261 | 0.018 | |
| dna packaging | GO:0006323 | 91 | 0.018 | |
| appendage development | GO:0048736 | 401 | 0.018 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 267 | 0.018 | |
| telomere maintenance | GO:0000723 | 21 | 0.018 | |
| cell motility | GO:0048870 | 251 | 0.018 | |
| anterior posterior pattern specification | GO:0009952 | 136 | 0.017 | |
| chromatin assembly or disassembly | GO:0006333 | 52 | 0.017 | |
| wing disc morphogenesis | GO:0007472 | 344 | 0.017 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.017 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 270 | 0.017 | |
| response to oxygen containing compound | GO:1901700 | 200 | 0.017 | |
| dna replication | GO:0006260 | 48 | 0.016 | |
| regulation of neurogenesis | GO:0050767 | 158 | 0.016 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.016 | |
| cellular response to dna damage stimulus | GO:0006974 | 223 | 0.016 | |
| morphogenesis of an epithelium | GO:0002009 | 276 | 0.016 | |
| rna processing | GO:0006396 | 147 | 0.016 | |
| imaginal disc derived appendage development | GO:0048737 | 399 | 0.015 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.015 | |
| negative regulation of biosynthetic process | GO:0009890 | 277 | 0.015 | |
| chromatin assembly | GO:0031497 | 48 | 0.015 | |
| appendage morphogenesis | GO:0035107 | 397 | 0.015 | |
| regulation of phosphorus metabolic process | GO:0051174 | 210 | 0.015 | |
| meiotic nuclear division | GO:0007126 | 151 | 0.015 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.015 | |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.015 | |
| positive regulation of protein metabolic process | GO:0051247 | 128 | 0.015 | |
| regulation of phosphate metabolic process | GO:0019220 | 210 | 0.015 | |
| wnt signaling pathway | GO:0016055 | 98 | 0.015 | |
| neuroblast proliferation | GO:0007405 | 74 | 0.014 | |
| regulation of protein modification process | GO:0031399 | 112 | 0.014 | |
| peptidyl amino acid modification | GO:0018193 | 105 | 0.014 | |
| snrna metabolic process | GO:0016073 | 14 | 0.014 | |
| regulation of cellular localization | GO:0060341 | 136 | 0.014 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 54 | 0.014 | |
| multi organism behavior | GO:0051705 | 175 | 0.013 | |
| gene silencing | GO:0016458 | 138 | 0.013 | |
| taxis | GO:0042330 | 304 | 0.013 | |
| peptidyl proline modification | GO:0018208 | 3 | 0.013 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 78 | 0.013 | |
| single organism membrane organization | GO:0044802 | 93 | 0.013 | |
| purine nucleoside catabolic process | GO:0006152 | 112 | 0.013 | |
| establishment of localization in cell | GO:0051649 | 402 | 0.013 | |
| salivary gland development | GO:0007431 | 162 | 0.013 | |
| regulation of chromosome organization | GO:0033044 | 64 | 0.013 | |
| protein transport | GO:0015031 | 155 | 0.013 | |
| cellular amino acid metabolic process | GO:0006520 | 61 | 0.013 | |
| positive regulation of catabolic process | GO:0009896 | 105 | 0.013 | |
| muscle structure development | GO:0061061 | 224 | 0.012 | |
| synapse organization | GO:0050808 | 196 | 0.012 | |
| pole cell formation | GO:0007279 | 19 | 0.012 | |
| organophosphate catabolic process | GO:0046434 | 112 | 0.012 | |
| purine nucleoside metabolic process | GO:0042278 | 127 | 0.012 | |
| purine nucleotide metabolic process | GO:0006163 | 146 | 0.012 | |
| asymmetric stem cell division | GO:0098722 | 49 | 0.012 | |
| negative regulation of cell differentiation | GO:0045596 | 143 | 0.012 | |
| response to oxidative stress | GO:0006979 | 86 | 0.012 | |
| regulation of catabolic process | GO:0009894 | 170 | 0.012 | |
| anterior posterior axis specification | GO:0009948 | 109 | 0.012 | |
| oocyte development | GO:0048599 | 124 | 0.012 | |
| organic acid metabolic process | GO:0006082 | 103 | 0.012 | |
| regulation of nervous system development | GO:0051960 | 248 | 0.012 | |
| cell migration | GO:0016477 | 238 | 0.012 | |
| positive regulation of protein modification process | GO:0031401 | 58 | 0.012 | |
| epithelial cell development | GO:0002064 | 274 | 0.011 | |
| regulation of multi organism process | GO:0043900 | 131 | 0.011 | |
| peptidyl lysine methylation | GO:0018022 | 16 | 0.011 | |
| ras protein signal transduction | GO:0007265 | 88 | 0.011 | |
| actin cytoskeleton organization | GO:0030036 | 206 | 0.011 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 0 | 0.011 | |
| phagocytosis | GO:0006909 | 215 | 0.011 | |
| snrna processing | GO:0016180 | 14 | 0.011 | |
| maternal determination of anterior posterior axis embryo | GO:0008358 | 74 | 0.011 | |
| gland morphogenesis | GO:0022612 | 145 | 0.011 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 120 | 0.011 | |
| pole cell development | GO:0007277 | 26 | 0.011 | |
| embryonic development via the syncytial blastoderm | GO:0001700 | 148 | 0.011 | |
| negative regulation of cell communication | GO:0010648 | 223 | 0.011 | |
| central nervous system development | GO:0007417 | 201 | 0.011 | |
| oxoacid metabolic process | GO:0043436 | 103 | 0.011 | |
| mrna metabolic process | GO:0016071 | 124 | 0.011 | |
| positive regulation of protein catabolic process | GO:0045732 | 34 | 0.010 | |
| axonogenesis | GO:0007409 | 290 | 0.010 | |
| camera type eye morphogenesis | GO:0048593 | 2 | 0.010 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 119 | 0.010 | |
| purine ribonucleoside metabolic process | GO:0046128 | 127 | 0.010 | |
| regulation of phosphorylation | GO:0042325 | 147 | 0.010 | |