| negative regulation of gene expression | GO:0010629 | 387 | 0.515 | |
| mrna metabolic process | GO:0016071 | 124 | 0.292 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 267 | 0.264 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.184 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.165 | |
| negative regulation of biosynthetic process | GO:0009890 | 277 | 0.160 | |
| negative regulation of rna metabolic process | GO:0051253 | 251 | 0.159 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 261 | 0.147 | |
| endocytosis | GO:0006897 | 310 | 0.146 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.141 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 270 | 0.138 | |
| molting cycle | GO:0042303 | 56 | 0.129 | |
| negative regulation of transcription dna templated | GO:0045892 | 237 | 0.120 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.117 | Human Yeast |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 265 | 0.115 | |
| cellular catabolic process | GO:0044248 | 372 | 0.103 | |
| nuclear division | GO:0000280 | 332 | 0.103 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.100 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 145 | 0.094 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.091 | |
| rna processing | GO:0006396 | 147 | 0.084 | |
| immune system process | GO:0002376 | 347 | 0.084 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 152 | 0.081 | Worm |
| growth | GO:0040007 | 359 | 0.081 | |
| establishment of localization in cell | GO:0051649 | 402 | 0.081 | |
| regulation of meiosis | GO:0040020 | 3 | 0.068 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.068 | |
| catabolic process | GO:0009056 | 409 | 0.067 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.066 | |
| programmed cell death | GO:0012501 | 257 | 0.065 | |
| cell death | GO:0008219 | 279 | 0.064 | |
| regulation of mitotic cell cycle | GO:0007346 | 190 | 0.061 | |
| mitotic spindle organization | GO:0007052 | 220 | 0.059 | |
| mrna processing | GO:0006397 | 104 | 0.055 | |
| rna splicing | GO:0008380 | 83 | 0.055 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 240 | 0.051 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.048 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 240 | 0.047 | |
| organic substance transport | GO:0071702 | 257 | 0.045 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 266 | 0.044 | |
| negative regulation of response to stimulus | GO:0048585 | 258 | 0.044 | |
| regulation of cell cycle process | GO:0010564 | 181 | 0.042 | |
| body morphogenesis | GO:0010171 | 2 | 0.037 | |
| rna splicing via transesterification reactions with bulged adenosine as nucleophile | GO:0000377 | 73 | 0.037 | |
| rna 3 end processing | GO:0031123 | 45 | 0.036 | |
| mrna catabolic process | GO:0006402 | 33 | 0.035 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.034 | |
| mrna cis splicing via spliceosome | GO:0045292 | 1 | 0.033 | |
| spindle organization | GO:0007051 | 253 | 0.032 | |
| heterocycle catabolic process | GO:0046700 | 166 | 0.031 | |
| phagocytosis | GO:0006909 | 215 | 0.031 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.031 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.029 | |
| chromatin organization | GO:0006325 | 207 | 0.028 | |
| organic cyclic compound catabolic process | GO:1901361 | 168 | 0.028 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.027 | |
| nucleobase containing compound catabolic process | GO:0034655 | 165 | 0.026 | |
| mitotic dna damage checkpoint | GO:0044773 | 74 | 0.025 | |
| chromosome organization | GO:0051276 | 360 | 0.025 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.025 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.025 | |
| nitrogen compound transport | GO:0071705 | 85 | 0.025 | |
| regulation of organelle organization | GO:0033043 | 196 | 0.025 | |
| response to biotic stimulus | GO:0009607 | 294 | 0.025 | |
| developmental growth | GO:0048589 | 280 | 0.024 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.024 | |
| spliceosomal snrnp assembly | GO:0000387 | 2 | 0.023 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 119 | 0.023 | |
| death | GO:0016265 | 284 | 0.023 | |
| regulation of hydrolase activity | GO:0051336 | 97 | 0.022 | |
| localization of cell | GO:0051674 | 257 | 0.022 | |
| regulation of growth | GO:0040008 | 233 | 0.022 | |
| apoptotic process | GO:0006915 | 159 | 0.022 | |
| negative regulation of mitotic cell cycle | GO:0045930 | 109 | 0.022 | |
| protein neddylation | GO:0045116 | 5 | 0.021 | |
| cellular macromolecule localization | GO:0070727 | 220 | 0.021 | |
| centrosome organization | GO:0051297 | 163 | 0.021 | |
| anatomical structure homeostasis | GO:0060249 | 97 | 0.021 | |
| mrna splicing via spliceosome | GO:0000398 | 73 | 0.020 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.020 | |
| meiotic cell cycle | GO:0051321 | 171 | 0.020 | |
| cytoplasmic transport | GO:0016482 | 130 | 0.020 | |
| cell motility | GO:0048870 | 251 | 0.020 | |
| aromatic compound catabolic process | GO:0019439 | 166 | 0.019 | |
| hydrogen peroxide catabolic process | GO:0042744 | 6 | 0.019 | |
| defense response | GO:0006952 | 300 | 0.019 | |
| regulation of programmed cell death | GO:0043067 | 152 | 0.019 | |
| prostanoid biosynthetic process | GO:0046457 | 1 | 0.019 | |
| regulation of multi organism process | GO:0043900 | 131 | 0.018 | |
| positive regulation of transcription dna templated | GO:0045893 | 266 | 0.018 | |
| regulation of response to stress | GO:0080134 | 200 | 0.018 | |
| ncrna 3 end processing | GO:0043628 | 17 | 0.017 | |
| intracellular transport | GO:0046907 | 228 | 0.017 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.017 | |
| establishment of protein localization | GO:0045184 | 163 | 0.017 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.017 | |
| secretion by cell | GO:0032940 | 101 | 0.017 | |
| cellular response to chemical stimulus | GO:0070887 | 199 | 0.016 | |
| regulation of atpase activity | GO:0043462 | 4 | 0.016 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.016 | |
| regulation of immune system process | GO:0002682 | 176 | 0.016 | |
| cell division | GO:0051301 | 248 | 0.016 | |
| cellular protein localization | GO:0034613 | 160 | 0.016 | |
| telomere maintenance | GO:0000723 | 21 | 0.016 | |
| regulation of cell death | GO:0010941 | 173 | 0.016 | |
| aging | GO:0007568 | 143 | 0.016 | |
| purine containing compound metabolic process | GO:0072521 | 155 | 0.016 | |
| mitotic dna integrity checkpoint | GO:0044774 | 75 | 0.016 | |
| mitochondrial membrane organization | GO:0007006 | 3 | 0.015 | |
| meiotic nuclear division | GO:0007126 | 151 | 0.015 | |
| rna splicing via transesterification reactions | GO:0000375 | 73 | 0.015 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 165 | 0.015 | |
| regulation of cdc42 protein signal transduction | GO:0032489 | 3 | 0.015 | |
| response to other organism | GO:0051707 | 293 | 0.015 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.015 | |
| regulation of striated muscle contraction | GO:0006942 | 2 | 0.014 | |
| negative regulation of intrinsic apoptotic signaling pathway | GO:2001243 | 1 | 0.014 | |
| mitotic cell cycle checkpoint | GO:0007093 | 88 | 0.014 | |
| protein processing | GO:0016485 | 68 | 0.014 | |
| response to organic substance | GO:0010033 | 284 | 0.014 | |
| establishment of rna localization | GO:0051236 | 47 | 0.013 | |
| regulation of localization | GO:0032879 | 275 | 0.013 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.013 | |
| regulation of molecular function | GO:0065009 | 217 | 0.013 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 130 | 0.013 | |
| protein modification process | GO:0036211 | 438 | 0.013 | |
| ribonucleotide metabolic process | GO:0009259 | 145 | 0.013 | |
| positive regulation of multicellular organismal process | GO:0051240 | 143 | 0.013 | |
| eye development | GO:0001654 | 323 | 0.013 | |
| regulation of nuclear division | GO:0051783 | 58 | 0.013 | |
| larval development | GO:0002164 | 104 | 0.013 | Worm |
| positive regulation of binding | GO:0051099 | 4 | 0.013 | |
| rna localization | GO:0006403 | 115 | 0.012 | |
| single organism catabolic process | GO:0044712 | 228 | 0.012 | |
| protein localization | GO:0008104 | 284 | 0.012 | |
| nucleoside phosphate metabolic process | GO:0006753 | 162 | 0.012 | |
| organophosphate catabolic process | GO:0046434 | 112 | 0.012 | |
| covalent chromatin modification | GO:0016569 | 106 | 0.012 | |
| mitotic cell cycle phase transition | GO:0044772 | 138 | 0.012 | |
| chromosome segregation | GO:0007059 | 157 | 0.012 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 204 | 0.012 | |
| posttranscriptional gene silencing | GO:0016441 | 46 | 0.012 | |
| cell chemotaxis involved in malpighian tubule morphogenesis | GO:0061352 | 3 | 0.011 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 118 | 0.011 | |
| response to external biotic stimulus | GO:0043207 | 293 | 0.011 | |
| cellular response to nutrient | GO:0031670 | 1 | 0.011 | |
| protein transport | GO:0015031 | 155 | 0.011 | |
| cell cycle checkpoint | GO:0000075 | 95 | 0.011 | |
| nuclear transcribed mrna catabolic process | GO:0000956 | 24 | 0.011 | |
| chromatin modification | GO:0016568 | 147 | 0.011 | |
| gene silencing | GO:0016458 | 138 | 0.011 | |
| hatching | GO:0035188 | 4 | 0.010 | Worm |
| regulation of cellular localization | GO:0060341 | 136 | 0.010 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.010 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.010 | |
| negative regulation of programmed cell death | GO:0043069 | 72 | 0.010 | |
| homeostatic process | GO:0042592 | 199 | 0.010 | |
| rna transport | GO:0050658 | 46 | 0.010 | |