| rrna processing | GO:0006364 | 3 | 0.929 | Yeast |
| rna processing | GO:0006396 | 147 | 0.443 | Yeast |
| ribosomal large subunit biogenesis | GO:0042273 | 1 | 0.432 | |
| ribonucleoprotein complex biogenesis | GO:0022613 | 31 | 0.188 | Yeast |
| organelle assembly | GO:0070925 | 198 | 0.115 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.106 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 28 | 0.083 | |
| protein complex biogenesis | GO:0070271 | 201 | 0.081 | |
| mrna metabolic process | GO:0016071 | 124 | 0.080 | |
| ribosome biogenesis | GO:0042254 | 8 | 0.079 | Yeast |
| spindle organization | GO:0007051 | 253 | 0.073 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.071 | |
| aromatic compound catabolic process | GO:0019439 | 166 | 0.067 | |
| nucleobase containing compound catabolic process | GO:0034655 | 165 | 0.067 | |
| cellular macromolecular complex assembly | GO:0034622 | 153 | 0.065 | |
| nuclear rna surveillance | GO:0071027 | 3 | 0.065 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.060 | |
| catabolic process | GO:0009056 | 409 | 0.059 | |
| protein complex assembly | GO:0006461 | 200 | 0.058 | |
| reproductive structure development | GO:0048608 | 74 | 0.056 | Worm |
| cellular catabolic process | GO:0044248 | 372 | 0.051 | |
| sex differentiation | GO:0007548 | 81 | 0.051 | Worm |
| development of primary sexual characteristics | GO:0045137 | 50 | 0.048 | Worm |
| spindle assembly | GO:0051225 | 80 | 0.045 | |
| reproductive system development | GO:0061458 | 74 | 0.045 | Worm |
| striated muscle myosin thick filament assembly | GO:0071688 | 3 | 0.042 | |
| immune system process | GO:0002376 | 347 | 0.040 | |
| ncrna metabolic process | GO:0034660 | 43 | 0.040 | Yeast |
| ncrna 3 end processing | GO:0043628 | 17 | 0.038 | |
| cell motility | GO:0048870 | 251 | 0.038 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.037 | |
| establishment of localization in cell | GO:0051649 | 402 | 0.037 | |
| localization of cell | GO:0051674 | 257 | 0.036 | |
| homeostatic process | GO:0042592 | 199 | 0.035 | |
| intracellular transport | GO:0046907 | 228 | 0.035 | |
| gonad development | GO:0008406 | 50 | 0.034 | Worm |
| endocytosis | GO:0006897 | 310 | 0.034 | Worm |
| cellular macromolecule localization | GO:0070727 | 220 | 0.034 | |
| defense response | GO:0006952 | 300 | 0.034 | |
| cytoplasmic transport | GO:0016482 | 130 | 0.034 | |
| ribonucleoprotein complex assembly | GO:0022618 | 23 | 0.033 | |
| rna splicing via transesterification reactions with bulged adenosine as nucleophile | GO:0000377 | 73 | 0.033 | |
| organic substance transport | GO:0071702 | 257 | 0.032 | |
| determination of adult lifespan | GO:0008340 | 137 | 0.032 | |
| negative regulation of intrinsic apoptotic signaling pathway | GO:2001243 | 1 | 0.032 | |
| mitotic spindle organization | GO:0007052 | 220 | 0.031 | |
| cellular component assembly involved in morphogenesis | GO:0010927 | 151 | 0.029 | |
| regulation of immune response | GO:0050776 | 118 | 0.028 | |
| organic cyclic compound catabolic process | GO:1901361 | 168 | 0.028 | |
| defense response to other organism | GO:0098542 | 225 | 0.028 | |
| centrosome organization | GO:0051297 | 163 | 0.028 | |
| spindle assembly involved in mitosis | GO:0090307 | 50 | 0.028 | |
| ncrna processing | GO:0034470 | 30 | 0.028 | Yeast |
| regulation of defense response | GO:0031347 | 102 | 0.027 | |
| protein localization | GO:0008104 | 284 | 0.027 | |
| translation | GO:0006412 | 69 | 0.026 | |
| response to other organism | GO:0051707 | 293 | 0.026 | |
| actomyosin structure organization | GO:0031032 | 56 | 0.025 | |
| organelle fission | GO:0048285 | 340 | 0.024 | Yeast |
| regulation of mitotic cell cycle | GO:0007346 | 190 | 0.024 | |
| regulation of cell cycle process | GO:0010564 | 181 | 0.022 | |
| heterocycle catabolic process | GO:0046700 | 166 | 0.022 | |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.021 | |
| regulation of immune system process | GO:0002682 | 176 | 0.020 | |
| immune response | GO:0006955 | 246 | 0.020 | |
| rna splicing via transesterification reactions | GO:0000375 | 73 | 0.019 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.019 | |
| carbohydrate derivative metabolic process | GO:1901135 | 217 | 0.019 | |
| single organism intracellular transport | GO:1902582 | 207 | 0.018 | |
| larval development | GO:0002164 | 104 | 0.018 | Worm |
| cell migration | GO:0016477 | 238 | 0.018 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.017 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 152 | 0.017 | Worm |
| negative regulation of signal transduction | GO:0009968 | 206 | 0.017 | |
| rna 3 end processing | GO:0031123 | 45 | 0.017 | |
| muscle cell differentiation | GO:0042692 | 103 | 0.017 | |
| cellular protein localization | GO:0034613 | 160 | 0.017 | |
| regulation of rna splicing | GO:0043484 | 69 | 0.017 | |
| genitalia development | GO:0048806 | 26 | 0.016 | Worm |
| nucleocytoplasmic transport | GO:0006913 | 72 | 0.016 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 165 | 0.016 | |
| microtubule cytoskeleton organization involved in mitosis | GO:1902850 | 52 | 0.016 | |
| regulation of multicellular organismal development | GO:2000026 | 414 | 0.016 | |
| growth | GO:0040007 | 359 | 0.016 | |
| nuclear transport | GO:0051169 | 72 | 0.015 | |
| regulation of phosphorus metabolic process | GO:0051174 | 210 | 0.015 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.014 | |
| organelle localization | GO:0051640 | 148 | 0.014 | |
| regulation of innate immune response | GO:0045088 | 71 | 0.014 | |
| snrna metabolic process | GO:0016073 | 14 | 0.014 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.014 | |
| positive regulation of developmental growth | GO:0048639 | 62 | 0.013 | |
| aging | GO:0007568 | 143 | 0.013 | |
| regulation of rac gtpase activity | GO:0032314 | 1 | 0.013 | |
| prostanoid biosynthetic process | GO:0046457 | 1 | 0.013 | |
| mrna catabolic process | GO:0006402 | 33 | 0.013 | |
| regulation of molecular function | GO:0065009 | 217 | 0.013 | |
| mitotic nuclear division | GO:0007067 | 213 | 0.013 | |
| mrna processing | GO:0006397 | 104 | 0.013 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.012 | |
| innate immune response | GO:0045087 | 144 | 0.012 | |
| regulation of phosphate metabolic process | GO:0019220 | 210 | 0.012 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.012 | |
| nuclear division | GO:0000280 | 332 | 0.012 | Yeast |
| vesicle mediated transport | GO:0016192 | 381 | 0.012 | Worm |
| myosin filament organization | GO:0031033 | 5 | 0.012 | |
| wnt signaling pathway | GO:0016055 | 98 | 0.012 | |
| regulation of meiosis | GO:0040020 | 3 | 0.012 | |
| intermediate filament based process | GO:0045103 | 1 | 0.011 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.011 | |
| cell cycle phase transition | GO:0044770 | 140 | 0.011 | |
| rna phosphodiester bond hydrolysis exonucleolytic | GO:0090503 | 4 | 0.011 | |
| regulation of wnt signaling pathway | GO:0030111 | 68 | 0.011 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.011 | |
| negative regulation of response to stimulus | GO:0048585 | 258 | 0.011 | |
| polyadenylation dependent ncrna catabolic process | GO:0043634 | 1 | 0.011 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 174 | 0.010 | |
| establishment of protein localization | GO:0045184 | 163 | 0.010 | |
| negative regulation of gene expression | GO:0010629 | 387 | 0.010 | |
| positive regulation of binding | GO:0051099 | 4 | 0.010 | |
