| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.439 | Fly |
| positive regulation of transcription dna templated | GO:0045893 | 266 | 0.437 | Fly |
| chromatin organization | GO:0006325 | 207 | 0.390 | Fly |
| central nervous system development | GO:0007417 | 201 | 0.387 | Fly |
| chromosome organization | GO:0051276 | 360 | 0.373 | Fly |
| dna metabolic process | GO:0006259 | 227 | 0.308 | Fly |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.289 | Fly |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 204 | 0.263 | Fly |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 266 | 0.255 | Fly |
| positive regulation of rna metabolic process | GO:0051254 | 271 | 0.249 | Fly |
| negative regulation of gene expression | GO:0010629 | 387 | 0.226 | Fly |
| response to other organism | GO:0051707 | 293 | 0.195 | Fly |
| negative regulation of rna biosynthetic process | GO:1902679 | 240 | 0.187 | Fly |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.172 | Fly |
| dna damage checkpoint | GO:0000077 | 78 | 0.149 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.145 | Fly |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.142 | Fly |
| negative regulation of rna metabolic process | GO:0051253 | 251 | 0.117 | Fly |
| regulation of organelle organization | GO:0033043 | 196 | 0.114 | Fly |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.111 | |
| histone lysine demethylation | GO:0070076 | 6 | 0.103 | |
| chromatin modification | GO:0016568 | 147 | 0.101 | |
| negative regulation of cell cycle process | GO:0010948 | 109 | 0.095 | |
| regulation of response to stress | GO:0080134 | 200 | 0.089 | |
| forebrain development | GO:0030900 | 2 | 0.086 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 130 | 0.084 | |
| respiratory system development | GO:0060541 | 213 | 0.083 | Fly |
| regulation of cell development | GO:0060284 | 215 | 0.080 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.078 | Fly |
| regulation of cell cycle | GO:0051726 | 291 | 0.077 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.074 | Fly |
| regulation of chromosome organization | GO:0033044 | 64 | 0.064 | Fly |
| neural precursor cell proliferation | GO:0061351 | 75 | 0.064 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.063 | Fly |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 261 | 0.062 | Fly |
| mitotic cell cycle checkpoint | GO:0007093 | 88 | 0.057 | |
| dendrite development | GO:0016358 | 204 | 0.055 | Fly |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.054 | Fly |
| covalent chromatin modification | GO:0016569 | 106 | 0.051 | |
| adult behavior | GO:0030534 | 137 | 0.051 | |
| cell motility | GO:0048870 | 251 | 0.050 | Fly |
| cellular response to dna damage stimulus | GO:0006974 | 223 | 0.047 | |
| programmed cell death | GO:0012501 | 257 | 0.046 | Fly |
| cellular catabolic process | GO:0044248 | 372 | 0.046 | |
| proteolysis | GO:0006508 | 192 | 0.045 | |
| protein dna complex assembly | GO:0065004 | 63 | 0.044 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 83 | 0.043 | |
| embryonic development via the syncytial blastoderm | GO:0001700 | 148 | 0.042 | Fly |
| organelle fission | GO:0048285 | 340 | 0.040 | Fly |
| negative regulation of mitotic cell cycle | GO:0045930 | 109 | 0.040 | |
| imaginal disc derived appendage development | GO:0048737 | 399 | 0.039 | Fly |
| carboxylic acid metabolic process | GO:0019752 | 92 | 0.039 | |
| regulation of cellular amine metabolic process | GO:0033238 | 3 | 0.037 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.037 | |
| muscle organ development | GO:0007517 | 127 | 0.037 | |
| regulation of mitotic cell cycle | GO:0007346 | 190 | 0.037 | |
| regulation of chromatin organization | GO:1902275 | 32 | 0.036 | Fly |
| response to biotic stimulus | GO:0009607 | 294 | 0.035 | Fly |
| embryonic organ development | GO:0048568 | 50 | 0.033 | |
| negative regulation of biosynthetic process | GO:0009890 | 277 | 0.033 | Fly |
| negative regulation of cell death | GO:0060548 | 81 | 0.033 | |
| mitotic dna integrity checkpoint | GO:0044774 | 75 | 0.033 | |
| appendage morphogenesis | GO:0035107 | 397 | 0.032 | Fly |
| tube development | GO:0035295 | 244 | 0.032 | Fly |
| response to organic cyclic compound | GO:0014070 | 89 | 0.032 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.032 | |
| dendrite morphogenesis | GO:0048813 | 199 | 0.031 | Fly |
| regulation of neurogenesis | GO:0050767 | 158 | 0.031 | |
| regulation of localization | GO:0032879 | 275 | 0.031 | |
| mitotic dna damage checkpoint | GO:0044773 | 74 | 0.031 | |
| cell migration | GO:0016477 | 238 | 0.031 | Fly |
| protein catabolic process | GO:0030163 | 101 | 0.031 | |
| gene silencing | GO:0016458 | 138 | 0.030 | Fly |
| negative regulation of cell differentiation | GO:0045596 | 143 | 0.030 | |
| meiosis i | GO:0007127 | 59 | 0.029 | Fly |
| dna conformation change | GO:0071103 | 105 | 0.029 | Fly |
| negative regulation of neurogenesis | GO:0050768 | 53 | 0.028 | |
| localization of cell | GO:0051674 | 257 | 0.027 | Fly |
| regulation of cell cycle process | GO:0010564 | 181 | 0.027 | |
| organophosphate metabolic process | GO:0019637 | 195 | 0.027 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 240 | 0.027 | Fly |
| macromolecule catabolic process | GO:0009057 | 161 | 0.027 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 78 | 0.026 | |
| modification dependent protein catabolic process | GO:0019941 | 78 | 0.025 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.025 | Fly |
| negative regulation of cell cycle phase transition | GO:1901988 | 103 | 0.025 | |
| histone deacetylation | GO:0016575 | 9 | 0.025 | |
| organic acid metabolic process | GO:0006082 | 103 | 0.025 | |
| regulation of gene expression epigenetic | GO:0040029 | 128 | 0.025 | Fly |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.024 | Fly |
| neuroblast proliferation | GO:0007405 | 74 | 0.024 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 3 | 0.024 | |
| establishment of localization in cell | GO:0051649 | 402 | 0.024 | |
| cell death | GO:0008219 | 279 | 0.024 | Fly |
| amine metabolic process | GO:0009308 | 12 | 0.023 | |
| negative regulation of cell cycle | GO:0045786 | 116 | 0.023 | |
| peptidyl lysine acetylation | GO:0018394 | 39 | 0.022 | |
| brain development | GO:0007420 | 120 | 0.022 | Fly |
| locomotory behavior | GO:0007626 | 176 | 0.022 | Fly |
| regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032434 | 37 | 0.022 | |
| regulation of cellular response to stress | GO:0080135 | 89 | 0.021 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 152 | 0.021 | Fly |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 270 | 0.021 | Fly |
| positive regulation of histone deacetylation | GO:0031065 | 2 | 0.020 | |
| tube morphogenesis | GO:0035239 | 191 | 0.020 | Fly |
| cellular protein modification process | GO:0006464 | 438 | 0.020 | |
| establishment or maintenance of polarity of larval imaginal disc epithelium | GO:0016336 | 3 | 0.020 | |
| dna packaging | GO:0006323 | 91 | 0.020 | Fly |
| oxoacid metabolic process | GO:0043436 | 103 | 0.020 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 0 | 0.020 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 267 | 0.020 | Fly |
| cellular protein catabolic process | GO:0044257 | 83 | 0.019 | |
| response to organic substance | GO:0010033 | 284 | 0.019 | |
| cellular ketone metabolic process | GO:0042180 | 24 | 0.019 | |
| cellular response to chemical stimulus | GO:0070887 | 199 | 0.019 | |
| adult locomotory behavior | GO:0008344 | 76 | 0.019 | |
| head development | GO:0060322 | 135 | 0.019 | Fly |
| negative regulation of nervous system development | GO:0051961 | 92 | 0.019 | |
| compound eye development | GO:0048749 | 307 | 0.018 | Fly |
| dna integrity checkpoint | GO:0031570 | 81 | 0.018 | |
| ribonucleoprotein complex disassembly | GO:0032988 | 1 | 0.018 | |
| negative regulation of programmed cell death | GO:0043069 | 72 | 0.018 | |
| post embryonic appendage morphogenesis | GO:0035120 | 385 | 0.018 | Fly |
| camera type eye development | GO:0043010 | 4 | 0.018 | |
| cellular amino acid metabolic process | GO:0006520 | 61 | 0.018 | |
| regulation of proteolysis | GO:0030162 | 87 | 0.018 | |
| single organism catabolic process | GO:0044712 | 228 | 0.017 | |
| spinal cord development | GO:0021510 | 1 | 0.017 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.017 | |
| protein dna complex subunit organization | GO:0071824 | 86 | 0.017 | |
| cellular amine metabolic process | GO:0044106 | 12 | 0.017 | |
| regulation of multicellular organismal development | GO:2000026 | 414 | 0.017 | Fly |
| death | GO:0016265 | 284 | 0.017 | Fly |
| phagocytosis | GO:0006909 | 215 | 0.016 | |
| heterocycle catabolic process | GO:0046700 | 166 | 0.016 | |
| reproductive behavior | GO:0019098 | 122 | 0.016 | |
| mitotic cell cycle phase transition | GO:0044772 | 138 | 0.016 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.016 | |
| negative regulation of gene expression epigenetic | GO:0045814 | 77 | 0.016 | Fly |
| immune response | GO:0006955 | 246 | 0.016 | Fly |
| response to endogenous stimulus | GO:0009719 | 119 | 0.016 | |
| endocytosis | GO:0006897 | 310 | 0.016 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.016 | |
| taxis | GO:0042330 | 304 | 0.015 | Fly |
| negative regulation of cell development | GO:0010721 | 62 | 0.015 | |
| protein maturation | GO:0051604 | 71 | 0.015 | |
| hindbrain development | GO:0030902 | 2 | 0.015 | |
| organic substance transport | GO:0071702 | 257 | 0.015 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.015 | Fly |
| mitotic nuclear division | GO:0007067 | 213 | 0.015 | |
| aromatic compound catabolic process | GO:0019439 | 166 | 0.015 | |
| regulation of protein catabolic process | GO:0042176 | 55 | 0.015 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 79 | 0.015 | |
| protein modification process | GO:0036211 | 438 | 0.015 | |
| wing disc morphogenesis | GO:0007472 | 344 | 0.015 | Fly |
| telencephalon development | GO:0021537 | 2 | 0.015 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.015 | |
| stem cell proliferation | GO:0072089 | 88 | 0.014 | |
| regulation of catabolic process | GO:0009894 | 170 | 0.014 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.014 | |
| negative regulation of transcription dna templated | GO:0045892 | 237 | 0.014 | Fly |
| reproductive system development | GO:0061458 | 74 | 0.014 | Fly |
| regulation of proteasomal protein catabolic process | GO:0061136 | 39 | 0.014 | |
| regulation of response to external stimulus | GO:0032101 | 115 | 0.014 | |
| negative regulation of mitotic cell cycle phase transition | GO:1901991 | 103 | 0.014 | |
| nucleosome organization | GO:0034728 | 59 | 0.014 | |
| histone methylation | GO:0016571 | 40 | 0.014 | |
| regulation of dna metabolic process | GO:0051052 | 34 | 0.014 | |
| mrna metabolic process | GO:0016071 | 124 | 0.013 | |
| muscle structure development | GO:0061061 | 224 | 0.013 | |
| nucleoside catabolic process | GO:0009164 | 112 | 0.013 | |
| protein acetylation | GO:0006473 | 39 | 0.013 | |
| cell fate specification | GO:0001708 | 71 | 0.013 | Fly |
| positive regulation of epidermal growth factor activated receptor activity | GO:0045741 | 1 | 0.013 | |
| regulation of cellular protein catabolic process | GO:1903362 | 44 | 0.013 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 265 | 0.013 | Fly |
| regulation of cellular catabolic process | GO:0031329 | 157 | 0.013 | |
| positive regulation of catabolic process | GO:0009896 | 105 | 0.012 | |
| regulation of nervous system development | GO:0051960 | 248 | 0.012 | |
| digestive tract morphogenesis | GO:0048546 | 127 | 0.012 | |
| protein complex assembly | GO:0006461 | 200 | 0.012 | |
| chromosome segregation | GO:0007059 | 157 | 0.012 | Fly |
| regulation of immune system process | GO:0002682 | 176 | 0.012 | |
| mitotic g2 dna damage checkpoint | GO:0007095 | 69 | 0.012 | |
| regulation of apoptotic process | GO:0042981 | 130 | 0.012 | |
| positive regulation of multicellular organismal process | GO:0051240 | 143 | 0.011 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.011 | |
| positive regulation of neuron projection regeneration | GO:0070572 | 3 | 0.011 | |
| internal protein amino acid acetylation | GO:0006475 | 38 | 0.011 | |
| formation of a compartment boundary | GO:0060288 | 4 | 0.011 | |
| cellular macromolecular complex assembly | GO:0034622 | 153 | 0.011 | |
| mitochondrial membrane organization | GO:0007006 | 3 | 0.011 | |
| catabolic process | GO:0009056 | 409 | 0.011 | |
| larval development | GO:0002164 | 104 | 0.011 | |
| defense response to other organism | GO:0098542 | 225 | 0.011 | |
| eye morphogenesis | GO:0048592 | 260 | 0.011 | Fly |
| body morphogenesis | GO:0010171 | 2 | 0.011 | |
| heart development | GO:0007507 | 82 | 0.011 | |
| positive regulation of notch signaling pathway | GO:0045747 | 34 | 0.011 | |
| positive regulation of binding | GO:0051099 | 4 | 0.011 | Fly |
| meiotic cell cycle | GO:0051321 | 171 | 0.010 | Fly |
| mating behavior | GO:0007617 | 106 | 0.010 | |
| proteasomal protein catabolic process | GO:0010498 | 59 | 0.010 | |
| regulation of proteolysis involved in cellular protein catabolic process | GO:1903050 | 44 | 0.010 | |
| dna endoreduplication | GO:0042023 | 22 | 0.010 | |
| apoptotic process | GO:0006915 | 159 | 0.010 | Fly |
