| vesicle mediated transport | GO:0016192 | 381 | 0.191 | |
| membrane organization | GO:0061024 | 112 | 0.173 | |
| death | GO:0016265 | 284 | 0.159 | Rat |
| endocytosis | GO:0006897 | 310 | 0.151 | |
| organelle fission | GO:0048285 | 340 | 0.117 | |
| secretion by cell | GO:0032940 | 101 | 0.101 | |
| proteolysis | GO:0006508 | 192 | 0.094 | |
| determination of adult lifespan | GO:0008340 | 137 | 0.079 | |
| catabolic process | GO:0009056 | 409 | 0.078 | |
| cell proliferation | GO:0008283 | 299 | 0.070 | Rat |
| autophagy | GO:0006914 | 108 | 0.070 | |
| negative regulation of gene expression | GO:0010629 | 387 | 0.068 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.066 | |
| nuclear division | GO:0000280 | 332 | 0.065 | |
| establishment of localization in cell | GO:0051649 | 402 | 0.065 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.064 | |
| cellular catabolic process | GO:0044248 | 372 | 0.063 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 240 | 0.063 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.062 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.062 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.060 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 174 | 0.057 | |
| negative regulation of biosynthetic process | GO:0009890 | 277 | 0.055 | Rat |
| cell death | GO:0008219 | 279 | 0.055 | Rat |
| cellular protein modification process | GO:0006464 | 438 | 0.054 | |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.052 | |
| endosomal transport | GO:0016197 | 44 | 0.052 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.050 | |
| carbohydrate derivative metabolic process | GO:1901135 | 217 | 0.049 | |
| protein modification process | GO:0036211 | 438 | 0.049 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 152 | 0.048 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.048 | Rat |
| cellular response to dna damage stimulus | GO:0006974 | 223 | 0.048 | |
| regulation of cell shape | GO:0008360 | 113 | 0.045 | |
| phagocytosis | GO:0006909 | 215 | 0.045 | |
| mitotic nuclear division | GO:0007067 | 213 | 0.045 | |
| single organism membrane organization | GO:0044802 | 93 | 0.044 | |
| phosphorylation | GO:0016310 | 294 | 0.043 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.043 | Rat |
| protein phosphorylation | GO:0006468 | 169 | 0.041 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 119 | 0.041 | |
| establishment of protein localization | GO:0045184 | 163 | 0.040 | |
| modification dependent protein catabolic process | GO:0019941 | 78 | 0.040 | |
| single organism catabolic process | GO:0044712 | 228 | 0.037 | |
| nucleoside phosphate metabolic process | GO:0006753 | 162 | 0.037 | |
| secretion | GO:0046903 | 109 | 0.036 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 240 | 0.034 | |
| rna processing | GO:0006396 | 147 | 0.034 | |
| ribonucleotide metabolic process | GO:0009259 | 145 | 0.034 | |
| programmed cell death | GO:0012501 | 257 | 0.033 | Rat |
| negative regulation of cell communication | GO:0010648 | 223 | 0.032 | |
| protein localization | GO:0008104 | 284 | 0.032 | |
| regulation of cellular catabolic process | GO:0031329 | 157 | 0.030 | |
| nucleoside metabolic process | GO:0009116 | 127 | 0.030 | |
| regulation of organelle organization | GO:0033043 | 196 | 0.029 | |
| regulation of cell cycle process | GO:0010564 | 181 | 0.029 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 85 | 0.029 | |
| single organism intracellular transport | GO:1902582 | 207 | 0.028 | |
| negative regulation of transcription dna templated | GO:0045892 | 237 | 0.028 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.027 | |
| multicellular organismal aging | GO:0010259 | 140 | 0.027 | |
| protein ubiquitination | GO:0016567 | 70 | 0.027 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 261 | 0.026 | |
| nucleotide metabolic process | GO:0009117 | 161 | 0.026 | |
| purine ribonucleotide metabolic process | GO:0009150 | 145 | 0.026 | |
| regulation of notch signaling pathway | GO:0008593 | 100 | 0.025 | |
| aging | GO:0007568 | 143 | 0.025 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.025 | |
| chromosome organization | GO:0051276 | 360 | 0.024 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 265 | 0.024 | |
| intracellular transport | GO:0046907 | 228 | 0.024 | |
| establishment or maintenance of cell polarity | GO:0007163 | 167 | 0.024 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.024 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.024 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.023 | |
| histone modification | GO:0016570 | 106 | 0.022 | |
| regulation of phosphate metabolic process | GO:0019220 | 210 | 0.022 | |
| regulation of phosphorus metabolic process | GO:0051174 | 210 | 0.022 | |
| regulation of cell morphogenesis | GO:0022604 | 163 | 0.022 | |
| negative regulation of signal transduction | GO:0009968 | 206 | 0.021 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 120 | 0.021 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 139 | 0.021 | |
| negative regulation of rna metabolic process | GO:0051253 | 251 | 0.021 | |
| organophosphate metabolic process | GO:0019637 | 195 | 0.021 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.021 | |
| cellular macromolecular complex assembly | GO:0034622 | 153 | 0.020 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 79 | 0.020 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 145 | 0.020 | |
| regulation of response to external stimulus | GO:0032101 | 115 | 0.020 | |
| purine nucleotide metabolic process | GO:0006163 | 146 | 0.020 | |
| ribonucleoside metabolic process | GO:0009119 | 127 | 0.020 | |
| regulation of nuclear division | GO:0051783 | 58 | 0.019 | |
| notch signaling pathway | GO:0007219 | 120 | 0.019 | |
| response to oxygen containing compound | GO:1901700 | 200 | 0.019 | |
| glycosyl compound metabolic process | GO:1901657 | 127 | 0.018 | |
| organelle localization | GO:0051640 | 148 | 0.018 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 117 | 0.018 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 78 | 0.018 | |
| negative regulation of signaling | GO:0023057 | 219 | 0.018 | |
| regulation of catabolic process | GO:0009894 | 170 | 0.018 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.018 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 83 | 0.018 | |
| ribose phosphate metabolic process | GO:0019693 | 145 | 0.018 | |
| cellular metal ion homeostasis | GO:0006875 | 31 | 0.018 | |
| cellular macromolecule localization | GO:0070727 | 220 | 0.018 | |
| organelle assembly | GO:0070925 | 198 | 0.017 | |
| regulation of programmed cell death | GO:0043067 | 152 | 0.016 | Rat |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.016 | |
| protein processing | GO:0016485 | 68 | 0.016 | |
| regulation of localization | GO:0032879 | 275 | 0.016 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 270 | 0.016 | Rat |
| ncrna metabolic process | GO:0034660 | 43 | 0.016 | |
| regulation of multi organism process | GO:0043900 | 131 | 0.016 | |
| purine containing compound metabolic process | GO:0072521 | 155 | 0.016 | |
| cell division | GO:0051301 | 248 | 0.016 | |
| negative regulation of response to stimulus | GO:0048585 | 258 | 0.016 | |
| eye development | GO:0001654 | 323 | 0.016 | |
| protein modification by small protein conjugation | GO:0032446 | 79 | 0.016 | |
| camera type eye development | GO:0043010 | 4 | 0.016 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.016 | Rat |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.016 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 119 | 0.016 | |
| apoptotic process | GO:0006915 | 159 | 0.015 | Rat |
| regulation of meiosis | GO:0040020 | 3 | 0.015 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 165 | 0.015 | |
| positive regulation of signaling | GO:0023056 | 243 | 0.015 | |
| enzyme linked receptor protein signaling pathway | GO:0007167 | 179 | 0.015 | |
| regulation of apoptotic process | GO:0042981 | 130 | 0.015 | Rat |
| positive regulation of phosphate metabolic process | GO:0045937 | 139 | 0.015 | |
| regulation of cell death | GO:0010941 | 173 | 0.015 | Rat |
| protein transport | GO:0015031 | 155 | 0.014 | |
| protein complex biogenesis | GO:0070271 | 201 | 0.014 | |
| response to endogenous stimulus | GO:0009719 | 119 | 0.014 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 106 | 0.014 | |
| cellular response to external stimulus | GO:0071496 | 66 | 0.014 | |
| tissue morphogenesis | GO:0048729 | 297 | 0.014 | |
| purine nucleoside metabolic process | GO:0042278 | 127 | 0.014 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.014 | |
| regulation of autophagy | GO:0010506 | 62 | 0.014 | |
| mrna processing | GO:0006397 | 104 | 0.014 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 119 | 0.014 | |
| organophosphate biosynthetic process | GO:0090407 | 46 | 0.014 | |
| morphogenesis of an epithelium | GO:0002009 | 276 | 0.014 | |
| organic substance transport | GO:0071702 | 257 | 0.013 | |
| embryonic morphogenesis | GO:0048598 | 206 | 0.013 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.013 | |
| single organism behavior | GO:0044708 | 391 | 0.013 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.013 | Rat |
| regulation of cellular component biogenesis | GO:0044087 | 201 | 0.013 | |
| cellular protein localization | GO:0034613 | 160 | 0.013 | |
| negative regulation of cellular component organization | GO:0051129 | 108 | 0.013 | |
| dna metabolic process | GO:0006259 | 227 | 0.013 | |
| regulation of mitotic cell cycle | GO:0007346 | 190 | 0.013 | |
| regulation of proteolysis | GO:0030162 | 87 | 0.013 | |
| protein catabolic process | GO:0030163 | 101 | 0.012 | |
| negative regulation of cell cycle process | GO:0010948 | 109 | 0.012 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.012 | |
| histolysis | GO:0007559 | 102 | 0.012 | |
| epithelial cell differentiation | GO:0030855 | 322 | 0.012 | |
| wing disc morphogenesis | GO:0007472 | 344 | 0.012 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.012 | |
| single organism biosynthetic process | GO:0044711 | 206 | 0.012 | |
| regulation of protein modification process | GO:0031399 | 112 | 0.012 | |
| negative regulation of cell cycle | GO:0045786 | 116 | 0.012 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.012 | |
| chromatin organization | GO:0006325 | 207 | 0.012 | |
| growth | GO:0040007 | 359 | 0.012 | |
| positive regulation of protein metabolic process | GO:0051247 | 128 | 0.012 | |
| negative regulation of molecular function | GO:0044092 | 51 | 0.012 | |
| appendage development | GO:0048736 | 401 | 0.012 | |
| ribonucleotide catabolic process | GO:0009261 | 109 | 0.011 | |
| regulation of cell division | GO:0051302 | 72 | 0.011 | |
| cellular amide metabolic process | GO:0043603 | 80 | 0.011 | |
| endomembrane system organization | GO:0010256 | 119 | 0.011 | |
| body morphogenesis | GO:0010171 | 2 | 0.011 | |
| developmental maturation | GO:0021700 | 172 | 0.011 | |
| positive regulation of signal transduction | GO:0009967 | 223 | 0.011 | |
| nucleoside phosphate catabolic process | GO:1901292 | 110 | 0.011 | |
| gland development | GO:0048732 | 191 | 0.011 | |
| regionalization | GO:0003002 | 416 | 0.011 | |
| protein complex assembly | GO:0006461 | 200 | 0.011 | |
| regulation of molecular function | GO:0065009 | 217 | 0.011 | |
| tissue migration | GO:0090130 | 155 | 0.011 | |
| signal transduction by phosphorylation | GO:0023014 | 107 | 0.011 | |
| chromatin modification | GO:0016568 | 147 | 0.010 | |
| gene silencing | GO:0016458 | 138 | 0.010 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 204 | 0.010 | |
| locomotory behavior | GO:0007626 | 176 | 0.010 | |
| positive regulation of phosphorylation | GO:0042327 | 87 | 0.010 | |
| mrna splicing via spliceosome | GO:0000398 | 73 | 0.010 | |