| protein modification process | GO:0036211 | 438 | 0.200 | Human Rat |
| lateral inhibition | GO:0046331 | 206 | 0.154 | |
| cell cell signaling involved in cell fate commitment | GO:0045168 | 210 | 0.150 | |
| single organism cellular localization | GO:1902580 | 180 | 0.100 | Worm |
| cellular macromolecule localization | GO:0070727 | 220 | 0.095 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.085 | |
| cellular protein modification process | GO:0006464 | 438 | 0.080 | Human Rat |
| regionalization | GO:0003002 | 416 | 0.062 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.062 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 117 | 0.053 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.045 | |
| regulation of cell cycle process | GO:0010564 | 181 | 0.044 | |
| golgi to plasma membrane protein transport | GO:0043001 | 8 | 0.043 | |
| axis specification | GO:0009798 | 167 | 0.041 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.041 | |
| endocytosis | GO:0006897 | 310 | 0.040 | |
| single organism intracellular transport | GO:1902582 | 207 | 0.039 | |
| intracellular transport | GO:0046907 | 228 | 0.037 | |
| anterior posterior pattern specification | GO:0009952 | 136 | 0.037 | |
| cell proliferation | GO:0008283 | 299 | 0.037 | |
| cellular protein localization | GO:0034613 | 160 | 0.036 | |
| spermatid development | GO:0007286 | 98 | 0.036 | |
| establishment of localization in cell | GO:0051649 | 402 | 0.034 | Worm |
| positive regulation of signal transduction | GO:0009967 | 223 | 0.034 | |
| male gamete generation | GO:0048232 | 201 | 0.033 | |
| regulation of mrna metabolic process | GO:1903311 | 72 | 0.032 | |
| sensory organ morphogenesis | GO:0090596 | 260 | 0.032 | |
| body morphogenesis | GO:0010171 | 2 | 0.032 | |
| phosphorylation | GO:0016310 | 294 | 0.031 | |
| digestive system development | GO:0055123 | 149 | 0.031 | |
| protein complex biogenesis | GO:0070271 | 201 | 0.030 | |
| protein phosphorylation | GO:0006468 | 169 | 0.029 | |
| compound eye development | GO:0048749 | 307 | 0.029 | |
| single organism membrane organization | GO:0044802 | 93 | 0.028 | |
| meiotic cell cycle | GO:0051321 | 171 | 0.027 | |
| regulation of multicellular organismal development | GO:2000026 | 414 | 0.027 | |
| protein palmitoylation | GO:0018345 | 2 | 0.026 | |
| imaginal disc derived appendage development | GO:0048737 | 399 | 0.026 | |
| organelle localization | GO:0051640 | 148 | 0.026 | Worm |
| regulation of cellular amine metabolic process | GO:0033238 | 3 | 0.024 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.024 | |
| regulation of mrna splicing via spliceosome | GO:0048024 | 64 | 0.023 | |
| cellular macromolecular complex assembly | GO:0034622 | 153 | 0.023 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.023 | |
| chromosome organization | GO:0051276 | 360 | 0.022 | |
| response to oxygen containing compound | GO:1901700 | 200 | 0.022 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.021 | |
| cell division | GO:0051301 | 248 | 0.021 | |
| spindle organization | GO:0007051 | 253 | 0.021 | |
| eye development | GO:0001654 | 323 | 0.020 | |
| protein localization | GO:0008104 | 284 | 0.020 | |
| chromatin modification | GO:0016568 | 147 | 0.020 | |
| single organism biosynthetic process | GO:0044711 | 206 | 0.020 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 174 | 0.020 | |
| positive regulation of proteolysis | GO:0045862 | 52 | 0.020 | |
| response to biotic stimulus | GO:0009607 | 294 | 0.019 | Zebrafish |
| regulation of cellular component biogenesis | GO:0044087 | 201 | 0.019 | |
| amine metabolic process | GO:0009308 | 12 | 0.019 | |
| rna localization | GO:0006403 | 115 | 0.018 | |
| regulation of transport | GO:0051049 | 181 | 0.018 | |
| regulation of cellular protein catabolic process | GO:1903362 | 44 | 0.018 | |
| regulation of mrna processing | GO:0050684 | 71 | 0.018 | |
| protein transport | GO:0015031 | 155 | 0.018 | |
| forebrain development | GO:0030900 | 2 | 0.018 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.017 | |
| spermatid differentiation | GO:0048515 | 114 | 0.017 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.017 | |
| nucleoside phosphate metabolic process | GO:0006753 | 162 | 0.017 | |
| regulation of phosphorylation | GO:0042325 | 147 | 0.017 | |
| regulation of phosphorus metabolic process | GO:0051174 | 210 | 0.017 | |
| gland development | GO:0048732 | 191 | 0.016 | |
| regulation of rna splicing | GO:0043484 | 69 | 0.016 | |
| regulation of cell differentiation | GO:0045595 | 302 | 0.016 | |
| cellular amino acid metabolic process | GO:0006520 | 61 | 0.016 | |
| response to bacterium | GO:0009617 | 198 | 0.016 | |
| negative regulation of developmental process | GO:0051093 | 201 | 0.016 | |
| cellular response to chemical stimulus | GO:0070887 | 199 | 0.015 | Yeast |
| purine ribonucleotide metabolic process | GO:0009150 | 145 | 0.015 | |
| chromatin organization | GO:0006325 | 207 | 0.015 | |
| regulation of cell proliferation | GO:0042127 | 163 | 0.014 | |
| nucleotide metabolic process | GO:0009117 | 161 | 0.014 | |
| organelle fission | GO:0048285 | 340 | 0.014 | Worm |
| small molecule metabolic process | GO:0044281 | 305 | 0.014 | |
| protein modification by small protein conjugation | GO:0032446 | 79 | 0.014 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.014 | |
| response to organic substance | GO:0010033 | 284 | 0.014 | |
| protein acylation | GO:0043543 | 42 | 0.014 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 145 | 0.014 | |
| adult behavior | GO:0030534 | 137 | 0.014 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 3 | 0.014 | |
| oocyte axis specification | GO:0007309 | 108 | 0.014 | |
| establishment or maintenance of cell polarity | GO:0007163 | 167 | 0.014 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.014 | |
| cellular protein catabolic process | GO:0044257 | 83 | 0.014 | |
| establishment of protein localization | GO:0045184 | 163 | 0.013 | |
| modification dependent protein catabolic process | GO:0019941 | 78 | 0.013 | |
| maintenance of location | GO:0051235 | 73 | 0.013 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 83 | 0.013 | |
| cellular response to organic substance | GO:0071310 | 132 | 0.013 | |
| regulation of localization | GO:0032879 | 275 | 0.013 | |
| cellular catabolic process | GO:0044248 | 372 | 0.013 | |
| chromosome segregation | GO:0007059 | 157 | 0.013 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.013 | |
| golgi to plasma membrane transport | GO:0006893 | 8 | 0.013 | |
| compound eye morphogenesis | GO:0001745 | 249 | 0.013 | |
| protein complex assembly | GO:0006461 | 200 | 0.013 | |
| regulation of molecular function | GO:0065009 | 217 | 0.013 | |
| negative regulation of cellular component organization | GO:0051129 | 108 | 0.013 | |
| protein localization to plasma membrane | GO:0072659 | 13 | 0.012 | |
| protein localization to organelle | GO:0033365 | 82 | 0.012 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.012 | |
| establishment of protein localization to plasma membrane | GO:0090002 | 9 | 0.012 | |
| intracellular mrna localization | GO:0008298 | 66 | 0.012 | |
| regulation of protein modification process | GO:0031399 | 112 | 0.012 | |
| regulation of nervous system development | GO:0051960 | 248 | 0.012 | |
| positive regulation of protein metabolic process | GO:0051247 | 128 | 0.012 | |
| post golgi vesicle mediated transport | GO:0006892 | 11 | 0.012 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.012 | |
| protein catabolic process | GO:0030163 | 101 | 0.012 | |
| regulation of organelle organization | GO:0033043 | 196 | 0.012 | |
| cellular cation homeostasis | GO:0030003 | 38 | 0.012 | |
| growth | GO:0040007 | 359 | 0.012 | |
| alternative mrna splicing via spliceosome | GO:0000380 | 60 | 0.012 | |
| protein polymerization | GO:0051258 | 42 | 0.012 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 261 | 0.011 | |
| death | GO:0016265 | 284 | 0.011 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.011 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.011 | |
| cation homeostasis | GO:0055080 | 51 | 0.011 | |
| protein maturation | GO:0051604 | 71 | 0.011 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 267 | 0.011 | |
| histone modification | GO:0016570 | 106 | 0.011 | |
| stem cell differentiation | GO:0048863 | 117 | 0.011 | |
| carbohydrate derivative metabolic process | GO:1901135 | 217 | 0.011 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.011 | |
| organophosphate metabolic process | GO:0019637 | 195 | 0.011 | |
| negative regulation of gene expression | GO:0010629 | 387 | 0.011 | |
| nuclear division | GO:0000280 | 332 | 0.011 | Worm |
| organic substance transport | GO:0071702 | 257 | 0.011 | |
| negative regulation of signaling | GO:0023057 | 219 | 0.011 | |
| positive regulation of immune response | GO:0050778 | 63 | 0.011 | |
| cellular response to oxygen containing compound | GO:1901701 | 79 | 0.010 | |
| translation | GO:0006412 | 69 | 0.010 | |
| chemical homeostasis | GO:0048878 | 92 | 0.010 | |
| cellular protein complex assembly | GO:0043623 | 71 | 0.010 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.010 | |
| mitochondrion organization | GO:0007005 | 65 | 0.010 | |
