| protein prenylation | GO:0018342 | 3 | 0.601 | |
| establishment of localization in cell | GO:0051649 | 402 | 0.392 | |
| intracellular transport | GO:0046907 | 228 | 0.358 | |
| negative regulation of gene expression | GO:0010629 | 387 | 0.340 | |
| organelle fission | GO:0048285 | 340 | 0.332 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.270 | |
| protein localization | GO:0008104 | 284 | 0.264 | |
| regulation of cell proliferation | GO:0042127 | 163 | 0.260 | |
| positive regulation of rna metabolic process | GO:0051254 | 271 | 0.248 | |
| spindle assembly | GO:0051225 | 80 | 0.226 | |
| establishment of protein localization | GO:0045184 | 163 | 0.184 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.178 | |
| regulation of developmental growth | GO:0048638 | 174 | 0.177 | |
| appendage morphogenesis | GO:0035107 | 397 | 0.157 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.147 | |
| synaptic transmission | GO:0007268 | 288 | 0.140 | |
| single organism intracellular transport | GO:1902582 | 207 | 0.136 | |
| rna localization | GO:0006403 | 115 | 0.126 | |
| protein transport | GO:0015031 | 155 | 0.117 | |
| nuclear division | GO:0000280 | 332 | 0.116 | |
| cellular macromolecule localization | GO:0070727 | 220 | 0.111 | |
| immune system process | GO:0002376 | 347 | 0.109 | |
| mitotic spindle organization | GO:0007052 | 220 | 0.107 | |
| single organism cellular localization | GO:1902580 | 180 | 0.102 | |
| gene silencing | GO:0016458 | 138 | 0.102 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.100 | |
| epithelial cell differentiation | GO:0030855 | 322 | 0.099 | |
| cytoplasmic transport | GO:0016482 | 130 | 0.095 | |
| negative regulation of rna metabolic process | GO:0051253 | 251 | 0.091 | |
| establishment or maintenance of cell polarity | GO:0007163 | 167 | 0.087 | |
| positive regulation of multicellular organismal process | GO:0051240 | 143 | 0.087 | |
| immune response | GO:0006955 | 246 | 0.086 | |
| microtubule based transport | GO:0010970 | 42 | 0.078 | |
| positive regulation of developmental growth | GO:0048639 | 62 | 0.077 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 152 | 0.077 | |
| positive regulation of developmental process | GO:0051094 | 143 | 0.077 | |
| wnt signaling pathway | GO:0016055 | 98 | 0.072 | |
| protein acylation | GO:0043543 | 42 | 0.071 | |
| tube morphogenesis | GO:0035239 | 191 | 0.071 | |
| eye development | GO:0001654 | 323 | 0.070 | |
| morphogenesis of an epithelium | GO:0002009 | 276 | 0.069 | |
| microtubule based movement | GO:0007018 | 51 | 0.065 | |
| cellular macromolecular complex assembly | GO:0034622 | 153 | 0.065 | |
| regulation of multicellular organismal development | GO:2000026 | 414 | 0.065 | |
| cell death | GO:0008219 | 279 | 0.063 | |
| intracellular protein transport | GO:0006886 | 104 | 0.061 | |
| organic substance transport | GO:0071702 | 257 | 0.061 | |
| regulation of growth | GO:0040008 | 233 | 0.060 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.059 | |
| negative regulation of biosynthetic process | GO:0009890 | 277 | 0.059 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.059 | |
| ras protein signal transduction | GO:0007265 | 88 | 0.059 | |
| peptidyl lysine acetylation | GO:0018394 | 39 | 0.058 | |
| cell proliferation | GO:0008283 | 299 | 0.055 | |
| regulation of cell cycle process | GO:0010564 | 181 | 0.055 | |
| proteolysis | GO:0006508 | 192 | 0.054 | |
| phosphorylation | GO:0016310 | 294 | 0.052 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 270 | 0.051 | |
| mitotic nuclear division | GO:0007067 | 213 | 0.050 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 204 | 0.050 | |
| appendage development | GO:0048736 | 401 | 0.049 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.049 | |
| immune response regulating signaling pathway | GO:0002764 | 2 | 0.048 | |
| tissue morphogenesis | GO:0048729 | 297 | 0.047 | |
| cellular protein localization | GO:0034613 | 160 | 0.047 | |
| phenol containing compound metabolic process | GO:0018958 | 57 | 0.047 | |
| endocytosis | GO:0006897 | 310 | 0.046 | |
| protein modification by small protein conjugation | GO:0032446 | 79 | 0.046 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.046 | |
| positive regulation of signal transduction | GO:0009967 | 223 | 0.045 | |
| cell fate determination | GO:0001709 | 91 | 0.045 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.044 | |
| synapse organization | GO:0050808 | 196 | 0.043 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.043 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.043 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.043 | |
| cell division | GO:0051301 | 248 | 0.042 | |
| localization of cell | GO:0051674 | 257 | 0.042 | |
| developmental growth | GO:0048589 | 280 | 0.042 | |
| organelle localization | GO:0051640 | 148 | 0.042 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.042 | |
| multicellular organism growth | GO:0035264 | 46 | 0.041 | |
| intracellular signal transduction | GO:0035556 | 300 | 0.041 | |
| notch signaling pathway | GO:0007219 | 120 | 0.041 | |
| cellular protein modification process | GO:0006464 | 438 | 0.040 | |
| rna transport | GO:0050658 | 46 | 0.040 | |
| positive regulation of growth | GO:0045927 | 75 | 0.040 | |
| organelle assembly | GO:0070925 | 198 | 0.039 | |
| digestive tract development | GO:0048565 | 149 | 0.038 | |
| response to radiation | GO:0009314 | 155 | 0.038 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.037 | |
| imaginal disc derived wing morphogenesis | GO:0007476 | 337 | 0.037 | |
| epithelium migration | GO:0090132 | 148 | 0.036 | |
| negative regulation of cell communication | GO:0010648 | 223 | 0.036 | |
| protein modification process | GO:0036211 | 438 | 0.036 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 145 | 0.036 | |
| erk1 and erk2 cascade | GO:0070371 | 39 | 0.035 | |
| post embryonic appendage morphogenesis | GO:0035120 | 385 | 0.035 | |
| protein complex assembly | GO:0006461 | 200 | 0.035 | |
| tube development | GO:0035295 | 244 | 0.035 | |
| photoreceptor cell differentiation | GO:0046530 | 170 | 0.035 | |
| immune effector process | GO:0002252 | 98 | 0.034 | |
| regulation of mitotic cell cycle | GO:0007346 | 190 | 0.034 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.034 | |
| negative regulation of cell cycle | GO:0045786 | 116 | 0.033 | |
| growth | GO:0040007 | 359 | 0.033 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.033 | |
| protein geranylgeranylation | GO:0018344 | 3 | 0.032 | |
| dendrite development | GO:0016358 | 204 | 0.032 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.032 | |
| positive regulation of protein metabolic process | GO:0051247 | 128 | 0.032 | |
| cytoskeleton dependent intracellular transport | GO:0030705 | 44 | 0.032 | |
| negative regulation of signaling | GO:0023057 | 219 | 0.032 | |
| positive regulation of transport | GO:0051050 | 92 | 0.032 | |
| small gtpase mediated signal transduction | GO:0007264 | 88 | 0.032 | |
| regulation of multicellular organism growth | GO:0040014 | 40 | 0.031 | |
| regulation of intracellular signal transduction | GO:1902531 | 236 | 0.031 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 240 | 0.030 | |
| regulation of molecular function | GO:0065009 | 217 | 0.030 | |
| negative regulation of signal transduction | GO:0009968 | 206 | 0.029 | |
| chromosome organization | GO:0051276 | 360 | 0.029 | |
| spinal cord development | GO:0021510 | 1 | 0.029 | |
| negative regulation of response to stimulus | GO:0048585 | 258 | 0.029 | |
| negative regulation of cell cycle process | GO:0010948 | 109 | 0.028 | |
| endomembrane system organization | GO:0010256 | 119 | 0.028 | |
| body morphogenesis | GO:0010171 | 2 | 0.028 | |
| defense response to fungus | GO:0050832 | 48 | 0.028 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.027 | |
| skeletal muscle fiber development | GO:0048741 | 3 | 0.027 | |
| protein acetylation | GO:0006473 | 39 | 0.027 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.027 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 139 | 0.027 | |
| regulation of proteolysis | GO:0030162 | 87 | 0.026 | |
| regulation of cellular amine metabolic process | GO:0033238 | 3 | 0.026 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 118 | 0.026 | |
| cellular catabolic process | GO:0044248 | 372 | 0.026 | |
| compound eye morphogenesis | GO:0001745 | 249 | 0.026 | |
| regulation of immune system process | GO:0002682 | 176 | 0.025 | |
| regulation of anatomical structure morphogenesis | GO:0022603 | 242 | 0.025 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 240 | 0.025 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 139 | 0.025 | |
| neuron projection guidance | GO:0097485 | 241 | 0.025 | |
| sensory organ morphogenesis | GO:0090596 | 260 | 0.024 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 106 | 0.024 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 265 | 0.024 | |
| regulation of chromosome organization | GO:0033044 | 64 | 0.023 | |
| regulation of phosphorus metabolic process | GO:0051174 | 210 | 0.023 | |
| dendrite morphogenesis | GO:0048813 | 199 | 0.023 | |
| cellular response to extracellular stimulus | GO:0031668 | 64 | 0.023 | |
| regulation of cell differentiation | GO:0045595 | 302 | 0.023 | |
| mapk cascade | GO:0000165 | 107 | 0.023 | |
| lateral inhibition | GO:0046331 | 206 | 0.023 | |
| regulation of wnt signaling pathway | GO:0030111 | 68 | 0.023 | |
| nitrogen compound transport | GO:0071705 | 85 | 0.023 | |
| spindle organization | GO:0007051 | 253 | 0.023 | |
| regulation of mapk cascade | GO:0043408 | 92 | 0.022 | |
| positive regulation of multicellular organism growth | GO:0040018 | 21 | 0.022 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 3 | 0.022 | |
| cellular response to dna damage stimulus | GO:0006974 | 223 | 0.022 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 165 | 0.022 | |
| nucleobase containing compound catabolic process | GO:0034655 | 165 | 0.022 | |
| response to lipopolysaccharide | GO:0032496 | 4 | 0.022 | |
| digestive tract morphogenesis | GO:0048546 | 127 | 0.021 | |
| neuromuscular junction development | GO:0007528 | 149 | 0.021 | |
| positive regulation of signaling | GO:0023056 | 243 | 0.021 | |
| cell adhesion | GO:0007155 | 136 | 0.021 | |
| cell cell signaling involved in cell fate commitment | GO:0045168 | 210 | 0.021 | |
| protein catabolic process | GO:0030163 | 101 | 0.021 | |
| mitochondrion localization | GO:0051646 | 17 | 0.020 | |
| histone acetylation | GO:0016573 | 38 | 0.020 | |
| imaginal disc derived appendage morphogenesis | GO:0035114 | 395 | 0.020 | |
| defense response to bacterium | GO:0042742 | 178 | 0.020 | |
| positive regulation of nervous system development | GO:0051962 | 69 | 0.020 | |
| regionalization | GO:0003002 | 416 | 0.020 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 267 | 0.019 | |
| myotube cell development | GO:0014904 | 3 | 0.019 | |
| regulation of phosphorylation | GO:0042325 | 147 | 0.019 | |
| cellular response to external stimulus | GO:0071496 | 66 | 0.019 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.019 | |
| imaginal disc fusion | GO:0046528 | 19 | 0.019 | |
| chemotaxis | GO:0006935 | 249 | 0.019 | |
| protein heterooligomerization | GO:0051291 | 4 | 0.018 | |
| negative regulation of epithelial cell proliferation | GO:0050680 | 4 | 0.018 | |
| wing disc morphogenesis | GO:0007472 | 344 | 0.018 | |
| protein complex biogenesis | GO:0070271 | 201 | 0.018 | |
| compound eye photoreceptor development | GO:0042051 | 78 | 0.018 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 266 | 0.018 | |
| humoral immune response | GO:0006959 | 117 | 0.018 | |
| cellular protein complex assembly | GO:0043623 | 71 | 0.018 | |
| imaginal disc derived appendage development | GO:0048737 | 399 | 0.018 | |
| apoptotic signaling pathway | GO:0097190 | 27 | 0.017 | |
| establishment of rna localization | GO:0051236 | 47 | 0.017 | |
| muscle structure development | GO:0061061 | 224 | 0.017 | |
| protein maturation | GO:0051604 | 71 | 0.017 | |
| regulation of cell shape | GO:0008360 | 113 | 0.017 | |
| regulation of translation | GO:0006417 | 56 | 0.017 | |
| positive regulation of transcription dna templated | GO:0045893 | 266 | 0.017 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.017 | |
| autophagy | GO:0006914 | 108 | 0.017 | |
| taxis | GO:0042330 | 304 | 0.017 | |
| regulation of cellular localization | GO:0060341 | 136 | 0.016 | |
| cellular amine metabolic process | GO:0044106 | 12 | 0.016 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.016 | |
| regulation of synapse structure and activity | GO:0050803 | 128 | 0.016 | |
| response to fungus | GO:0009620 | 50 | 0.016 | |
| axon cargo transport | GO:0008088 | 29 | 0.016 | |
| cellular response to nutrient levels | GO:0031669 | 62 | 0.016 | |
| rna catabolic process | GO:0006401 | 37 | 0.016 | |
| regulation of hydrolase activity | GO:0051336 | 97 | 0.016 | |
| digestive system development | GO:0055123 | 149 | 0.016 | |
| muscle organ development | GO:0007517 | 127 | 0.015 | |
| regulation of cell death | GO:0010941 | 173 | 0.015 | |
| establishment or maintenance of bipolar cell polarity | GO:0061245 | 34 | 0.015 | |
| cellular component assembly involved in morphogenesis | GO:0010927 | 151 | 0.015 | |
| compound eye photoreceptor cell differentiation | GO:0001751 | 140 | 0.015 | |
| axon development | GO:0061564 | 297 | 0.015 | |
| regulation of organelle organization | GO:0033043 | 196 | 0.015 | |
| response to extracellular stimulus | GO:0009991 | 116 | 0.015 | |
| immune response activating signal transduction | GO:0002757 | 2 | 0.015 | |
| positive regulation of nucleocytoplasmic transport | GO:0046824 | 24 | 0.015 | |
| protein targeting | GO:0006605 | 64 | 0.015 | |
| cell cycle arrest | GO:0007050 | 4 | 0.015 | |
| cellular response to chemical stimulus | GO:0070887 | 199 | 0.015 | |
| mitotic g2 dna damage checkpoint | GO:0007095 | 69 | 0.015 | |
| internal peptidyl lysine acetylation | GO:0018393 | 38 | 0.015 | |
| cytokinesis | GO:0000910 | 90 | 0.015 | |
| morphogenesis of a polarized epithelium | GO:0001738 | 93 | 0.015 | |
| histone h4 acetylation | GO:0043967 | 13 | 0.015 | |
| membrane organization | GO:0061024 | 112 | 0.014 | |
| protein import | GO:0017038 | 55 | 0.014 | |
| negative regulation of transcription dna templated | GO:0045892 | 237 | 0.014 | |
| protein processing | GO:0016485 | 68 | 0.014 | |
| regulation of phosphate metabolic process | GO:0019220 | 210 | 0.014 | |
| columnar cuboidal epithelial cell differentiation | GO:0002065 | 256 | 0.014 | |
| male meiosis | GO:0007140 | 52 | 0.014 | |
| positive regulation of intracellular transport | GO:0032388 | 42 | 0.014 | |
| regulation of intracellular transport | GO:0032386 | 64 | 0.014 | |
| mitotic g2 m transition checkpoint | GO:0044818 | 70 | 0.014 | |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.014 | |
| proteasomal protein catabolic process | GO:0010498 | 59 | 0.014 | |
| nuclear transport | GO:0051169 | 72 | 0.013 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 83 | 0.013 | |
| catabolic process | GO:0009056 | 409 | 0.013 | |
| multi organism behavior | GO:0051705 | 175 | 0.013 | |
| cellular ketone metabolic process | GO:0042180 | 24 | 0.013 | |
| camera type eye development | GO:0043010 | 4 | 0.013 | |
| negative regulation of mitotic cell cycle | GO:0045930 | 109 | 0.013 | |
| centrosome organization | GO:0051297 | 163 | 0.013 | |
| positive regulation of wnt signaling pathway | GO:0030177 | 25 | 0.013 | |
| ovarian follicle cell development | GO:0030707 | 248 | 0.013 | |
| protein secretion | GO:0009306 | 45 | 0.013 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.013 | |
| secondary metabolic process | GO:0019748 | 75 | 0.013 | |
| biological adhesion | GO:0022610 | 138 | 0.013 | |
| actin filament depolymerization | GO:0030042 | 5 | 0.013 | |
| death | GO:0016265 | 284 | 0.012 | |
| phagocytosis | GO:0006909 | 215 | 0.012 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 261 | 0.012 | |
| regulation of transport | GO:0051049 | 181 | 0.012 | |
| positive regulation of phosphorylation | GO:0042327 | 87 | 0.012 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.012 | |
| heterocycle catabolic process | GO:0046700 | 166 | 0.012 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.012 | |
| response to oxidative stress | GO:0006979 | 86 | 0.012 | |
| regulation of mrna processing | GO:0050684 | 71 | 0.012 | |
| embryonic morphogenesis | GO:0048598 | 206 | 0.012 | |
| regulation of endopeptidase activity | GO:0052548 | 36 | 0.012 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.012 | |
| compound eye development | GO:0048749 | 307 | 0.012 | |
| protein kinase b signaling | GO:0043491 | 1 | 0.012 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 54 | 0.012 | |
| epithelial cell development | GO:0002064 | 274 | 0.012 | |
| response to organic substance | GO:0010033 | 284 | 0.012 | |
| positive regulation of erk1 and erk2 cascade | GO:0070374 | 36 | 0.012 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 0 | 0.012 | |
| aromatic compound catabolic process | GO:0019439 | 166 | 0.011 | |
| photoreceptor cell development | GO:0042461 | 96 | 0.011 | |
| regulation of erk1 and erk2 cascade | GO:0070372 | 39 | 0.011 | |
| regulation of phosphatase activity | GO:0010921 | 3 | 0.011 | |
| response to nutrient levels | GO:0031667 | 114 | 0.011 | |
| cellular response to molecule of bacterial origin | GO:0071219 | 3 | 0.011 | |
| regulation of cysteine type endopeptidase activity | GO:2000116 | 27 | 0.011 | |
| regulation of response to stress | GO:0080134 | 200 | 0.011 | |
| regulation of small gtpase mediated signal transduction | GO:0051056 | 93 | 0.011 | |
| nucleobase containing compound transport | GO:0015931 | 56 | 0.011 | |
| protein ubiquitination | GO:0016567 | 70 | 0.011 | |
| nephron development | GO:0072006 | 3 | 0.011 | |
| retina development in camera type eye | GO:0060041 | 4 | 0.011 | |
| columnar cuboidal epithelial cell development | GO:0002066 | 249 | 0.011 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.011 | |
| regulation of nucleotide metabolic process | GO:0006140 | 62 | 0.011 | |
| organic cyclic compound catabolic process | GO:1901361 | 168 | 0.011 | |
| regulation of cellular response to stress | GO:0080135 | 89 | 0.010 | |
| defense response | GO:0006952 | 300 | 0.010 | |
| regulation of nucleocytoplasmic transport | GO:0046822 | 35 | 0.010 | |
| regulation of defense response | GO:0031347 | 102 | 0.010 | |
| organ growth | GO:0035265 | 56 | 0.010 | |
| skeletal muscle organ development | GO:0060538 | 48 | 0.010 | |
| amine metabolic process | GO:0009308 | 12 | 0.010 | |
| protein palmitoylation | GO:0018345 | 2 | 0.010 | |
| protein localization to organelle | GO:0033365 | 82 | 0.010 | |
| antimicrobial humoral response | GO:0019730 | 99 | 0.010 | |
| renal tubule development | GO:0061326 | 64 | 0.010 | |
| regulation of actin cytoskeleton organization | GO:0032956 | 42 | 0.010 | |
| multicellular organismal reproductive behavior | GO:0033057 | 110 | 0.010 | |
| carbohydrate derivative metabolic process | GO:1901135 | 217 | 0.010 | |
| regulation of cell size | GO:0008361 | 63 | 0.010 | |
| extrinsic apoptotic signaling pathway | GO:0097191 | 1 | 0.010 | |
| signal transduction by phosphorylation | GO:0023014 | 107 | 0.010 | |
| melanin metabolic process | GO:0006582 | 47 | 0.010 | |