| membrane budding | GO:0006900 | 4 | 0.359 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.278 | |
| vacuolar transport | GO:0007034 | 13 | 0.165 | Yeast |
| single organism intracellular transport | GO:1902582 | 207 | 0.144 | Yeast |
| endosomal transport | GO:0016197 | 44 | 0.125 | Yeast |
| regulation of multi organism process | GO:0043900 | 131 | 0.122 | |
| negative regulation of cell communication | GO:0010648 | 223 | 0.117 | |
| purine containing compound metabolic process | GO:0072521 | 155 | 0.113 | |
| negative regulation of signal transduction | GO:0009968 | 206 | 0.112 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.096 | |
| endocytosis | GO:0006897 | 310 | 0.093 | |
| microtubule organizing center organization | GO:0031023 | 168 | 0.087 | |
| single organism cellular localization | GO:1902580 | 180 | 0.086 | |
| interspecies interaction between organisms | GO:0044419 | 16 | 0.085 | |
| negative regulation of signaling | GO:0023057 | 219 | 0.085 | |
| single organism membrane budding | GO:1902591 | 2 | 0.078 | |
| establishment or maintenance of cell polarity | GO:0007163 | 167 | 0.077 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.077 | |
| actin filament based process | GO:0030029 | 220 | 0.076 | |
| intracellular transport | GO:0046907 | 228 | 0.075 | Yeast |
| cytoplasmic transport | GO:0016482 | 130 | 0.073 | Yeast |
| regulation of growth | GO:0040008 | 233 | 0.068 | |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.067 | |
| ribose phosphate metabolic process | GO:0019693 | 145 | 0.067 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 120 | 0.063 | |
| negative regulation of response to stimulus | GO:0048585 | 258 | 0.063 | |
| regulation of erbb signaling pathway | GO:1901184 | 42 | 0.063 | |
| catabolic process | GO:0009056 | 409 | 0.063 | |
| membrane organization | GO:0061024 | 112 | 0.062 | |
| enzyme linked receptor protein signaling pathway | GO:0007167 | 179 | 0.061 | |
| nucleoside metabolic process | GO:0009116 | 127 | 0.061 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 79 | 0.060 | |
| negative regulation of erbb signaling pathway | GO:1901185 | 29 | 0.060 | |
| homeostatic process | GO:0042592 | 199 | 0.060 | |
| establishment of localization in cell | GO:0051649 | 402 | 0.058 | Yeast |
| negative regulation of biosynthetic process | GO:0009890 | 277 | 0.055 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 78 | 0.054 | |
| regulation of organelle organization | GO:0033043 | 196 | 0.053 | |
| single organism membrane organization | GO:0044802 | 93 | 0.053 | |
| protein complex biogenesis | GO:0070271 | 201 | 0.053 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.052 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 119 | 0.052 | |
| protein localization | GO:0008104 | 284 | 0.051 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.051 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 119 | 0.049 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.049 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.048 | |
| ribonucleotide metabolic process | GO:0009259 | 145 | 0.047 | |
| intracellular signal transduction | GO:0035556 | 300 | 0.047 | |
| purine nucleotide metabolic process | GO:0006163 | 146 | 0.047 | |
| purine nucleoside metabolic process | GO:0042278 | 127 | 0.045 | |
| carbohydrate derivative metabolic process | GO:1901135 | 217 | 0.045 | |
| cellular protein catabolic process | GO:0044257 | 83 | 0.045 | |
| eye development | GO:0001654 | 323 | 0.045 | |
| ribonucleoside metabolic process | GO:0009119 | 127 | 0.044 | |
| nucleoside phosphate metabolic process | GO:0006753 | 162 | 0.044 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 261 | 0.044 | |
| transmembrane receptor protein tyrosine kinase signaling pathway | GO:0007169 | 116 | 0.043 | |
| regulation of cell morphogenesis | GO:0022604 | 163 | 0.043 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 265 | 0.043 | |
| nucleotide metabolic process | GO:0009117 | 161 | 0.042 | |
| purine ribonucleoside metabolic process | GO:0046128 | 127 | 0.042 | |
| actin cytoskeleton organization | GO:0030036 | 206 | 0.041 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 174 | 0.041 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 240 | 0.041 | |
| modification dependent protein catabolic process | GO:0019941 | 78 | 0.041 | |
| atp metabolic process | GO:0046034 | 49 | 0.040 | |
| vesicle organization | GO:0016050 | 44 | 0.040 | |
| epithelial cell differentiation | GO:0030855 | 322 | 0.040 | |
| growth | GO:0040007 | 359 | 0.039 | Yeast |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 240 | 0.039 | |
| cellular protein complex assembly | GO:0043623 | 71 | 0.038 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 119 | 0.038 | |
| cation homeostasis | GO:0055080 | 51 | 0.037 | |
| purine ribonucleotide metabolic process | GO:0009150 | 145 | 0.036 | |
| chemical homeostasis | GO:0048878 | 92 | 0.035 | |
| regulation of intracellular signal transduction | GO:1902531 | 236 | 0.035 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.034 | |
| regulation of secretion by cell | GO:1903530 | 39 | 0.034 | |
| ribonucleoside catabolic process | GO:0042454 | 112 | 0.034 | |
| organic substance transport | GO:0071702 | 257 | 0.034 | |
| ion homeostasis | GO:0050801 | 55 | 0.034 | |
| phagocytosis | GO:0006909 | 215 | 0.033 | |
| cell cell signaling involved in cell fate commitment | GO:0045168 | 210 | 0.033 | |
| organic cyclic compound catabolic process | GO:1901361 | 168 | 0.033 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.033 | |
| regionalization | GO:0003002 | 416 | 0.033 | |
| response to organic substance | GO:0010033 | 284 | 0.033 | |
| regulation of cellular component biogenesis | GO:0044087 | 201 | 0.033 | |
| autophagy | GO:0006914 | 108 | 0.033 | |
| cellular cation homeostasis | GO:0030003 | 38 | 0.033 | |
| ubiquitin dependent protein catabolic process via the multivesicular body sorting pathway | GO:0043162 | 8 | 0.033 | |
| chromosome organization | GO:0051276 | 360 | 0.032 | |
| protein catabolic process | GO:0030163 | 101 | 0.032 | |
| organophosphate metabolic process | GO:0019637 | 195 | 0.032 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.031 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.031 | |
| proteolysis | GO:0006508 | 192 | 0.031 | |
| heterocycle catabolic process | GO:0046700 | 166 | 0.030 | |
| mitotic cell cycle checkpoint | GO:0007093 | 88 | 0.030 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.030 | |
| regulation of response to stress | GO:0080134 | 200 | 0.030 | |
| protein complex assembly | GO:0006461 | 200 | 0.030 | |
| cellular ion homeostasis | GO:0006873 | 39 | 0.030 | |
| nucleobase containing compound catabolic process | GO:0034655 | 165 | 0.029 | |
| negative regulation of rna metabolic process | GO:0051253 | 251 | 0.029 | |
| regulation of symbiosis encompassing mutualism through parasitism | GO:0043903 | 15 | 0.029 | |
| body morphogenesis | GO:0010171 | 2 | 0.029 | |
| cellular response to chemical stimulus | GO:0070887 | 199 | 0.028 | |
| regulation of mitotic cell cycle | GO:0007346 | 190 | 0.028 | |
| cation transport | GO:0006812 | 110 | 0.028 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.028 | |
| centrosome cycle | GO:0007098 | 137 | 0.028 | |
| compound eye development | GO:0048749 | 307 | 0.027 | |
| purine nucleoside catabolic process | GO:0006152 | 112 | 0.027 | |
| cellular catabolic process | GO:0044248 | 372 | 0.027 | |
| organelle assembly | GO:0070925 | 198 | 0.027 | |
| ribonucleoside monophosphate metabolic process | GO:0009161 | 51 | 0.026 | |
| purine containing compound catabolic process | GO:0072523 | 112 | 0.025 | |
| centrosome organization | GO:0051297 | 163 | 0.025 | |
| organonitrogen compound catabolic process | GO:1901565 | 128 | 0.025 | |
| symbiosis encompassing mutualism through parasitism | GO:0044403 | 16 | 0.025 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 145 | 0.025 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.025 | |
| establishment of protein localization | GO:0045184 | 163 | 0.025 | |
| cellular homeostasis | GO:0019725 | 80 | 0.024 | |
| negative regulation of cell cycle | GO:0045786 | 116 | 0.024 | |
| regulation of developmental growth | GO:0048638 | 174 | 0.024 | |
| aromatic compound catabolic process | GO:0019439 | 166 | 0.024 | |
| secretion | GO:0046903 | 109 | 0.023 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 270 | 0.023 | |
| protein transport | GO:0015031 | 155 | 0.023 | |
| endosome transport via multivesicular body sorting pathway | GO:0032509 | 12 | 0.023 | Yeast |
| cellular macromolecular complex assembly | GO:0034622 | 153 | 0.023 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 108 | 0.023 | |
| purine ribonucleoside catabolic process | GO:0046130 | 112 | 0.023 | |
| localization of cell | GO:0051674 | 257 | 0.023 | |
| negative regulation of gene expression | GO:0010629 | 387 | 0.022 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 266 | 0.022 | |
| glycosyl compound metabolic process | GO:1901657 | 127 | 0.022 | |
| cell motility | GO:0048870 | 251 | 0.022 | |
| negative regulation of transcription dna templated | GO:0045892 | 237 | 0.022 | |
| regulation of anatomical structure morphogenesis | GO:0022603 | 242 | 0.022 | |
| regulation of notch signaling pathway | GO:0008593 | 100 | 0.022 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 165 | 0.021 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.021 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 83 | 0.021 | |
| eye morphogenesis | GO:0048592 | 260 | 0.021 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 139 | 0.021 | |
| centrosome duplication | GO:0051298 | 121 | 0.021 | |
| ovarian follicle cell development | GO:0030707 | 248 | 0.021 | |
| molting cycle | GO:0042303 | 56 | 0.021 | |
| cellular chemical homeostasis | GO:0055082 | 40 | 0.021 | |
| regulation of transport | GO:0051049 | 181 | 0.021 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 108 | 0.020 | |
| epidermal growth factor receptor signaling pathway | GO:0007173 | 58 | 0.020 | |
| cell division | GO:0051301 | 248 | 0.019 | |
| cellular protein modification process | GO:0006464 | 438 | 0.019 | |
| actin filament organization | GO:0007015 | 126 | 0.019 | |
| regulation of anatomical structure size | GO:0090066 | 163 | 0.019 | |
| cellular macromolecule localization | GO:0070727 | 220 | 0.019 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.019 | |
| regulation of nervous system development | GO:0051960 | 248 | 0.019 | |
| erbb signaling pathway | GO:0038127 | 58 | 0.019 | |
| regulation of multicellular organismal development | GO:2000026 | 414 | 0.019 | |
| negative regulation of growth | GO:0045926 | 84 | 0.018 | |
| purine nucleoside monophosphate metabolic process | GO:0009126 | 50 | 0.018 | |
| negative regulation of epidermal growth factor receptor signaling pathway | GO:0042059 | 29 | 0.018 | |
| mitotic spindle organization | GO:0007052 | 220 | 0.018 | |
| metal ion transport | GO:0030001 | 74 | 0.018 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.018 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.018 | |
| oocyte axis specification | GO:0007309 | 108 | 0.018 | |
| negative regulation of cell cycle process | GO:0010948 | 109 | 0.018 | |
| positive regulation of exocytosis | GO:0045921 | 4 | 0.018 | |
| spindle organization | GO:0007051 | 253 | 0.018 | |
| regulation of gene expression epigenetic | GO:0040029 | 128 | 0.018 | |
| axon guidance | GO:0007411 | 233 | 0.017 | |
| regulation of cell shape | GO:0008360 | 113 | 0.017 | |
| epithelial cell development | GO:0002064 | 274 | 0.017 | |
| developmental growth | GO:0048589 | 280 | 0.017 | |
| gtp metabolic process | GO:0046039 | 72 | 0.017 | |
| negative regulation of cellular component organization | GO:0051129 | 108 | 0.017 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.017 | |
| regulation of phosphate metabolic process | GO:0019220 | 210 | 0.017 | |
| regulation of cellular response to stress | GO:0080135 | 89 | 0.017 | |
| regulation of cell cycle process | GO:0010564 | 181 | 0.017 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 106 | 0.016 | |
| organelle fission | GO:0048285 | 340 | 0.016 | |
| carbohydrate derivative catabolic process | GO:1901136 | 118 | 0.016 | |
| establishment of protein localization to organelle | GO:0072594 | 62 | 0.016 | |
| cell proliferation | GO:0008283 | 299 | 0.016 | |
| nucleoside phosphate catabolic process | GO:1901292 | 110 | 0.016 | |
| neurological system process | GO:0050877 | 358 | 0.016 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.016 | |
| exocytosis | GO:0006887 | 28 | 0.016 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.016 | |
| regulation of cellular localization | GO:0060341 | 136 | 0.016 | |
| embryonic pattern specification | GO:0009880 | 174 | 0.016 | |
| positive regulation of secretion by cell | GO:1903532 | 20 | 0.016 | |
| regulation of phosphorus metabolic process | GO:0051174 | 210 | 0.015 | |
| nucleoside monophosphate metabolic process | GO:0009123 | 52 | 0.015 | |
| guanosine containing compound catabolic process | GO:1901069 | 74 | 0.015 | |
| negative regulation of gene expression epigenetic | GO:0045814 | 77 | 0.015 | |
| nuclear division | GO:0000280 | 332 | 0.015 | |
| regulation of apoptotic process | GO:0042981 | 130 | 0.015 | |
| compound eye morphogenesis | GO:0001745 | 249 | 0.015 | |
| negative regulation of cell cycle phase transition | GO:1901988 | 103 | 0.015 | |
| appendage morphogenesis | GO:0035107 | 397 | 0.015 | |
| response to radiation | GO:0009314 | 155 | 0.015 | |
| cell migration | GO:0016477 | 238 | 0.015 | |
| cellular response to organic substance | GO:0071310 | 132 | 0.015 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 108 | 0.015 | |
| viral life cycle | GO:0019058 | 7 | 0.015 | |
| purine nucleotide catabolic process | GO:0006195 | 109 | 0.015 | |
| mitotic cell cycle phase transition | GO:0044772 | 138 | 0.015 | |
| regulation of cellular catabolic process | GO:0031329 | 157 | 0.015 | |
| guanosine containing compound metabolic process | GO:1901068 | 74 | 0.015 | |
| lateral inhibition | GO:0046331 | 206 | 0.015 | |
| positive regulation of catabolic process | GO:0009896 | 105 | 0.015 | |
| regulation of molecular function | GO:0065009 | 217 | 0.015 | |
| secretion by cell | GO:0032940 | 101 | 0.015 | |
| intracellular protein transport | GO:0006886 | 104 | 0.014 | |
| response to biotic stimulus | GO:0009607 | 294 | 0.014 | |
| glycosyl compound catabolic process | GO:1901658 | 112 | 0.014 | |
| regulation of epidermal growth factor receptor signaling pathway | GO:0042058 | 42 | 0.014 | |
| regulation of hydrolase activity | GO:0051336 | 97 | 0.014 | |
| determination of adult lifespan | GO:0008340 | 137 | 0.014 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 108 | 0.014 | |
| purine ribonucleoside monophosphate metabolic process | GO:0009167 | 50 | 0.014 | |
| ribonucleotide catabolic process | GO:0009261 | 109 | 0.014 | |
| morphogenesis of an epithelium | GO:0002009 | 276 | 0.014 | |
| divalent inorganic cation homeostasis | GO:0072507 | 29 | 0.014 | |
| photoreceptor cell differentiation | GO:0046530 | 170 | 0.014 | |
| regulation of vesicle mediated transport | GO:0060627 | 59 | 0.014 | |
| purine containing compound biosynthetic process | GO:0072522 | 30 | 0.014 | |
| organophosphate catabolic process | GO:0046434 | 112 | 0.013 | |
| positive regulation of signaling | GO:0023056 | 243 | 0.013 | |
| ion transport | GO:0006811 | 145 | 0.013 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.013 | |
| negative regulation of organelle organization | GO:0010639 | 56 | 0.013 | |
| single organism catabolic process | GO:0044712 | 228 | 0.013 | |
| positive regulation of cellular component organization | GO:0051130 | 156 | 0.013 | |
| chemotaxis | GO:0006935 | 249 | 0.013 | |
| protein ubiquitination | GO:0016567 | 70 | 0.013 | |
| forebrain development | GO:0030900 | 2 | 0.013 | |
| small gtpase mediated signal transduction | GO:0007264 | 88 | 0.013 | |
| appendage development | GO:0048736 | 401 | 0.013 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.013 | |
| regulation of localization | GO:0032879 | 275 | 0.013 | |
| apoptotic process | GO:0006915 | 159 | 0.013 | |
| programmed cell death | GO:0012501 | 257 | 0.013 | |
| nucleoside catabolic process | GO:0009164 | 112 | 0.013 | |
| cell death | GO:0008219 | 279 | 0.013 | |
| segmentation | GO:0035282 | 207 | 0.013 | |
| multicellular organismal aging | GO:0010259 | 140 | 0.013 | |
| metal ion homeostasis | GO:0055065 | 44 | 0.012 | |
| columnar cuboidal epithelial cell differentiation | GO:0002065 | 256 | 0.012 | |
| gene silencing | GO:0016458 | 138 | 0.012 | |
| lipid metabolic process | GO:0006629 | 121 | 0.012 | |
| regulation of cytoskeleton organization | GO:0051493 | 89 | 0.012 | |
| mitotic spindle elongation | GO:0000022 | 81 | 0.012 | |
| response to starvation | GO:0042594 | 97 | 0.012 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.012 | |
| regulation of nucleotide metabolic process | GO:0006140 | 62 | 0.012 | |
| developmental maturation | GO:0021700 | 172 | 0.012 | |
| mitotic nuclear division | GO:0007067 | 213 | 0.012 | |
| synapse organization | GO:0050808 | 196 | 0.012 | |
| positive regulation of cellular component biogenesis | GO:0044089 | 80 | 0.012 | |
| immune system process | GO:0002376 | 347 | 0.012 | |
| maintenance of location | GO:0051235 | 73 | 0.012 | |
| purine ribonucleotide catabolic process | GO:0009154 | 109 | 0.011 | |
| protein modification process | GO:0036211 | 438 | 0.011 | |
| chromatin silencing | GO:0006342 | 76 | 0.011 | |
| taxis | GO:0042330 | 304 | 0.011 | |
| ras protein signal transduction | GO:0007265 | 88 | 0.011 | |
| notch signaling pathway | GO:0007219 | 120 | 0.011 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 152 | 0.011 | |
| adult behavior | GO:0030534 | 137 | 0.011 | |
| compound eye photoreceptor cell differentiation | GO:0001751 | 140 | 0.011 | |
| positive regulation of intracellular signal transduction | GO:1902533 | 116 | 0.011 | |
| response to unfolded protein | GO:0006986 | 9 | 0.011 | |
| regulation of cell projection organization | GO:0031344 | 92 | 0.011 | |
| negative regulation of mitotic cell cycle phase transition | GO:1901991 | 103 | 0.011 | |
| positive regulation of transport | GO:0051050 | 92 | 0.011 | |
| protein dna complex subunit organization | GO:0071824 | 86 | 0.011 | |
| dendrite morphogenesis | GO:0048813 | 199 | 0.011 | |
| single organism behavior | GO:0044708 | 391 | 0.011 | |
| nucleotide catabolic process | GO:0009166 | 109 | 0.011 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 118 | 0.011 | |
| regulation of cell differentiation | GO:0045595 | 302 | 0.011 | |
| regulation of cellular component size | GO:0032535 | 98 | 0.010 | |
| aging | GO:0007568 | 143 | 0.010 | |
| columnar cuboidal epithelial cell development | GO:0002066 | 249 | 0.010 | |
| regulation of proteolysis involved in cellular protein catabolic process | GO:1903050 | 44 | 0.010 | |
| death | GO:0016265 | 284 | 0.010 | |
| positive regulation of multi organism process | GO:0043902 | 40 | 0.010 | |
| proteasomal protein catabolic process | GO:0010498 | 59 | 0.010 | |
| negative regulation of developmental process | GO:0051093 | 201 | 0.010 | |
| protein modification by small protein conjugation | GO:0032446 | 79 | 0.010 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.010 | |
| cellular response to dna damage stimulus | GO:0006974 | 223 | 0.010 | |
| response to external biotic stimulus | GO:0043207 | 293 | 0.010 | |
