| establishment of localization in cell | GO:0051649 | 402 | 0.108 | Yeast |
| response to temperature stimulus | GO:0009266 | 106 | 0.102 | |
| catabolic process | GO:0009056 | 409 | 0.090 | |
| cellular catabolic process | GO:0044248 | 372 | 0.090 | |
| protein localization | GO:0008104 | 284 | 0.080 | Yeast |
| organic cyclic compound catabolic process | GO:1901361 | 168 | 0.066 | |
| organic substance transport | GO:0071702 | 257 | 0.062 | Yeast |
| dna metabolic process | GO:0006259 | 227 | 0.061 | |
| single organism intracellular transport | GO:1902582 | 207 | 0.061 | Yeast |
| cellular protein localization | GO:0034613 | 160 | 0.057 | Yeast |
| vesicle mediated transport | GO:0016192 | 381 | 0.049 | |
| single organism cellular localization | GO:1902580 | 180 | 0.049 | Yeast |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.048 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.047 | |
| single organism catabolic process | GO:0044712 | 228 | 0.045 | |
| regulation of organelle organization | GO:0033043 | 196 | 0.043 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.041 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.041 | |
| endocytosis | GO:0006897 | 310 | 0.040 | |
| heterocycle catabolic process | GO:0046700 | 166 | 0.039 | |
| organophosphate metabolic process | GO:0019637 | 195 | 0.039 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.036 | |
| aromatic compound catabolic process | GO:0019439 | 166 | 0.036 | |
| cellular macromolecule localization | GO:0070727 | 220 | 0.034 | Yeast |
| intracellular transport | GO:0046907 | 228 | 0.033 | Yeast |
| purine ribonucleotide metabolic process | GO:0009150 | 145 | 0.032 | |
| nucleobase containing compound catabolic process | GO:0034655 | 165 | 0.031 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 174 | 0.030 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.030 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.030 | |
| ribonucleotide metabolic process | GO:0009259 | 145 | 0.029 | |
| phagocytosis | GO:0006909 | 215 | 0.029 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.028 | |
| regulation of response to stress | GO:0080134 | 200 | 0.028 | |
| nucleoside phosphate metabolic process | GO:0006753 | 162 | 0.028 | |
| protein transport | GO:0015031 | 155 | 0.027 | Yeast |
| establishment of protein localization | GO:0045184 | 163 | 0.027 | Yeast |
| intracellular signal transduction | GO:0035556 | 300 | 0.027 | |
| regulation of localization | GO:0032879 | 275 | 0.026 | |
| death | GO:0016265 | 284 | 0.026 | |
| positive regulation of signaling | GO:0023056 | 243 | 0.026 | |
| immune system process | GO:0002376 | 347 | 0.026 | |
| cytoplasmic transport | GO:0016482 | 130 | 0.026 | Yeast |
| organonitrogen compound biosynthetic process | GO:1901566 | 117 | 0.025 | |
| nucleotide metabolic process | GO:0009117 | 161 | 0.025 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 165 | 0.025 | |
| purine nucleotide metabolic process | GO:0006163 | 146 | 0.024 | |
| lateral inhibition | GO:0046331 | 206 | 0.023 | |
| growth | GO:0040007 | 359 | 0.023 | |
| regulation of cell cycle process | GO:0010564 | 181 | 0.023 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.022 | |
| mrna metabolic process | GO:0016071 | 124 | 0.022 | |
| oxoacid metabolic process | GO:0043436 | 103 | 0.022 | |
| phospholipid homeostasis | GO:0055091 | 1 | 0.022 | |
| regulation of defense response | GO:0031347 | 102 | 0.022 | |
| rna processing | GO:0006396 | 147 | 0.021 | |
| intracellular protein transmembrane transport | GO:0065002 | 4 | 0.021 | Yeast |
| response to external biotic stimulus | GO:0043207 | 293 | 0.021 | |
| regulation of innate immune response | GO:0045088 | 71 | 0.020 | |
| transmembrane transport | GO:0055085 | 139 | 0.020 | Yeast |
| developmental growth | GO:0048589 | 280 | 0.020 | |
| defense response to other organism | GO:0098542 | 225 | 0.019 | |
| protein targeting | GO:0006605 | 64 | 0.019 | Yeast |
| response to abiotic stimulus | GO:0009628 | 341 | 0.019 | |
| regulation of programmed cell death | GO:0043067 | 152 | 0.019 | |
| cell cell signaling involved in cell fate commitment | GO:0045168 | 210 | 0.019 | |
| ribose phosphate metabolic process | GO:0019693 | 145 | 0.019 | |
| regulation of transport | GO:0051049 | 181 | 0.019 | |
| regulation of cell death | GO:0010941 | 173 | 0.019 | |
| cellular response to dna damage stimulus | GO:0006974 | 223 | 0.018 | |
| sensory perception of mechanical stimulus | GO:0050954 | 72 | 0.018 | |
| mitochondrion organization | GO:0007005 | 65 | 0.018 | Yeast |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.018 | |
| programmed cell death | GO:0012501 | 257 | 0.018 | |
| nucleotide catabolic process | GO:0009166 | 109 | 0.018 | |
| homeostatic process | GO:0042592 | 199 | 0.017 | |
| intracellular protein transport | GO:0006886 | 104 | 0.017 | Yeast |
| spindle organization | GO:0007051 | 253 | 0.017 | |
| purine containing compound metabolic process | GO:0072521 | 155 | 0.017 | |
| mrna splicing via spliceosome | GO:0000398 | 73 | 0.017 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 265 | 0.017 | |
| rna splicing via transesterification reactions | GO:0000375 | 73 | 0.017 | |
| negative regulation of gene expression | GO:0010629 | 387 | 0.016 | |
| response to other organism | GO:0051707 | 293 | 0.016 | |
| regionalization | GO:0003002 | 416 | 0.016 | |
| amine metabolic process | GO:0009308 | 12 | 0.016 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.016 | |
| response to nutrient levels | GO:0031667 | 114 | 0.016 | |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.016 | |
| positive regulation of hydrolase activity | GO:0051345 | 78 | 0.016 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.016 | |
| cellular cation homeostasis | GO:0030003 | 38 | 0.016 | |
| cellular amine metabolic process | GO:0044106 | 12 | 0.015 | |
| cell death | GO:0008219 | 279 | 0.015 | |
| positive regulation of intracellular signal transduction | GO:1902533 | 116 | 0.015 | |
| purine ribonucleoside metabolic process | GO:0046128 | 127 | 0.015 | |
| regulation of hydrolase activity | GO:0051336 | 97 | 0.015 | |
| cation transport | GO:0006812 | 110 | 0.015 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.015 | |
| positive regulation of molecular function | GO:0044093 | 136 | 0.015 | |
| gland development | GO:0048732 | 191 | 0.015 | |
| response to biotic stimulus | GO:0009607 | 294 | 0.015 | |
| organonitrogen compound catabolic process | GO:1901565 | 128 | 0.014 | |
| negative regulation of response to stimulus | GO:0048585 | 258 | 0.014 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 139 | 0.014 | |
| membrane organization | GO:0061024 | 112 | 0.014 | |
| ion homeostasis | GO:0050801 | 55 | 0.014 | |
| dendrite development | GO:0016358 | 204 | 0.014 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 261 | 0.014 | |
| regulation of growth | GO:0040008 | 233 | 0.014 | |
| positive regulation of programmed cell death | GO:0043068 | 62 | 0.014 | |
| mrna catabolic process | GO:0006402 | 33 | 0.014 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 85 | 0.014 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 120 | 0.014 | |
| cell cycle checkpoint | GO:0000075 | 95 | 0.014 | |
| cholesterol homeostasis | GO:0042632 | 3 | 0.014 | |
| dendrite morphogenesis | GO:0048813 | 199 | 0.014 | |
| cell fate determination | GO:0001709 | 91 | 0.013 | |
| cellular transition metal ion homeostasis | GO:0046916 | 9 | 0.013 | |
| cellular metal ion homeostasis | GO:0006875 | 31 | 0.013 | |
| positive regulation of catabolic process | GO:0009896 | 105 | 0.013 | |
| protein transmembrane transport | GO:0071806 | 4 | 0.013 | Yeast |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.013 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 119 | 0.013 | |
| wing disc morphogenesis | GO:0007472 | 344 | 0.013 | |
| proteolysis | GO:0006508 | 192 | 0.013 | |
| response to bacterium | GO:0009617 | 198 | 0.013 | |
| body morphogenesis | GO:0010171 | 2 | 0.013 | |
| sterol homeostasis | GO:0055092 | 4 | 0.013 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 119 | 0.012 | |
| defense response | GO:0006952 | 300 | 0.012 | |
| chromatin modification | GO:0016568 | 147 | 0.012 | |
| protein complex biogenesis | GO:0070271 | 201 | 0.012 | |
| sensory perception | GO:0007600 | 196 | 0.012 | |
| male gamete generation | GO:0048232 | 201 | 0.012 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.012 | |
| inorganic ion transmembrane transport | GO:0098660 | 73 | 0.012 | |
| organophosphate catabolic process | GO:0046434 | 112 | 0.012 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 240 | 0.012 | |
| ion transport | GO:0006811 | 145 | 0.012 | |
| rna splicing via transesterification reactions with bulged adenosine as nucleophile | GO:0000377 | 73 | 0.012 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 270 | 0.012 | |
| head development | GO:0060322 | 135 | 0.012 | |
| regulation of immune response | GO:0050776 | 118 | 0.012 | |
| adult behavior | GO:0030534 | 137 | 0.012 | |
| negative regulation of programmed cell death | GO:0043069 | 72 | 0.011 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 139 | 0.011 | |
| negative regulation of cellular component organization | GO:0051129 | 108 | 0.011 | |
| cell cycle phase transition | GO:0044770 | 140 | 0.011 | |
| ribonucleoside metabolic process | GO:0009119 | 127 | 0.011 | |
| chromatin organization | GO:0006325 | 207 | 0.011 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 130 | 0.011 | |
| developmental maturation | GO:0021700 | 172 | 0.011 | |
| rna transport | GO:0050658 | 46 | 0.011 | |
| positive regulation of transport | GO:0051050 | 92 | 0.011 | |
| histone modification | GO:0016570 | 106 | 0.011 | |
| immune response | GO:0006955 | 246 | 0.011 | |
| purine nucleoside catabolic process | GO:0006152 | 112 | 0.011 | |
| regulation of apoptotic process | GO:0042981 | 130 | 0.011 | |
| dorsal ventral pattern formation | GO:0009953 | 133 | 0.011 | |
| maintenance of location | GO:0051235 | 73 | 0.011 | |
| negative regulation of signaling | GO:0023057 | 219 | 0.011 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.011 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 119 | 0.011 | |
| cellular response to chemical stimulus | GO:0070887 | 199 | 0.011 | |
| cellular amino acid metabolic process | GO:0006520 | 61 | 0.011 | |
| response to oxygen containing compound | GO:1901700 | 200 | 0.010 | |
| chromosome organization | GO:0051276 | 360 | 0.010 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.010 | |
| cellular iron ion homeostasis | GO:0006879 | 3 | 0.010 | |
| carbohydrate derivative metabolic process | GO:1901135 | 217 | 0.010 | |
| single organism membrane organization | GO:0044802 | 93 | 0.010 | |
| chromatin silencing | GO:0006342 | 76 | 0.010 | |
| segmentation | GO:0035282 | 207 | 0.010 | |
| negative regulation of mitotic cell cycle | GO:0045930 | 109 | 0.010 | |
| response to heat | GO:0009408 | 63 | 0.010 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.010 | |