| synapse organization | GO:0050808 | 196 | 0.141 | |
| regulation of cellular component biogenesis | GO:0044087 | 201 | 0.120 | |
| regulation of synapse structure and activity | GO:0050803 | 128 | 0.105 | |
| regulation of anatomical structure morphogenesis | GO:0022603 | 242 | 0.088 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.080 | |
| positive regulation of signaling | GO:0023056 | 243 | 0.073 | |
| regulation of synapse assembly | GO:0051963 | 94 | 0.072 | |
| regulation of cell shape | GO:0008360 | 113 | 0.071 | |
| positive regulation of signal transduction | GO:0009967 | 223 | 0.070 | |
| regulation of nervous system development | GO:0051960 | 248 | 0.067 | |
| regulation of synaptic growth at neuromuscular junction | GO:0008582 | 89 | 0.067 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.066 | |
| intracellular signal transduction | GO:0035556 | 300 | 0.055 | Mouse |
| regulation of synapse organization | GO:0050807 | 110 | 0.054 | |
| chemotaxis | GO:0006935 | 249 | 0.053 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.053 | |
| synapse assembly | GO:0007416 | 143 | 0.050 | |
| phosphorylation | GO:0016310 | 294 | 0.048 | |
| protein phosphorylation | GO:0006468 | 169 | 0.045 | |
| protein modification process | GO:0036211 | 438 | 0.043 | |
| axon guidance | GO:0007411 | 233 | 0.041 | |
| single organism intracellular transport | GO:1902582 | 207 | 0.040 | |
| transmembrane transport | GO:0055085 | 139 | 0.039 | |
| regulation of multicellular organismal development | GO:2000026 | 414 | 0.038 | |
| immune system process | GO:0002376 | 347 | 0.036 | |
| actin cytoskeleton organization | GO:0030036 | 206 | 0.035 | Mouse |
| organic substance transport | GO:0071702 | 257 | 0.035 | Rat |
| actin filament based process | GO:0030029 | 220 | 0.035 | Mouse |
| tissue morphogenesis | GO:0048729 | 297 | 0.034 | |
| developmental maturation | GO:0021700 | 172 | 0.034 | |
| camera type eye development | GO:0043010 | 4 | 0.034 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 266 | 0.033 | |
| neuromuscular junction development | GO:0007528 | 149 | 0.033 | |
| limb development | GO:0060173 | 1 | 0.032 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 139 | 0.032 | |
| cell adhesion | GO:0007155 | 136 | 0.030 | |
| cellular catabolic process | GO:0044248 | 372 | 0.030 | |
| response to biotic stimulus | GO:0009607 | 294 | 0.030 | |
| morphogenesis of an epithelium | GO:0002009 | 276 | 0.029 | |
| establishment or maintenance of cell polarity | GO:0007163 | 167 | 0.029 | |
| cellular macromolecular complex assembly | GO:0034622 | 153 | 0.028 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.028 | |
| embryonic morphogenesis | GO:0048598 | 206 | 0.028 | |
| circulatory system development | GO:0072359 | 82 | 0.028 | |
| oxoacid metabolic process | GO:0043436 | 103 | 0.026 | |
| single organism carbohydrate metabolic process | GO:0044723 | 72 | 0.026 | Rat |
| cellular protein modification process | GO:0006464 | 438 | 0.025 | |
| wnt signaling pathway | GO:0016055 | 98 | 0.025 | |
| ion transport | GO:0006811 | 145 | 0.025 | |
| organic acid metabolic process | GO:0006082 | 103 | 0.025 | |
| neuron projection guidance | GO:0097485 | 241 | 0.024 | |
| organophosphate metabolic process | GO:0019637 | 195 | 0.024 | |
| nephron tubule morphogenesis | GO:0072078 | 3 | 0.024 | |
| establishment or maintenance of cytoskeleton polarity | GO:0030952 | 44 | 0.023 | |
| blastoderm segmentation | GO:0007350 | 159 | 0.022 | |
| regulation of cell morphogenesis | GO:0022604 | 163 | 0.022 | |
| immune response | GO:0006955 | 246 | 0.022 | |
| response to bacterium | GO:0009617 | 198 | 0.021 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 139 | 0.021 | |
| cellular component assembly involved in morphogenesis | GO:0010927 | 151 | 0.020 | |
| appendage morphogenesis | GO:0035107 | 397 | 0.020 | |
| positive regulation of transcription dna templated | GO:0045893 | 266 | 0.020 | |
| homeostatic process | GO:0042592 | 199 | 0.019 | |
| death | GO:0016265 | 284 | 0.019 | |
| lateral inhibition | GO:0046331 | 206 | 0.019 | |
| endocytosis | GO:0006897 | 310 | 0.019 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.019 | |
| response to other organism | GO:0051707 | 293 | 0.018 | |
| sensory perception of mechanical stimulus | GO:0050954 | 72 | 0.018 | |
| chaeta development | GO:0022416 | 97 | 0.018 | |
| regulation of phosphorus metabolic process | GO:0051174 | 210 | 0.018 | |
| regulation of transport | GO:0051049 | 181 | 0.018 | |
| positive regulation of intracellular signal transduction | GO:1902533 | 116 | 0.018 | |
| carbohydrate derivative metabolic process | GO:1901135 | 217 | 0.018 | |
| epithelial cell differentiation | GO:0030855 | 322 | 0.017 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.017 | |
| regulation of localization | GO:0032879 | 275 | 0.017 | Mouse |
| organic substance catabolic process | GO:1901575 | 308 | 0.017 | |
| regulation of wnt signaling pathway | GO:0030111 | 68 | 0.017 | |
| positive regulation of cellular component organization | GO:0051130 | 156 | 0.017 | |
| cellular carbohydrate metabolic process | GO:0044262 | 22 | 0.017 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.017 | |
| single organism biosynthetic process | GO:0044711 | 206 | 0.017 | |
| imaginal disc derived appendage development | GO:0048737 | 399 | 0.017 | |
| positive regulation of rna metabolic process | GO:0051254 | 271 | 0.017 | |
| intracellular protein transport | GO:0006886 | 104 | 0.017 | |
| actin filament organization | GO:0007015 | 126 | 0.017 | |
| neuromuscular synaptic transmission | GO:0007274 | 67 | 0.017 | |
| regulation of immune response | GO:0050776 | 118 | 0.017 | |
| intracellular transport | GO:0046907 | 228 | 0.016 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.016 | |
| neurological system process | GO:0050877 | 358 | 0.016 | |
| phosphatidylethanolamine metabolic process | GO:0046337 | 1 | 0.016 | |
| establishment of protein localization | GO:0045184 | 163 | 0.016 | |
| oxidation reduction process | GO:0055114 | 123 | 0.016 | |
| cell cell junction organization | GO:0045216 | 55 | 0.016 | |
| modification dependent protein catabolic process | GO:0019941 | 78 | 0.016 | |
| eye morphogenesis | GO:0048592 | 260 | 0.016 | |
| response to external biotic stimulus | GO:0043207 | 293 | 0.015 | |
| segmentation | GO:0035282 | 207 | 0.015 | |
| phagocytosis | GO:0006909 | 215 | 0.015 | |
| humoral immune response | GO:0006959 | 117 | 0.015 | |
| cell cell signaling involved in cell fate commitment | GO:0045168 | 210 | 0.015 | |
| regulation of phosphate metabolic process | GO:0019220 | 210 | 0.015 | |
| axis specification | GO:0009798 | 167 | 0.015 | |
| cellular homeostasis | GO:0019725 | 80 | 0.015 | |
| cytosolic calcium ion transport | GO:0060401 | 2 | 0.015 | |
| anterior posterior axis specification | GO:0009948 | 109 | 0.015 | |
| establishment of localization in cell | GO:0051649 | 402 | 0.015 | Rat |
| regulation of molecular function | GO:0065009 | 217 | 0.015 | |
| positive regulation of molecular function | GO:0044093 | 136 | 0.015 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.014 | |
| regulation of cellular localization | GO:0060341 | 136 | 0.014 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.014 | |
| proteasomal protein catabolic process | GO:0010498 | 59 | 0.014 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 78 | 0.014 | |
| growth | GO:0040007 | 359 | 0.014 | |
| extracellular structure organization | GO:0043062 | 46 | 0.014 | |
| cell division | GO:0051301 | 248 | 0.014 | |
| response to organic substance | GO:0010033 | 284 | 0.014 | |
| regulation of cell death | GO:0010941 | 173 | 0.014 | |
| body morphogenesis | GO:0010171 | 2 | 0.014 | |
| protein polymerization | GO:0051258 | 42 | 0.014 | |
| regulation of intracellular signal transduction | GO:1902531 | 236 | 0.014 | |
| nephron epithelium development | GO:0072009 | 3 | 0.013 | |
| positive regulation of protein metabolic process | GO:0051247 | 128 | 0.013 | |
| regulation of cell projection organization | GO:0031344 | 92 | 0.013 | |
| ameboidal type cell migration | GO:0001667 | 151 | 0.013 | |
| cell growth | GO:0016049 | 108 | 0.013 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.013 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.013 | |
| cellular protein catabolic process | GO:0044257 | 83 | 0.013 | |
| stem cell division | GO:0017145 | 69 | 0.013 | |
| limb morphogenesis | GO:0035108 | 1 | 0.013 | |
| regulation of cytoskeleton organization | GO:0051493 | 89 | 0.012 | |
| epithelium migration | GO:0090132 | 148 | 0.012 | |
| cellular protein complex disassembly | GO:0043624 | 35 | 0.012 | |
| cell projection assembly | GO:0030031 | 94 | 0.012 | |
| response to radiation | GO:0009314 | 155 | 0.012 | |
| regulation of sequestering of calcium ion | GO:0051282 | 3 | 0.012 | |
| columnar cuboidal epithelial cell differentiation | GO:0002065 | 256 | 0.012 | |
| cell motility | GO:0048870 | 251 | 0.012 | Mouse |
| ras protein signal transduction | GO:0007265 | 88 | 0.012 | Mouse |
| endomembrane system organization | GO:0010256 | 119 | 0.012 | |
| lysosomal transport | GO:0007041 | 13 | 0.012 | |
| small gtpase mediated signal transduction | GO:0007264 | 88 | 0.012 | Mouse |
| synaptic growth at neuromuscular junction | GO:0051124 | 119 | 0.012 | |
| gland development | GO:0048732 | 191 | 0.012 | |
| lipid metabolic process | GO:0006629 | 121 | 0.012 | |
| central nervous system development | GO:0007417 | 201 | 0.012 | |
| mesenchymal cell differentiation | GO:0048762 | 1 | 0.012 | |
| amine metabolic process | GO:0009308 | 12 | 0.012 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 54 | 0.011 | |
| morphogenesis of embryonic epithelium | GO:0016331 | 94 | 0.011 | |
| biological adhesion | GO:0022610 | 138 | 0.011 | |
| regulation of establishment of protein localization | GO:0070201 | 61 | 0.011 | |
| cell maturation | GO:0048469 | 144 | 0.011 | |
| positive regulation of transport | GO:0051050 | 92 | 0.011 | |
| secretion by cell | GO:0032940 | 101 | 0.011 | Rat |
| positive regulation of cellular component biogenesis | GO:0044089 | 80 | 0.011 | |
| tube development | GO:0035295 | 244 | 0.011 | |
| positive regulation of catalytic activity | GO:0043085 | 118 | 0.011 | |
| negative regulation of sequestering of calcium ion | GO:0051283 | 2 | 0.011 | |
| developmental growth | GO:0048589 | 280 | 0.011 | |
| semaphorin plexin signaling pathway involved in regulation of photoreceptor cell axon guidance | GO:2000305 | 2 | 0.011 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.011 | |
| cardiovascular system development | GO:0072358 | 82 | 0.010 | |
| sensory perception | GO:0007600 | 196 | 0.010 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 204 | 0.010 | |
| ovarian follicle cell development | GO:0030707 | 248 | 0.010 | |
| embryonic pattern specification | GO:0009880 | 174 | 0.010 | |
| regulation of innate immune response | GO:0045088 | 71 | 0.010 | |
| positive regulation of apoptotic process | GO:0043065 | 47 | 0.010 | |
| digestive tract morphogenesis | GO:0048546 | 127 | 0.010 | |
| regulation of notch signaling pathway | GO:0008593 | 100 | 0.010 | |
| regulation of protein modification process | GO:0031399 | 112 | 0.010 | |
| organic hydroxy compound metabolic process | GO:1901615 | 83 | 0.010 | |
| cation transport | GO:0006812 | 110 | 0.010 | |
