| chromosome organization | GO:0051276 | 360 | 0.086 | |
| cellular protein modification process | GO:0006464 | 438 | 0.076 | |
| oxoacid metabolic process | GO:0043436 | 103 | 0.074 | |
| protein modification process | GO:0036211 | 438 | 0.068 | |
| glycoprotein biosynthetic process | GO:0009101 | 41 | 0.052 | |
| single organism biosynthetic process | GO:0044711 | 206 | 0.049 | |
| carbohydrate derivative metabolic process | GO:1901135 | 217 | 0.044 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.040 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 85 | 0.039 | |
| regionalization | GO:0003002 | 416 | 0.039 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.039 | |
| organic acid metabolic process | GO:0006082 | 103 | 0.038 | |
| catabolic process | GO:0009056 | 409 | 0.038 | |
| regulation of intracellular signal transduction | GO:1902531 | 236 | 0.036 | |
| organic substance transport | GO:0071702 | 257 | 0.036 | |
| establishment of localization in cell | GO:0051649 | 402 | 0.035 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.035 | |
| positive regulation of programmed cell death | GO:0043068 | 62 | 0.033 | |
| programmed cell death | GO:0012501 | 257 | 0.031 | |
| carbohydrate metabolic process | GO:0005975 | 82 | 0.031 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.027 | |
| body morphogenesis | GO:0010171 | 2 | 0.027 | |
| cell death | GO:0008219 | 279 | 0.026 | |
| protein localization | GO:0008104 | 284 | 0.025 | |
| gland development | GO:0048732 | 191 | 0.025 | |
| intracellular signal transduction | GO:0035556 | 300 | 0.024 | |
| single organism carbohydrate metabolic process | GO:0044723 | 72 | 0.024 | |
| epithelial cell differentiation | GO:0030855 | 322 | 0.023 | |
| phagocytosis | GO:0006909 | 215 | 0.023 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 3 | 0.023 | |
| cellular amino acid metabolic process | GO:0006520 | 61 | 0.023 | |
| response to organic substance | GO:0010033 | 284 | 0.022 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.022 | |
| death | GO:0016265 | 284 | 0.022 | |
| glycoprotein metabolic process | GO:0009100 | 41 | 0.022 | |
| cellular catabolic process | GO:0044248 | 372 | 0.022 | |
| peptidyl amino acid modification | GO:0018193 | 105 | 0.022 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.022 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.021 | |
| homeostatic process | GO:0042592 | 199 | 0.021 | |
| regulation of mitotic cell cycle | GO:0007346 | 190 | 0.021 | |
| phosphorylation | GO:0016310 | 294 | 0.021 | |
| male gamete generation | GO:0048232 | 201 | 0.020 | |
| regulation of cellular amine metabolic process | GO:0033238 | 3 | 0.020 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.020 | |
| cellular ketone metabolic process | GO:0042180 | 24 | 0.020 | |
| negative regulation of cell communication | GO:0010648 | 223 | 0.020 | |
| regulation of anatomical structure size | GO:0090066 | 163 | 0.019 | |
| carboxylic acid metabolic process | GO:0019752 | 92 | 0.019 | |
| cellular macromolecular complex assembly | GO:0034622 | 153 | 0.019 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.018 | |
| spermatogenesis | GO:0007283 | 200 | 0.018 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.018 | |
| endocytosis | GO:0006897 | 310 | 0.018 | |
| dephosphorylation | GO:0016311 | 51 | 0.018 | |
| establishment of protein localization | GO:0045184 | 163 | 0.018 | |
| intracellular transport | GO:0046907 | 228 | 0.018 | |
| imaginal disc derived appendage development | GO:0048737 | 399 | 0.017 | |
| organophosphate metabolic process | GO:0019637 | 195 | 0.017 | |
| single organism intracellular transport | GO:1902582 | 207 | 0.017 | |
| cell growth | GO:0016049 | 108 | 0.016 | |
| actin cytoskeleton organization | GO:0030036 | 206 | 0.016 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.016 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.016 | |
| camera type eye development | GO:0043010 | 4 | 0.016 | |
| cellular lipid metabolic process | GO:0044255 | 83 | 0.016 | |
| dorsal ventral pattern formation | GO:0009953 | 133 | 0.016 | |
| cytoplasmic transport | GO:0016482 | 130 | 0.016 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.016 | |
| cellular response to chemical stimulus | GO:0070887 | 199 | 0.015 | |
| regulation of phosphate metabolic process | GO:0019220 | 210 | 0.015 | |
| negative regulation of gene expression | GO:0010629 | 387 | 0.015 | |
| response to oxygen containing compound | GO:1901700 | 200 | 0.015 | |
| negative regulation of signal transduction | GO:0009968 | 206 | 0.015 | |
| embryonic morphogenesis | GO:0048598 | 206 | 0.015 | |
| golgi organization | GO:0007030 | 66 | 0.015 | |
| chromatin organization | GO:0006325 | 207 | 0.015 | |
| regulation of phosphorus metabolic process | GO:0051174 | 210 | 0.015 | |
| positive regulation of signaling | GO:0023056 | 243 | 0.015 | |
| lipid metabolic process | GO:0006629 | 121 | 0.015 | |
| growth | GO:0040007 | 359 | 0.015 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 0 | 0.014 | |
| regulation of cell death | GO:0010941 | 173 | 0.014 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.014 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.014 | |
| larval development | GO:0002164 | 104 | 0.014 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 106 | 0.014 | |
| actin filament based process | GO:0030029 | 220 | 0.014 | |
| kidney development | GO:0001822 | 3 | 0.014 | |
| cell cell signaling involved in cell fate commitment | GO:0045168 | 210 | 0.014 | |
| regulation of cellular component size | GO:0032535 | 98 | 0.013 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.013 | |
| cell cycle phase transition | GO:0044770 | 140 | 0.013 | |
| nitrogen compound transport | GO:0071705 | 85 | 0.013 | |
| spermatid development | GO:0007286 | 98 | 0.013 | |
| regulation of apoptotic process | GO:0042981 | 130 | 0.013 | |
| mitotic cell cycle phase transition | GO:0044772 | 138 | 0.013 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 117 | 0.013 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 174 | 0.013 | |
| proteolysis | GO:0006508 | 192 | 0.013 | |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.013 | |
| protein transport | GO:0015031 | 155 | 0.013 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.013 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.013 | |
| endomembrane system organization | GO:0010256 | 119 | 0.013 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.013 | |
| macromolecule glycosylation | GO:0043413 | 32 | 0.013 | |
| ion transmembrane transport | GO:0034220 | 122 | 0.012 | |
| regulation of programmed cell death | GO:0043067 | 152 | 0.012 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.012 | |
| purine ribonucleotide metabolic process | GO:0009150 | 145 | 0.012 | |
| embryonic pattern specification | GO:0009880 | 174 | 0.012 | |
| enzyme linked receptor protein signaling pathway | GO:0007167 | 179 | 0.012 | |
| xenobiotic catabolic process | GO:0042178 | 1 | 0.012 | |
| chaeta development | GO:0022416 | 97 | 0.012 | |
| response to organic cyclic compound | GO:0014070 | 89 | 0.012 | |
| positive regulation of transcription dna templated | GO:0045893 | 266 | 0.012 | |
| protein glycosylation | GO:0006486 | 32 | 0.012 | |
| response to temperature stimulus | GO:0009266 | 106 | 0.012 | |
| regulation of molecular function | GO:0065009 | 217 | 0.012 | |
| regulation of localization | GO:0032879 | 275 | 0.012 | |
| nucleocytoplasmic transport | GO:0006913 | 72 | 0.012 | |
| single organism catabolic process | GO:0044712 | 228 | 0.012 | |
| regulation of transport | GO:0051049 | 181 | 0.012 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 130 | 0.012 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.012 | |
| apoptotic process | GO:0006915 | 159 | 0.012 | |
| amine metabolic process | GO:0009308 | 12 | 0.011 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.011 | |
| cellular macromolecule localization | GO:0070727 | 220 | 0.011 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.011 | |
| sister chromatid segregation | GO:0000819 | 92 | 0.011 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.011 | |
| regulation of notch signaling pathway | GO:0008593 | 100 | 0.011 | |
| proteoglycan biosynthetic process | GO:0030166 | 10 | 0.011 | |
| ras protein signal transduction | GO:0007265 | 88 | 0.011 | |
| segmentation | GO:0035282 | 207 | 0.011 | |
| salivary gland development | GO:0007431 | 162 | 0.011 | |
| epithelial cell development | GO:0002064 | 274 | 0.011 | |
| protein localization to nucleus | GO:0034504 | 55 | 0.011 | |
| anterior posterior pattern specification | GO:0009952 | 136 | 0.011 | |
| positive regulation of proteolysis | GO:0045862 | 52 | 0.011 | |
| protein ubiquitination | GO:0016567 | 70 | 0.011 | |
| signal transduction by phosphorylation | GO:0023014 | 107 | 0.011 | |
| protein phosphorylation | GO:0006468 | 169 | 0.010 | |
| single organism behavior | GO:0044708 | 391 | 0.010 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 145 | 0.010 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.010 | |
| compound eye development | GO:0048749 | 307 | 0.010 | |
| organelle fission | GO:0048285 | 340 | 0.010 | |
| cellular protein localization | GO:0034613 | 160 | 0.010 | |
| imaginal disc pattern formation | GO:0007447 | 91 | 0.010 | |
| dendrite morphogenesis | GO:0048813 | 199 | 0.010 | |
| lateral inhibition | GO:0046331 | 206 | 0.010 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 204 | 0.010 | |
| appendage morphogenesis | GO:0035107 | 397 | 0.010 | |