| protein modification process | GO:0036211 | 438 | 0.101 | Yeast |
| small molecule metabolic process | GO:0044281 | 305 | 0.083 | |
| cellular protein modification process | GO:0006464 | 438 | 0.064 | Yeast |
| protein modification by small protein conjugation or removal | GO:0070647 | 106 | 0.063 | Yeast |
| phosphorylation | GO:0016310 | 294 | 0.053 | |
| intracellular signal transduction | GO:0035556 | 300 | 0.051 | |
| lateral inhibition | GO:0046331 | 206 | 0.048 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.047 | |
| imaginal disc derived wing morphogenesis | GO:0007476 | 337 | 0.047 | |
| establishment of localization in cell | GO:0051649 | 402 | 0.041 | |
| cell death | GO:0008219 | 279 | 0.040 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.039 | |
| cell cell signaling involved in cell fate commitment | GO:0045168 | 210 | 0.039 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.038 | |
| response to organic substance | GO:0010033 | 284 | 0.036 | |
| regulation of localization | GO:0032879 | 275 | 0.036 | |
| catabolic process | GO:0009056 | 409 | 0.035 | Yeast |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.035 | |
| response to external biotic stimulus | GO:0043207 | 293 | 0.033 | |
| appendage morphogenesis | GO:0035107 | 397 | 0.033 | |
| programmed cell death | GO:0012501 | 257 | 0.033 | |
| small molecule biosynthetic process | GO:0044283 | 37 | 0.033 | |
| negative regulation of gene expression | GO:0010629 | 387 | 0.032 | |
| cellular macromolecule localization | GO:0070727 | 220 | 0.031 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.031 | Yeast |
| wing disc morphogenesis | GO:0007472 | 344 | 0.030 | |
| protein modification by small protein conjugation | GO:0032446 | 79 | 0.030 | Yeast |
| death | GO:0016265 | 284 | 0.030 | |
| epithelial cell differentiation | GO:0030855 | 322 | 0.030 | |
| segmentation | GO:0035282 | 207 | 0.029 | |
| pole plasm mrna localization | GO:0019094 | 49 | 0.029 | |
| homeostatic process | GO:0042592 | 199 | 0.028 | |
| endocytosis | GO:0006897 | 310 | 0.028 | |
| imaginal disc derived appendage development | GO:0048737 | 399 | 0.028 | |
| regulation of phosphorus metabolic process | GO:0051174 | 210 | 0.027 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.027 | |
| synaptic transmission | GO:0007268 | 288 | 0.026 | |
| oxoacid metabolic process | GO:0043436 | 103 | 0.026 | |
| oocyte axis specification | GO:0007309 | 108 | 0.025 | |
| single organism intracellular transport | GO:1902582 | 207 | 0.025 | |
| regionalization | GO:0003002 | 416 | 0.025 | |
| apoptotic process | GO:0006915 | 159 | 0.024 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.024 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 165 | 0.024 | |
| post embryonic appendage morphogenesis | GO:0035120 | 385 | 0.023 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.023 | |
| cellular amide metabolic process | GO:0043603 | 80 | 0.023 | |
| intracellular transport | GO:0046907 | 228 | 0.023 | |
| regulation of phosphate metabolic process | GO:0019220 | 210 | 0.022 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.022 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.022 | |
| anterior posterior axis specification embryo | GO:0008595 | 103 | 0.021 | |
| appendage development | GO:0048736 | 401 | 0.021 | |
| regulation of cellular localization | GO:0060341 | 136 | 0.021 | |
| organic hydroxy compound metabolic process | GO:1901615 | 83 | 0.021 | |
| ras protein signal transduction | GO:0007265 | 88 | 0.021 | |
| single organism biosynthetic process | GO:0044711 | 206 | 0.021 | |
| embryonic axis specification | GO:0000578 | 107 | 0.021 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.021 | Yeast |
| positive regulation of molecular function | GO:0044093 | 136 | 0.021 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.021 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.021 | |
| nucleobase containing compound catabolic process | GO:0034655 | 165 | 0.020 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.020 | |
| regulation of molecular function | GO:0065009 | 217 | 0.019 | |
| tripartite regional subdivision | GO:0007351 | 103 | 0.019 | |
| dna metabolic process | GO:0006259 | 227 | 0.019 | |
| positive regulation of signaling | GO:0023056 | 243 | 0.019 | |
| regulation of phosphorylation | GO:0042325 | 147 | 0.019 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.018 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.018 | |
| protein complex biogenesis | GO:0070271 | 201 | 0.018 | |
| regulation of transport | GO:0051049 | 181 | 0.018 | |
| regulation of cellular component biogenesis | GO:0044087 | 201 | 0.018 | |
| endomembrane system organization | GO:0010256 | 119 | 0.018 | |
| lipid biosynthetic process | GO:0008610 | 46 | 0.018 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 267 | 0.018 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.017 | |
| regulation of programmed cell death | GO:0043067 | 152 | 0.017 | |
| imaginal disc derived appendage morphogenesis | GO:0035114 | 395 | 0.017 | |
| heterocycle catabolic process | GO:0046700 | 166 | 0.017 | |
| regulation of immune system process | GO:0002682 | 176 | 0.017 | |
| establishment of protein localization | GO:0045184 | 163 | 0.017 | |
| regulation of multi organism process | GO:0043900 | 131 | 0.017 | |
| aromatic compound catabolic process | GO:0019439 | 166 | 0.017 | |
| cell proliferation | GO:0008283 | 299 | 0.017 | |
| organelle assembly | GO:0070925 | 198 | 0.016 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 266 | 0.016 | |
| negative regulation of biosynthetic process | GO:0009890 | 277 | 0.016 | |
| positive regulation of transcription dna templated | GO:0045893 | 266 | 0.016 | |
| centrosome organization | GO:0051297 | 163 | 0.016 | |
| immune system process | GO:0002376 | 347 | 0.016 | |
| positive regulation of rna metabolic process | GO:0051254 | 271 | 0.016 | |
| positive regulation of signal transduction | GO:0009967 | 223 | 0.016 | |
| protein ubiquitination | GO:0016567 | 70 | 0.016 | Yeast |
| organonitrogen compound catabolic process | GO:1901565 | 128 | 0.016 | |
| lipid metabolic process | GO:0006629 | 121 | 0.016 | |
| response to lipopolysaccharide | GO:0032496 | 4 | 0.016 | |
| membrane organization | GO:0061024 | 112 | 0.016 | |
| organelle fission | GO:0048285 | 340 | 0.015 | |
| protein catabolic process | GO:0030163 | 101 | 0.015 | Yeast |
| cell fate determination | GO:0001709 | 91 | 0.015 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 265 | 0.015 | |
| regulation of synapse assembly | GO:0051963 | 94 | 0.015 | |
| oocyte construction | GO:0007308 | 112 | 0.015 | |
| nucleoside catabolic process | GO:0009164 | 112 | 0.015 | |
| axis specification | GO:0009798 | 167 | 0.015 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 139 | 0.015 | |
| connective tissue development | GO:0061448 | 3 | 0.015 | |
| response to radiation | GO:0009314 | 155 | 0.015 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.015 | |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.014 | Yeast |
| cell migration | GO:0016477 | 238 | 0.014 | |
| regulation of multicellular organismal development | GO:2000026 | 414 | 0.014 | |
| cellular catabolic process | GO:0044248 | 372 | 0.014 | Yeast |
| organic acid metabolic process | GO:0006082 | 103 | 0.014 | |
| embryonic pattern specification | GO:0009880 | 174 | 0.014 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.014 | |
| protein localization | GO:0008104 | 284 | 0.014 | |
| intracellular mrna localization involved in anterior posterior axis specification | GO:0060811 | 53 | 0.014 | |
| protein phosphorylation | GO:0006468 | 169 | 0.014 | |
| small gtpase mediated signal transduction | GO:0007264 | 88 | 0.014 | |
| cellular lipid metabolic process | GO:0044255 | 83 | 0.014 | |
| intracellular mrna localization involved in pattern specification process | GO:0060810 | 56 | 0.013 | |
| photoreceptor cell development | GO:0042461 | 96 | 0.013 | |
| single organism membrane organization | GO:0044802 | 93 | 0.013 | |
| cellularization | GO:0007349 | 90 | 0.013 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.013 | |
| cell motility | GO:0048870 | 251 | 0.013 | |
| organophosphate metabolic process | GO:0019637 | 195 | 0.013 | |
| cell aging | GO:0007569 | 2 | 0.013 | |
| regulation of cell death | GO:0010941 | 173 | 0.013 | |
| medium chain fatty acid metabolic process | GO:0051791 | 1 | 0.013 | |
| negative regulation of cell communication | GO:0010648 | 223 | 0.013 | |
| anterior posterior pattern specification | GO:0009952 | 136 | 0.013 | |
| mapk cascade | GO:0000165 | 107 | 0.012 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.012 | |
| regulation of apoptotic process | GO:0042981 | 130 | 0.012 | |
| endosomal transport | GO:0016197 | 44 | 0.012 | |
| telomere maintenance | GO:0000723 | 21 | 0.012 | |
| compound eye morphogenesis | GO:0001745 | 249 | 0.012 | |
| developmental maturation | GO:0021700 | 172 | 0.012 | |
| extrinsic apoptotic signaling pathway | GO:0097191 | 1 | 0.012 | |
| regulation of i kappab kinase nf kappab signaling | GO:0043122 | 2 | 0.012 | |
| phagocytosis | GO:0006909 | 215 | 0.012 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 117 | 0.012 | |
| positive regulation of developmental process | GO:0051094 | 143 | 0.011 | |
| response to biotic stimulus | GO:0009607 | 294 | 0.011 | |
| behavioral response to ethanol | GO:0048149 | 49 | 0.011 | |
| body morphogenesis | GO:0010171 | 2 | 0.011 | |
| blastoderm segmentation | GO:0007350 | 159 | 0.011 | |
| photoreceptor cell differentiation | GO:0046530 | 170 | 0.011 | |
| ribonucleoside monophosphate metabolic process | GO:0009161 | 51 | 0.011 | |
| protein complex assembly | GO:0006461 | 200 | 0.011 | |
| response to temperature stimulus | GO:0009266 | 106 | 0.011 | |
| regulation of cellular amine metabolic process | GO:0033238 | 3 | 0.011 | |
| cellular response to radiation | GO:0071478 | 52 | 0.011 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.011 | |
| dendrite development | GO:0016358 | 204 | 0.011 | |
| response to light stimulus | GO:0009416 | 124 | 0.011 | |
| amine metabolic process | GO:0009308 | 12 | 0.011 | |
| maternal determination of anterior posterior axis embryo | GO:0008358 | 74 | 0.011 | |
| tissue death | GO:0016271 | 102 | 0.011 | |
| adult behavior | GO:0030534 | 137 | 0.011 | |
| cytoplasm organization | GO:0007028 | 64 | 0.011 | |
| telomere organization | GO:0032200 | 21 | 0.011 | |
| defense response to bacterium | GO:0042742 | 178 | 0.011 | |
| proteolysis | GO:0006508 | 192 | 0.011 | Yeast |
| regulation of catabolic process | GO:0009894 | 170 | 0.011 | |
| cellular amine metabolic process | GO:0044106 | 12 | 0.011 | |
| protein modification by small protein removal | GO:0070646 | 28 | 0.011 | |
| ribonucleotide metabolic process | GO:0009259 | 145 | 0.011 | |
| regulation of response to stress | GO:0080134 | 200 | 0.010 | |
| regulation of small gtpase mediated signal transduction | GO:0051056 | 93 | 0.010 | |
| ubiquitin homeostasis | GO:0010992 | 1 | 0.010 | |
| carboxylic acid biosynthetic process | GO:0046394 | 15 | 0.010 | |
| carboxylic acid metabolic process | GO:0019752 | 92 | 0.010 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 139 | 0.010 | |
| dendrite morphogenesis | GO:0048813 | 199 | 0.010 | |
| regulation of protein catabolic process | GO:0042176 | 55 | 0.010 | |
| negative regulation of programmed cell death | GO:0043069 | 72 | 0.010 | |
| cell maturation | GO:0048469 | 144 | 0.010 | |
| positive regulation of catabolic process | GO:0009896 | 105 | 0.010 | |
| neuromuscular junction development | GO:0007528 | 149 | 0.010 | |