| protein modification by small protein removal | GO:0070646 | 28 | 0.170 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.139 | |
| protein deubiquitination | GO:0016579 | 17 | 0.117 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 152 | 0.103 | |
| positive regulation of signal transduction | GO:0009967 | 223 | 0.095 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.093 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.089 | |
| single organism biosynthetic process | GO:0044711 | 206 | 0.086 | |
| catabolic process | GO:0009056 | 409 | 0.083 | |
| cell proliferation | GO:0008283 | 299 | 0.073 | |
| chromosome organization | GO:0051276 | 360 | 0.069 | |
| protein modification process | GO:0036211 | 438 | 0.062 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 106 | 0.062 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.061 | |
| oxoacid metabolic process | GO:0043436 | 103 | 0.054 | |
| carboxylic acid metabolic process | GO:0019752 | 92 | 0.054 | |
| localization of cell | GO:0051674 | 257 | 0.054 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.052 | |
| cellular protein modification process | GO:0006464 | 438 | 0.052 | |
| body morphogenesis | GO:0010171 | 2 | 0.049 | |
| cell cell signaling involved in cell fate commitment | GO:0045168 | 210 | 0.048 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.042 | |
| single organism catabolic process | GO:0044712 | 228 | 0.042 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.042 | |
| cellular catabolic process | GO:0044248 | 372 | 0.041 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.038 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.038 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.036 | |
| tissue morphogenesis | GO:0048729 | 297 | 0.036 | |
| phosphorylation | GO:0016310 | 294 | 0.035 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.034 | |
| chromatin modification | GO:0016568 | 147 | 0.032 | |
| cellular response to dna damage stimulus | GO:0006974 | 223 | 0.032 | |
| organic acid metabolic process | GO:0006082 | 103 | 0.030 | |
| regulation of cell proliferation | GO:0042127 | 163 | 0.029 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.028 | |
| regulation of cellular amine metabolic process | GO:0033238 | 3 | 0.027 | |
| neurological system process | GO:0050877 | 358 | 0.027 | |
| proteolysis | GO:0006508 | 192 | 0.027 | |
| cell motility | GO:0048870 | 251 | 0.027 | |
| pigment metabolic process | GO:0042440 | 84 | 0.026 | |
| cellular amine metabolic process | GO:0044106 | 12 | 0.025 | |
| cell migration | GO:0016477 | 238 | 0.025 | |
| regulation of protein modification process | GO:0031399 | 112 | 0.025 | |
| positive regulation of proteolysis | GO:0045862 | 52 | 0.025 | |
| protein phosphorylation | GO:0006468 | 169 | 0.024 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.024 | |
| cellular amino acid metabolic process | GO:0006520 | 61 | 0.024 | |
| histone deubiquitination | GO:0016578 | 8 | 0.024 | |
| histone h3 acetylation | GO:0043966 | 11 | 0.023 | |
| forebrain development | GO:0030900 | 2 | 0.023 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.023 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.023 | |
| positive regulation of intracellular signal transduction | GO:1902533 | 116 | 0.023 | |
| organophosphate catabolic process | GO:0046434 | 112 | 0.023 | |
| cation transport | GO:0006812 | 110 | 0.023 | |
| epithelial cell development | GO:0002064 | 274 | 0.023 | |
| intracellular signal transduction | GO:0035556 | 300 | 0.022 | |
| neuron death | GO:0070997 | 27 | 0.021 | |
| negative regulation of response to stimulus | GO:0048585 | 258 | 0.021 | |
| regulation of molecular function | GO:0065009 | 217 | 0.020 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.020 | |
| regulation of anatomical structure size | GO:0090066 | 163 | 0.020 | |
| regulation of gene expression epigenetic | GO:0040029 | 128 | 0.020 | |
| aromatic compound catabolic process | GO:0019439 | 166 | 0.020 | |
| sulfur compound metabolic process | GO:0006790 | 59 | 0.020 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 266 | 0.019 | |
| positive regulation of apoptotic signaling pathway | GO:2001235 | 4 | 0.019 | |
| amine metabolic process | GO:0009308 | 12 | 0.019 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 0 | 0.019 | |
| cell death | GO:0008219 | 279 | 0.019 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.019 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 3 | 0.019 | |
| lateral inhibition | GO:0046331 | 206 | 0.019 | |
| organic substance transport | GO:0071702 | 257 | 0.018 | |
| phagocytosis | GO:0006909 | 215 | 0.018 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.018 | |
| organophosphate metabolic process | GO:0019637 | 195 | 0.018 | |
| positive regulation of transcription dna templated | GO:0045893 | 266 | 0.018 | |
| jak stat cascade | GO:0007259 | 49 | 0.017 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.017 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.016 | |
| death | GO:0016265 | 284 | 0.016 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 130 | 0.016 | |
| positive regulation of protein metabolic process | GO:0051247 | 128 | 0.016 | |
| organic cyclic compound catabolic process | GO:1901361 | 168 | 0.016 | |
| ribose phosphate metabolic process | GO:0019693 | 145 | 0.015 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.015 | |
| negative regulation of gene expression | GO:0010629 | 387 | 0.015 | |
| spindle organization | GO:0007051 | 253 | 0.015 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.015 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.015 | |
| cellular ketone metabolic process | GO:0042180 | 24 | 0.015 | |
| axonogenesis | GO:0007409 | 290 | 0.015 | |
| embryonic axis specification | GO:0000578 | 107 | 0.015 | |
| regulation of response to stress | GO:0080134 | 200 | 0.015 | |
| purine ribonucleotide catabolic process | GO:0009154 | 109 | 0.014 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 165 | 0.014 | |
| covalent chromatin modification | GO:0016569 | 106 | 0.014 | |
| positive regulation of signaling | GO:0023056 | 243 | 0.014 | |
| regulation of phosphorus metabolic process | GO:0051174 | 210 | 0.014 | |
| anatomical structure homeostasis | GO:0060249 | 97 | 0.014 | |
| nucleoside phosphate catabolic process | GO:1901292 | 110 | 0.013 | |
| regulation of cell cycle process | GO:0010564 | 181 | 0.013 | |
| transmembrane receptor protein tyrosine kinase signaling pathway | GO:0007169 | 116 | 0.013 | |
| mrna metabolic process | GO:0016071 | 124 | 0.013 | |
| nucleoside phosphate metabolic process | GO:0006753 | 162 | 0.013 | |
| negative regulation of cell cycle process | GO:0010948 | 109 | 0.013 | |
| positive regulation of cell death | GO:0010942 | 69 | 0.013 | |
| negative regulation of signaling | GO:0023057 | 219 | 0.013 | |
| homeostatic process | GO:0042592 | 199 | 0.013 | |
| carbohydrate derivative catabolic process | GO:1901136 | 118 | 0.013 | |
| cell cycle phase transition | GO:0044770 | 140 | 0.013 | |
| response to organic substance | GO:0010033 | 284 | 0.013 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 119 | 0.013 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 265 | 0.012 | |
| chromatin organization | GO:0006325 | 207 | 0.012 | |
| positive regulation of cellular amino acid metabolic process | GO:0045764 | 0 | 0.012 | |
| dna repair | GO:0006281 | 54 | 0.012 | |
| cellular component assembly involved in morphogenesis | GO:0010927 | 151 | 0.012 | |
| ion transport | GO:0006811 | 145 | 0.012 | |
| internal protein amino acid acetylation | GO:0006475 | 38 | 0.012 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 261 | 0.012 | |
| morphogenesis of an epithelium | GO:0002009 | 276 | 0.011 | |
| lipid metabolic process | GO:0006629 | 121 | 0.011 | |
| negative regulation of cell communication | GO:0010648 | 223 | 0.011 | |
| reactive oxygen species metabolic process | GO:0072593 | 22 | 0.011 | |
| cell projection assembly | GO:0030031 | 94 | 0.011 | |
| imaginal disc derived appendage development | GO:0048737 | 399 | 0.011 | |
| apoptotic signaling pathway | GO:0097190 | 27 | 0.011 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 118 | 0.011 | |
| cytoplasmic transport | GO:0016482 | 130 | 0.011 | |
| purine ribonucleotide metabolic process | GO:0009150 | 145 | 0.011 | |
| response to growth factor | GO:0070848 | 31 | 0.011 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 0 | 0.011 | |
| nucleobase containing compound catabolic process | GO:0034655 | 165 | 0.011 | |
| segmentation | GO:0035282 | 207 | 0.011 | |
| nuclear division | GO:0000280 | 332 | 0.011 | |
| establishment of protein localization | GO:0045184 | 163 | 0.010 | |
| regulation of multicellular organismal development | GO:2000026 | 414 | 0.010 | |
| regulation of organelle organization | GO:0033043 | 196 | 0.010 | |
| axis specification | GO:0009798 | 167 | 0.010 | |
| cytokinesis | GO:0000910 | 90 | 0.010 | |
| pigmentation | GO:0043473 | 75 | 0.010 | |
| positive regulation of phosphorylation | GO:0042327 | 87 | 0.010 | |
| regulation of chromatin silencing | GO:0031935 | 36 | 0.010 | |
| positive regulation of cellular component biogenesis | GO:0044089 | 80 | 0.010 | |
| glial cell migration | GO:0008347 | 31 | 0.010 | |
| programmed cell death | GO:0012501 | 257 | 0.010 | |