| negative regulation of gene expression | GO:0010629 | 387 | 0.050 | |
| anatomical structure homeostasis | GO:0060249 | 97 | 0.048 | |
| chromosome organization | GO:0051276 | 360 | 0.046 | |
| appendage morphogenesis | GO:0035107 | 397 | 0.037 | |
| catabolic process | GO:0009056 | 409 | 0.035 | |
| appendage development | GO:0048736 | 401 | 0.032 | |
| nuclear division | GO:0000280 | 332 | 0.032 | |
| dna metabolic process | GO:0006259 | 227 | 0.032 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 265 | 0.031 | |
| telomere maintenance | GO:0000723 | 21 | 0.030 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.029 | |
| gene silencing | GO:0016458 | 138 | 0.029 | |
| histone mrna metabolic process | GO:0008334 | 8 | 0.028 | |
| positive regulation of signal transduction | GO:0009967 | 223 | 0.028 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 261 | 0.026 | |
| ras protein signal transduction | GO:0007265 | 88 | 0.025 | |
| regulation of gene expression epigenetic | GO:0040029 | 128 | 0.024 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 240 | 0.024 | |
| regionalization | GO:0003002 | 416 | 0.024 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.024 | |
| heterochromatin organization | GO:0070828 | 25 | 0.023 | |
| oxoacid metabolic process | GO:0043436 | 103 | 0.023 | |
| multi organism behavior | GO:0051705 | 175 | 0.023 | |
| dna conformation change | GO:0071103 | 105 | 0.023 | |
| mitotic sister chromatid segregation | GO:0000070 | 87 | 0.022 | |
| embryonic development via the syncytial blastoderm | GO:0001700 | 148 | 0.022 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.021 | |
| developmental growth | GO:0048589 | 280 | 0.020 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.020 | |
| positive regulation of signaling | GO:0023056 | 243 | 0.020 | |
| regulation of organelle organization | GO:0033043 | 196 | 0.020 | |
| wing disc morphogenesis | GO:0007472 | 344 | 0.020 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.020 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.019 | |
| organelle fission | GO:0048285 | 340 | 0.019 | |
| regulation of cellular component biogenesis | GO:0044087 | 201 | 0.019 | |
| homeostatic process | GO:0042592 | 199 | 0.019 | |
| mitotic nuclear division | GO:0007067 | 213 | 0.019 | |
| carboxylic acid metabolic process | GO:0019752 | 92 | 0.019 | |
| stem cell division | GO:0017145 | 69 | 0.019 | |
| cilium morphogenesis | GO:0060271 | 39 | 0.018 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.018 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 165 | 0.018 | |
| gene silencing by rna | GO:0031047 | 57 | 0.018 | |
| epithelial cell differentiation | GO:0030855 | 322 | 0.018 | |
| salivary gland development | GO:0007431 | 162 | 0.018 | |
| positive regulation of cellular amino acid metabolic process | GO:0045764 | 0 | 0.017 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.017 | |
| negative regulation of rna metabolic process | GO:0051253 | 251 | 0.017 | |
| cell proliferation | GO:0008283 | 299 | 0.017 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.017 | |
| phagocytosis | GO:0006909 | 215 | 0.017 | |
| aromatic compound catabolic process | GO:0019439 | 166 | 0.016 | |
| embryonic morphogenesis | GO:0048598 | 206 | 0.016 | |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.016 | |
| cell projection assembly | GO:0030031 | 94 | 0.016 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.016 | |
| cellular amino acid metabolic process | GO:0006520 | 61 | 0.016 | |
| tissue morphogenesis | GO:0048729 | 297 | 0.016 | |
| cellular macromolecular complex assembly | GO:0034622 | 153 | 0.016 | |
| neurological system process | GO:0050877 | 358 | 0.016 | |
| heterocycle catabolic process | GO:0046700 | 166 | 0.016 | |
| exocrine system development | GO:0035272 | 162 | 0.015 | |
| compound eye photoreceptor cell differentiation | GO:0001751 | 140 | 0.015 | |
| regulation of multicellular organismal development | GO:2000026 | 414 | 0.015 | |
| regulation of cellular amine metabolic process | GO:0033238 | 3 | 0.015 | |
| protein complex biogenesis | GO:0070271 | 201 | 0.015 | |
| centrosome cycle | GO:0007098 | 137 | 0.015 | |
| cellular catabolic process | GO:0044248 | 372 | 0.015 | |
| regulation of cell differentiation | GO:0045595 | 302 | 0.015 | |
| central nervous system development | GO:0007417 | 201 | 0.015 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.015 | |
| negative regulation of developmental process | GO:0051093 | 201 | 0.015 | |
| small gtpase mediated signal transduction | GO:0007264 | 88 | 0.015 | |
| chromatin organization | GO:0006325 | 207 | 0.015 | |
| cellular component assembly involved in morphogenesis | GO:0010927 | 151 | 0.015 | |
| protein dna complex subunit organization | GO:0071824 | 86 | 0.014 | |
| chromosome segregation | GO:0007059 | 157 | 0.014 | |
| negative regulation of transcription dna templated | GO:0045892 | 237 | 0.014 | |
| triglyceride catabolic process | GO:0019433 | 3 | 0.014 | |
| chromatin remodeling | GO:0006338 | 72 | 0.014 | |
| locomotory behavior | GO:0007626 | 176 | 0.014 | |
| chromatin assembly | GO:0031497 | 48 | 0.014 | |
| organophosphate metabolic process | GO:0019637 | 195 | 0.014 | |
| cell division | GO:0051301 | 248 | 0.014 | |
| synaptic transmission | GO:0007268 | 288 | 0.014 | |
| phosphorylation | GO:0016310 | 294 | 0.014 | |
| regulation of cell cycle process | GO:0010564 | 181 | 0.014 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.014 | |
| rna interference | GO:0016246 | 27 | 0.014 | |
| establishment or maintenance of cell polarity | GO:0007163 | 167 | 0.014 | |
| rna processing | GO:0006396 | 147 | 0.014 | |
| body morphogenesis | GO:0010171 | 2 | 0.014 | |
| organelle assembly | GO:0070925 | 198 | 0.014 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 240 | 0.013 | |
| positive regulation of lipid metabolic process | GO:0045834 | 4 | 0.013 | |
| imaginal disc derived wing morphogenesis | GO:0007476 | 337 | 0.013 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.013 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.013 | |
| stem cell proliferation | GO:0072089 | 88 | 0.013 | |
| salivary gland morphogenesis | GO:0007435 | 145 | 0.013 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.013 | |
| cellular metal ion homeostasis | GO:0006875 | 31 | 0.013 | |
| posttranscriptional gene silencing | GO:0016441 | 46 | 0.013 | |
| spinal cord development | GO:0021510 | 1 | 0.013 | |
| organic cyclic compound catabolic process | GO:1901361 | 168 | 0.013 | |
| cellular response to dna damage stimulus | GO:0006974 | 223 | 0.012 | |
| determination of adult lifespan | GO:0008340 | 137 | 0.012 | |
| axis specification | GO:0009798 | 167 | 0.012 | |
| imaginal disc derived appendage development | GO:0048737 | 399 | 0.012 | |
| organic acid metabolic process | GO:0006082 | 103 | 0.012 | |
| cilium organization | GO:0044782 | 41 | 0.012 | |
| negative regulation of nervous system development | GO:0051961 | 92 | 0.012 | |
| regulation of dna metabolic process | GO:0051052 | 34 | 0.012 | |
| regulation of epidermal growth factor receptor signaling pathway | GO:0042058 | 42 | 0.012 | |
| forebrain development | GO:0030900 | 2 | 0.012 | |
| posttranscriptional gene silencing by rna | GO:0035194 | 45 | 0.012 | |
| cellular amine metabolic process | GO:0044106 | 12 | 0.012 | |
| cellularization | GO:0007349 | 90 | 0.012 | |
| response to light stimulus | GO:0009416 | 124 | 0.012 | |
| stem cell development | GO:0048864 | 79 | 0.012 | |
| spindle organization | GO:0007051 | 253 | 0.012 | |
| negative regulation of erk1 and erk2 cascade | GO:0070373 | 3 | 0.012 | |
| regulation of phosphorus metabolic process | GO:0051174 | 210 | 0.012 | |
| response to extracellular stimulus | GO:0009991 | 116 | 0.012 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.012 | |
| endocytosis | GO:0006897 | 310 | 0.012 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 0 | 0.012 | |
| multi multicellular organism process | GO:0044706 | 123 | 0.012 | |
| cellular protein modification process | GO:0006464 | 438 | 0.011 | |
| taxis | GO:0042330 | 304 | 0.011 | |
| regulation of localization | GO:0032879 | 275 | 0.011 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 0 | 0.011 | |
| cellular response to biotic stimulus | GO:0071216 | 4 | 0.011 | |
| single organism biosynthetic process | GO:0044711 | 206 | 0.011 | |
| protein modification process | GO:0036211 | 438 | 0.011 | |
| regulation of small gtpase mediated signal transduction | GO:0051056 | 93 | 0.011 | |
| learning | GO:0007612 | 75 | 0.011 | |
| compound eye morphogenesis | GO:0001745 | 249 | 0.011 | |
| imaginal disc derived appendage morphogenesis | GO:0035114 | 395 | 0.011 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 267 | 0.011 | |
| chromosome localization | GO:0050000 | 20 | 0.011 | |
| negative regulation of biosynthetic process | GO:0009890 | 277 | 0.011 | |
| negative regulation of cell differentiation | GO:0045596 | 143 | 0.011 | |
| nucleobase containing compound catabolic process | GO:0034655 | 165 | 0.011 | |
| regulation of neurogenesis | GO:0050767 | 158 | 0.011 | |
| regulation of immune system process | GO:0002682 | 176 | 0.011 | |
| regulation of phosphate metabolic process | GO:0019220 | 210 | 0.011 | |
| telencephalon development | GO:0021537 | 2 | 0.011 | |
| apoptotic process | GO:0006915 | 159 | 0.011 | |
| positive regulation of cellular component biogenesis | GO:0044089 | 80 | 0.010 | |
| regulation of nervous system development | GO:0051960 | 248 | 0.010 | |
| eye photoreceptor cell differentiation | GO:0001754 | 145 | 0.010 | |
| lipid metabolic process | GO:0006629 | 121 | 0.010 | |
| gland morphogenesis | GO:0022612 | 145 | 0.010 | |
| regulation of developmental growth | GO:0048638 | 174 | 0.010 | |
| pole cell formation | GO:0007279 | 19 | 0.010 | |
| regulation of ras protein signal transduction | GO:0046578 | 93 | 0.010 | |