| cellular protein modification process | GO:0006464 | 438 | 0.201 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 106 | 0.154 | |
| male mating behavior | GO:0060179 | 70 | 0.107 | |
| mitotic nuclear division | GO:0007067 | 213 | 0.069 | |
| compound eye morphogenesis | GO:0001745 | 249 | 0.065 | |
| protein modification process | GO:0036211 | 438 | 0.064 | |
| protein modification by small protein removal | GO:0070646 | 28 | 0.059 | |
| axon guidance | GO:0007411 | 233 | 0.058 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.055 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.053 | |
| peripheral nervous system development | GO:0007422 | 52 | 0.051 | |
| nuclear division | GO:0000280 | 332 | 0.048 | |
| compound eye development | GO:0048749 | 307 | 0.048 | |
| dna damage checkpoint | GO:0000077 | 78 | 0.047 | |
| cellular component disassembly | GO:0022411 | 46 | 0.045 | |
| single organism cellular localization | GO:1902580 | 180 | 0.041 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 266 | 0.041 | |
| protein k48 linked ubiquitination | GO:0070936 | 3 | 0.041 | |
| protein complex biogenesis | GO:0070271 | 201 | 0.041 | Rat |
| positive regulation of gene expression | GO:0010628 | 290 | 0.040 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.037 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 145 | 0.036 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.035 | |
| male meiosis cytokinesis | GO:0007112 | 26 | 0.035 | |
| regulation of transport | GO:0051049 | 181 | 0.035 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 85 | 0.035 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.034 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.034 | |
| male gamete generation | GO:0048232 | 201 | 0.034 | |
| regulation of hematopoietic progenitor cell differentiation | GO:1901532 | 1 | 0.033 | |
| developmental maturation | GO:0021700 | 172 | 0.033 | |
| cellular protein catabolic process | GO:0044257 | 83 | 0.033 | |
| reproductive behavior | GO:0019098 | 122 | 0.033 | |
| centrosome duplication | GO:0051298 | 121 | 0.030 | |
| g protein coupled receptor signaling pathway | GO:0007186 | 136 | 0.030 | |
| negative regulation of mitotic cell cycle phase transition | GO:1901991 | 103 | 0.029 | |
| negative regulation of mitotic cell cycle | GO:0045930 | 109 | 0.026 | |
| protein catabolic process | GO:0030163 | 101 | 0.026 | |
| positive regulation of protein metabolic process | GO:0051247 | 128 | 0.025 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.025 | Rat |
| positive regulation of cellular protein metabolic process | GO:0032270 | 118 | 0.025 | |
| positive regulation of transcription dna templated | GO:0045893 | 266 | 0.025 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.024 | Rat |
| multi multicellular organism process | GO:0044706 | 123 | 0.024 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.024 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 204 | 0.024 | |
| regulation of phosphorus metabolic process | GO:0051174 | 210 | 0.024 | |
| regulation of cellular component biogenesis | GO:0044087 | 201 | 0.023 | |
| small gtpase mediated signal transduction | GO:0007264 | 88 | 0.023 | |
| courtship behavior | GO:0007619 | 68 | 0.023 | |
| positive regulation of rna metabolic process | GO:0051254 | 271 | 0.023 | |
| regulation of localization | GO:0032879 | 275 | 0.022 | |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.022 | |
| synaptic transmission | GO:0007268 | 288 | 0.022 | |
| brain development | GO:0007420 | 120 | 0.022 | |
| gland development | GO:0048732 | 191 | 0.021 | |
| actin cytoskeleton organization | GO:0030036 | 206 | 0.021 | |
| central nervous system development | GO:0007417 | 201 | 0.021 | |
| positive regulation of cellular component organization | GO:0051130 | 156 | 0.021 | |
| g2 dna damage checkpoint | GO:0031572 | 69 | 0.021 | |
| translation | GO:0006412 | 69 | 0.020 | |
| endocytosis | GO:0006897 | 310 | 0.019 | |
| protein modification by small protein conjugation | GO:0032446 | 79 | 0.019 | |
| response to radiation | GO:0009314 | 155 | 0.019 | |
| eye development | GO:0001654 | 323 | 0.019 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.019 | |
| imaginal disc derived appendage morphogenesis | GO:0035114 | 395 | 0.019 | |
| positive regulation of catalytic activity | GO:0043085 | 118 | 0.019 | |
| sensory organ morphogenesis | GO:0090596 | 260 | 0.019 | |
| oxoacid metabolic process | GO:0043436 | 103 | 0.019 | |
| cell maturation | GO:0048469 | 144 | 0.018 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.018 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.018 | |
| regulation of multicellular organismal development | GO:2000026 | 414 | 0.018 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.018 | |
| death | GO:0016265 | 284 | 0.017 | |
| epithelial cell development | GO:0002064 | 274 | 0.017 | |
| response to organonitrogen compound | GO:0010243 | 75 | 0.017 | |
| embryonic ectodermal digestive tract development | GO:0048611 | 4 | 0.017 | |
| eye morphogenesis | GO:0048592 | 260 | 0.016 | |
| dendrite morphogenesis | GO:0048813 | 199 | 0.016 | |
| actin filament based process | GO:0030029 | 220 | 0.016 | |
| cellular protein localization | GO:0034613 | 160 | 0.016 | |
| protein complex assembly | GO:0006461 | 200 | 0.016 | Rat |
| regulation of cytoplasmic transport | GO:1903649 | 47 | 0.016 | |
| negative regulation of cell cycle phase transition | GO:1901988 | 103 | 0.016 | |
| mitotic dna damage checkpoint | GO:0044773 | 74 | 0.015 | |
| proteolysis | GO:0006508 | 192 | 0.015 | |
| cell cell signaling involved in cell fate commitment | GO:0045168 | 210 | 0.015 | |
| protein phosphorylation | GO:0006468 | 169 | 0.015 | |
| phagocytosis | GO:0006909 | 215 | 0.015 | |
| ras protein signal transduction | GO:0007265 | 88 | 0.015 | |
| columnar cuboidal epithelial cell differentiation | GO:0002065 | 256 | 0.015 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.015 | Rat |
| phosphorylation | GO:0016310 | 294 | 0.015 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.015 | |
| regulation of cell cycle phase transition | GO:1901987 | 130 | 0.015 | |
| nucleus organization | GO:0006997 | 45 | 0.015 | |
| multi organism behavior | GO:0051705 | 175 | 0.015 | |
| dendrite development | GO:0016358 | 204 | 0.015 | |
| mitotic cell cycle checkpoint | GO:0007093 | 88 | 0.015 | |
| lipid localization | GO:0010876 | 54 | 0.015 | |
| mitotic g2 dna damage checkpoint | GO:0007095 | 69 | 0.015 | |
| protein deubiquitination | GO:0016579 | 17 | 0.014 | |
| adult behavior | GO:0030534 | 137 | 0.014 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.014 | |
| organic acid metabolic process | GO:0006082 | 103 | 0.013 | |
| regulation of cell morphogenesis | GO:0022604 | 163 | 0.013 | |
| response to oxygen containing compound | GO:1901700 | 200 | 0.013 | |
| nephron tubule morphogenesis | GO:0072078 | 3 | 0.013 | |
| mating | GO:0007618 | 120 | 0.013 | |
| organic substance transport | GO:0071702 | 257 | 0.013 | |
| axonogenesis | GO:0007409 | 290 | 0.013 | |
| regulation of mitotic cell cycle | GO:0007346 | 190 | 0.013 | |
| histone modification | GO:0016570 | 106 | 0.013 | |
| post golgi vesicle mediated transport | GO:0006892 | 11 | 0.013 | |
| secretion | GO:0046903 | 109 | 0.013 | |
| gland morphogenesis | GO:0022612 | 145 | 0.012 | |
| positive regulation of molecular function | GO:0044093 | 136 | 0.012 | |
| regulation of molecular function | GO:0065009 | 217 | 0.012 | |
| photoreceptor cell differentiation | GO:0046530 | 170 | 0.012 | |
| carbohydrate metabolic process | GO:0005975 | 82 | 0.012 | |
| regulation of cell shape | GO:0008360 | 113 | 0.012 | |
| intracellular protein transport | GO:0006886 | 104 | 0.012 | |
| forebrain development | GO:0030900 | 2 | 0.012 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.012 | |
| regulation of nervous system development | GO:0051960 | 248 | 0.012 | |
| multi organism reproductive behavior | GO:0044705 | 121 | 0.012 | |
| mitotic cell cycle phase transition | GO:0044772 | 138 | 0.011 | |
| chromatin modification | GO:0016568 | 147 | 0.011 | |
| cellular catabolic process | GO:0044248 | 372 | 0.011 | |
| mitotic dna integrity checkpoint | GO:0044774 | 75 | 0.011 | |
| golgi to plasma membrane protein transport | GO:0043001 | 8 | 0.011 | |
| salivary gland development | GO:0007431 | 162 | 0.011 | |
| regulation of hemocyte proliferation | GO:0035206 | 37 | 0.011 | |
| histone deubiquitination | GO:0016578 | 8 | 0.011 | |
| growth | GO:0040007 | 359 | 0.011 | |
| salivary gland morphogenesis | GO:0007435 | 145 | 0.011 | |
| regulation of synaptic transmission | GO:0050804 | 69 | 0.011 | |
| developmental growth | GO:0048589 | 280 | 0.011 | |
| muscle structure development | GO:0061061 | 224 | 0.011 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 78 | 0.011 | |
| protein transport | GO:0015031 | 155 | 0.011 | |
| establishment of localization in cell | GO:0051649 | 402 | 0.011 | |
| protein ubiquitination | GO:0016567 | 70 | 0.011 | |
| g1 s transition of mitotic cell cycle | GO:0000082 | 31 | 0.010 | |
| cell cycle checkpoint | GO:0000075 | 95 | 0.010 | |
| single organism biosynthetic process | GO:0044711 | 206 | 0.010 | |
| ovarian follicle cell migration | GO:0007297 | 121 | 0.010 | |
| organic cyclic compound catabolic process | GO:1901361 | 168 | 0.010 | |
| establishment of protein localization | GO:0045184 | 163 | 0.010 | |
| membrane organization | GO:0061024 | 112 | 0.010 | |
| golgi to plasma membrane transport | GO:0006893 | 8 | 0.010 | |
| multicellular organismal reproductive behavior | GO:0033057 | 110 | 0.010 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.010 | |
