| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.787 | |
| dna metabolic process | GO:0006259 | 227 | 0.593 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 152 | 0.354 | Worm |
| pigmentation | GO:0043473 | 75 | 0.224 | |
| positive regulation of transcription dna templated | GO:0045893 | 266 | 0.223 | |
| rna splicing via transesterification reactions with bulged adenosine as nucleophile | GO:0000377 | 73 | 0.190 | Yeast |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.187 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.176 | |
| cellular macromolecular complex assembly | GO:0034622 | 153 | 0.172 | Yeast |
| regionalization | GO:0003002 | 416 | 0.161 | |
| chromosome organization | GO:0051276 | 360 | 0.153 | |
| protein acetylation | GO:0006473 | 39 | 0.136 | |
| mrna processing | GO:0006397 | 104 | 0.133 | Yeast |
| rna processing | GO:0006396 | 147 | 0.131 | Yeast |
| ncrna 3 end processing | GO:0043628 | 17 | 0.131 | |
| regulation of dna metabolic process | GO:0051052 | 34 | 0.124 | |
| mrna metabolic process | GO:0016071 | 124 | 0.123 | Yeast |
| larval development | GO:0002164 | 104 | 0.120 | Worm |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.119 | |
| internal protein amino acid acetylation | GO:0006475 | 38 | 0.117 | |
| peptidyl lysine modification | GO:0018205 | 57 | 0.116 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.115 | |
| regulation of programmed cell death | GO:0043067 | 152 | 0.114 | |
| cell proliferation | GO:0008283 | 299 | 0.111 | Worm |
| endocytosis | GO:0006897 | 310 | 0.107 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 266 | 0.104 | |
| snrna 3 end processing | GO:0034472 | 14 | 0.103 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.102 | |
| cellular protein modification process | GO:0006464 | 438 | 0.099 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 204 | 0.095 | |
| protein dna complex subunit organization | GO:0071824 | 86 | 0.093 | |
| developmental pigmentation | GO:0048066 | 68 | 0.092 | |
| nucleobase containing compound catabolic process | GO:0034655 | 165 | 0.090 | Yeast |
| small molecule metabolic process | GO:0044281 | 305 | 0.089 | Yeast |
| death | GO:0016265 | 284 | 0.085 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.085 | Yeast |
| snrna metabolic process | GO:0016073 | 14 | 0.083 | |
| protein acylation | GO:0043543 | 42 | 0.082 | |
| positive regulation of rna metabolic process | GO:0051254 | 271 | 0.080 | |
| regulation of dna templated transcription elongation | GO:0032784 | 17 | 0.078 | |
| rna splicing via transesterification reactions | GO:0000375 | 73 | 0.078 | Yeast |
| apoptotic process | GO:0006915 | 159 | 0.076 | |
| regulation of organelle organization | GO:0033043 | 196 | 0.072 | Worm |
| immune system process | GO:0002376 | 347 | 0.071 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.070 | Yeast |
| cellular catabolic process | GO:0044248 | 372 | 0.067 | Yeast |
| meiotic cell cycle | GO:0051321 | 171 | 0.067 | Worm |
| negative regulation of gene expression | GO:0010629 | 387 | 0.065 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.065 | Worm |
| positive regulation of molecular function | GO:0044093 | 136 | 0.064 | |
| protein dna complex assembly | GO:0065004 | 63 | 0.063 | |
| embryonic morphogenesis | GO:0048598 | 206 | 0.062 | Zebrafish Worm |
| cellular nitrogen compound catabolic process | GO:0044270 | 165 | 0.059 | Yeast |
| meiotic nuclear division | GO:0007126 | 151 | 0.058 | Worm |
| heterocycle catabolic process | GO:0046700 | 166 | 0.058 | Yeast |
| histone modification | GO:0016570 | 106 | 0.053 | |
| chromatin modification | GO:0016568 | 147 | 0.053 | |
| exocrine system development | GO:0035272 | 162 | 0.052 | |
| programmed cell death | GO:0012501 | 257 | 0.052 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.052 | |
| chromatin organization | GO:0006325 | 207 | 0.051 | |
| dendrite morphogenesis | GO:0048813 | 199 | 0.051 | |
| ncrna metabolic process | GO:0034660 | 43 | 0.051 | Yeast |
| organophosphate metabolic process | GO:0019637 | 195 | 0.051 | Yeast |
| carbohydrate derivative metabolic process | GO:1901135 | 217 | 0.049 | Yeast |
| response to other organism | GO:0051707 | 293 | 0.049 | |
| cell maturation | GO:0048469 | 144 | 0.048 | |
| aromatic compound catabolic process | GO:0019439 | 166 | 0.048 | Yeast |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.047 | |
| dna replication | GO:0006260 | 48 | 0.047 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.046 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.044 | |
| stem cell maintenance | GO:0019827 | 67 | 0.044 | |
| gene silencing | GO:0016458 | 138 | 0.044 | |
| snrna processing | GO:0016180 | 14 | 0.044 | |
| nucleotide metabolic process | GO:0009117 | 161 | 0.043 | Yeast |
| internal peptidyl lysine acetylation | GO:0018393 | 38 | 0.043 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.042 | |
| imaginal disc derived wing morphogenesis | GO:0007476 | 337 | 0.041 | |
| intracellular signal transduction | GO:0035556 | 300 | 0.040 | |
| negative regulation of rna metabolic process | GO:0051253 | 251 | 0.039 | |
| single organism biosynthetic process | GO:0044711 | 206 | 0.039 | |
| rna 3 end processing | GO:0031123 | 45 | 0.039 | |
| organic acid metabolic process | GO:0006082 | 103 | 0.038 | |
| positive regulation of cellular component organization | GO:0051130 | 156 | 0.037 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.037 | |
| protein modification process | GO:0036211 | 438 | 0.036 | |
| response to external biotic stimulus | GO:0043207 | 293 | 0.035 | |
| regulation of mrna splicing via spliceosome | GO:0048024 | 64 | 0.034 | |
| catabolic process | GO:0009056 | 409 | 0.034 | Yeast |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 130 | 0.034 | |
| cell death | GO:0008219 | 279 | 0.034 | |
| cellular response to dna damage stimulus | GO:0006974 | 223 | 0.033 | |
| regulation of molecular function | GO:0065009 | 217 | 0.033 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.033 | |
| axon development | GO:0061564 | 297 | 0.033 | |
| organelle assembly | GO:0070925 | 198 | 0.033 | |
| histone acetylation | GO:0016573 | 38 | 0.032 | |
| positive regulation of catalytic activity | GO:0043085 | 118 | 0.032 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 265 | 0.032 | |
| rna splicing | GO:0008380 | 83 | 0.032 | Yeast |
| peptidyl lysine acetylation | GO:0018394 | 39 | 0.031 | |
| response to bacterium | GO:0009617 | 198 | 0.031 | |
| brain development | GO:0007420 | 120 | 0.031 | |
| cellular amino acid metabolic process | GO:0006520 | 61 | 0.031 | |
| response to lipopolysaccharide | GO:0032496 | 4 | 0.031 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.030 | |
| regulation of mrna processing | GO:0050684 | 71 | 0.030 | |
| homeostatic process | GO:0042592 | 199 | 0.030 | |
| carboxylic acid metabolic process | GO:0019752 | 92 | 0.029 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 118 | 0.029 | |
| central nervous system development | GO:0007417 | 201 | 0.029 | |
| taxis | GO:0042330 | 304 | 0.029 | |
| response to biotic stimulus | GO:0009607 | 294 | 0.028 | |
| nucleoside phosphate metabolic process | GO:0006753 | 162 | 0.028 | Yeast |
| imaginal disc derived appendage morphogenesis | GO:0035114 | 395 | 0.028 | |
| oxoacid metabolic process | GO:0043436 | 103 | 0.028 | |
| regulation of apoptotic process | GO:0042981 | 130 | 0.028 | |
| peptidyl amino acid modification | GO:0018193 | 105 | 0.027 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.027 | Yeast |
| rna transport | GO:0050658 | 46 | 0.027 | |
| dna packaging | GO:0006323 | 91 | 0.027 | |
| rna localization | GO:0006403 | 115 | 0.026 | |
| dna repair | GO:0006281 | 54 | 0.026 | |
| regulation of chromosome organization | GO:0033044 | 64 | 0.026 | |
| antimicrobial humoral response | GO:0019730 | 99 | 0.025 | |
| intracellular transport | GO:0046907 | 228 | 0.025 | |
| innate immune response | GO:0045087 | 144 | 0.025 | |
| purine ribonucleotide metabolic process | GO:0009150 | 145 | 0.025 | Yeast |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 270 | 0.025 | |
| phagocytosis | GO:0006909 | 215 | 0.025 | |
| glycosyl compound metabolic process | GO:1901657 | 127 | 0.025 | Yeast |
| dna templated transcription elongation | GO:0006354 | 18 | 0.025 | |
| neuron projection guidance | GO:0097485 | 241 | 0.024 | |
| imaginal disc derived appendage development | GO:0048737 | 399 | 0.024 | |
| tube morphogenesis | GO:0035239 | 191 | 0.024 | Zebrafish |
| immune response | GO:0006955 | 246 | 0.024 | |
| positive regulation of hydrolase activity | GO:0051345 | 78 | 0.024 | |
| regulation of anatomical structure morphogenesis | GO:0022603 | 242 | 0.024 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 119 | 0.023 | |
| post embryonic appendage morphogenesis | GO:0035120 | 385 | 0.023 | |
| regulation of intracellular signal transduction | GO:1902531 | 236 | 0.023 | |
| regulation of developmental pigmentation | GO:0048070 | 24 | 0.023 | |
| axon guidance | GO:0007411 | 233 | 0.023 | |
| hindbrain development | GO:0030902 | 2 | 0.022 | |
| response to temperature stimulus | GO:0009266 | 106 | 0.022 | |
| rna polyadenylation | GO:0043631 | 12 | 0.022 | |
| regulation of small gtpase mediated signal transduction | GO:0051056 | 93 | 0.022 | |
| histone h2a acetylation | GO:0043968 | 1 | 0.022 | |
| regulation of transcription elongation from rna polymerase ii promoter | GO:0034243 | 15 | 0.022 | |
| organic cyclic compound catabolic process | GO:1901361 | 168 | 0.022 | Yeast |
| chromatin assembly or disassembly | GO:0006333 | 52 | 0.022 | |
| axonogenesis | GO:0007409 | 290 | 0.022 | |
| regulation of hydrolase activity | GO:0051336 | 97 | 0.021 | |
| positive regulation of protein modification process | GO:0031401 | 58 | 0.021 | |
| small gtpase mediated signal transduction | GO:0007264 | 88 | 0.021 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 267 | 0.021 | |
| dendrite development | GO:0016358 | 204 | 0.021 | |
| gene silencing by rna | GO:0031047 | 57 | 0.020 | |
| ribonucleoside monophosphate metabolic process | GO:0009161 | 51 | 0.020 | Yeast |
| response to oxygen containing compound | GO:1901700 | 200 | 0.020 | |
| proteolysis | GO:0006508 | 192 | 0.020 | |
| defense response | GO:0006952 | 300 | 0.020 | |
| regulation of rna splicing | GO:0043484 | 69 | 0.020 | |
| purine nucleoside metabolic process | GO:0042278 | 127 | 0.019 | Yeast |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.019 | |
| humoral immune response | GO:0006959 | 117 | 0.019 | |
| negative regulation of gene expression epigenetic | GO:0045814 | 77 | 0.018 | |
| response to lipid | GO:0033993 | 38 | 0.018 | |
| regulation of gene silencing | GO:0060968 | 63 | 0.018 | |
| regulation of cell division | GO:0051302 | 72 | 0.018 | Worm |
| chromatin silencing | GO:0006342 | 76 | 0.018 | |
| establishment of localization in cell | GO:0051649 | 402 | 0.018 | |
| single organism catabolic process | GO:0044712 | 228 | 0.017 | Yeast |
| purine nucleoside monophosphate metabolic process | GO:0009126 | 50 | 0.017 | Yeast |
| dna conformation change | GO:0071103 | 105 | 0.017 | |
| regulation of immune response | GO:0050776 | 118 | 0.017 | |
| nucleotide catabolic process | GO:0009166 | 109 | 0.017 | Yeast |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 119 | 0.017 | Yeast |
| ribose phosphate metabolic process | GO:0019693 | 145 | 0.016 | Yeast |
| regulation of cell morphogenesis | GO:0022604 | 163 | 0.016 | |
| ribonucleotide metabolic process | GO:0009259 | 145 | 0.016 | Yeast |
| ribonucleoside monophosphate catabolic process | GO:0009158 | 39 | 0.016 | Yeast |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.016 | |
| positive regulation of signaling | GO:0023056 | 243 | 0.016 | |
| muscle organ development | GO:0007517 | 127 | 0.016 | |
| transcription initiation from rna polymerase ii promoter | GO:0006367 | 25 | 0.016 | |
| appendage morphogenesis | GO:0035107 | 397 | 0.015 | |
| response to organic substance | GO:0010033 | 284 | 0.015 | |
| positive regulation of cellular amino acid metabolic process | GO:0045764 | 0 | 0.015 | |
| dna dependent dna replication | GO:0006261 | 17 | 0.015 | |
| purine ribonucleoside metabolic process | GO:0046128 | 127 | 0.015 | Yeast |
| purine containing compound metabolic process | GO:0072521 | 155 | 0.015 | Yeast |
| molting cycle process | GO:0022404 | 29 | 0.015 | |
| cellular response to organic substance | GO:0071310 | 132 | 0.015 | |
| cytoskeleton dependent intracellular transport | GO:0030705 | 44 | 0.015 | |
| rna interference | GO:0016246 | 27 | 0.014 | |
| regulation of cell death | GO:0010941 | 173 | 0.014 | |
| reproductive system development | GO:0061458 | 74 | 0.014 | Worm |
| cell cycle dna replication | GO:0044786 | 23 | 0.014 | |
| localization of cell | GO:0051674 | 257 | 0.014 | |
| sensory organ morphogenesis | GO:0090596 | 260 | 0.014 | |
| morphogenesis of an epithelium | GO:0002009 | 276 | 0.014 | |
| dna biosynthetic process | GO:0071897 | 24 | 0.014 | |
| eye development | GO:0001654 | 323 | 0.013 | |
| posttranscriptional gene silencing | GO:0016441 | 46 | 0.013 | |
| covalent chromatin modification | GO:0016569 | 106 | 0.013 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.013 | |
| cell cell signaling involved in cell fate commitment | GO:0045168 | 210 | 0.012 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.012 | |
| atp metabolic process | GO:0046034 | 49 | 0.012 | Yeast |
| purine nucleotide catabolic process | GO:0006195 | 109 | 0.012 | Yeast |
| nucleobase containing small molecule metabolic process | GO:0055086 | 174 | 0.012 | Yeast |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 261 | 0.012 | |
| phosphorylation | GO:0016310 | 294 | 0.012 | |
| negative regulation of developmental process | GO:0051093 | 201 | 0.012 | |
| regulation of mrna metabolic process | GO:1903311 | 72 | 0.012 | |
| heart development | GO:0007507 | 82 | 0.012 | |
| chemotaxis | GO:0006935 | 249 | 0.012 | |
| negative regulation of cell communication | GO:0010648 | 223 | 0.012 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 0 | 0.012 | |
| single organism intracellular transport | GO:1902582 | 207 | 0.012 | |
| camera type eye development | GO:0043010 | 4 | 0.012 | |
| defense response to bacterium | GO:0042742 | 178 | 0.011 | |
| muscle structure development | GO:0061061 | 224 | 0.011 | |
| regulation of mitotic cell cycle | GO:0007346 | 190 | 0.011 | |
| gland development | GO:0048732 | 191 | 0.011 | |
| body morphogenesis | GO:0010171 | 2 | 0.011 | Worm |
| regulation of neurogenesis | GO:0050767 | 158 | 0.011 | |
| mrna polyadenylation | GO:0006378 | 11 | 0.011 | |
| salivary gland morphogenesis | GO:0007435 | 145 | 0.011 | |
| cellular response to chemical stimulus | GO:0070887 | 199 | 0.011 | |
| cytoplasmic transport | GO:0016482 | 130 | 0.011 | |
| negative regulation of cell cycle process | GO:0010948 | 109 | 0.011 | |
| amine metabolic process | GO:0009308 | 12 | 0.011 | |
| cellular protein complex assembly | GO:0043623 | 71 | 0.011 | |
| stem cell differentiation | GO:0048863 | 117 | 0.011 | |
| mitotic sister chromatid segregation | GO:0000070 | 87 | 0.011 | |
| nucleoside monophosphate catabolic process | GO:0009125 | 39 | 0.011 | Yeast |
| negative regulation of rna biosynthetic process | GO:1902679 | 240 | 0.011 | |
| response to heat | GO:0009408 | 63 | 0.011 | |
| sex differentiation | GO:0007548 | 81 | 0.010 | Worm |
| alternative mrna splicing via spliceosome | GO:0000380 | 60 | 0.010 | |
| regulation of gene expression epigenetic | GO:0040029 | 128 | 0.010 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.010 | |
| oocyte differentiation | GO:0009994 | 145 | 0.010 | |
| positive regulation of intracellular signal transduction | GO:1902533 | 116 | 0.010 | |
| tube development | GO:0035295 | 244 | 0.010 | Zebrafish |
| positive regulation of protein metabolic process | GO:0051247 | 128 | 0.010 | |
| oocyte development | GO:0048599 | 124 | 0.010 | |
| telomere organization | GO:0032200 | 21 | 0.010 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 85 | 0.010 | |