| chromosome organization | GO:0051276 | 360 | 0.135 | |
| imaginal disc derived appendage development | GO:0048737 | 399 | 0.088 | |
| post embryonic appendage morphogenesis | GO:0035120 | 385 | 0.072 | |
| dna packaging | GO:0006323 | 91 | 0.071 | |
| protein complex assembly | GO:0006461 | 200 | 0.062 | |
| centrosome cycle | GO:0007098 | 137 | 0.059 | |
| wing disc morphogenesis | GO:0007472 | 344 | 0.054 | |
| centrosome organization | GO:0051297 | 163 | 0.052 | |
| protein dna complex assembly | GO:0065004 | 63 | 0.051 | |
| regulation of localization | GO:0032879 | 275 | 0.051 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.050 | |
| dna metabolic process | GO:0006259 | 227 | 0.050 | |
| dna conformation change | GO:0071103 | 105 | 0.047 | |
| chromatin assembly or disassembly | GO:0006333 | 52 | 0.046 | |
| protein complex biogenesis | GO:0070271 | 201 | 0.046 | |
| chromatin organization | GO:0006325 | 207 | 0.045 | |
| negative regulation of gene expression | GO:0010629 | 387 | 0.045 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.043 | |
| imaginal disc derived wing morphogenesis | GO:0007476 | 337 | 0.042 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 117 | 0.041 | |
| microtubule organizing center organization | GO:0031023 | 168 | 0.039 | |
| appendage morphogenesis | GO:0035107 | 397 | 0.038 | |
| regulation of transport | GO:0051049 | 181 | 0.038 | |
| cellular macromolecular complex assembly | GO:0034622 | 153 | 0.037 | |
| organic substance transport | GO:0071702 | 257 | 0.037 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.037 | |
| single organism behavior | GO:0044708 | 391 | 0.035 | |
| endocytosis | GO:0006897 | 310 | 0.035 | |
| centrosome duplication | GO:0051298 | 121 | 0.034 | |
| kidney development | GO:0001822 | 3 | 0.034 | |
| respiratory system development | GO:0060541 | 213 | 0.034 | |
| cellular response to abiotic stimulus | GO:0071214 | 58 | 0.033 | |
| chromatin assembly | GO:0031497 | 48 | 0.032 | |
| cellular catabolic process | GO:0044248 | 372 | 0.032 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.032 | |
| phagocytosis | GO:0006909 | 215 | 0.032 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.032 | |
| catabolic process | GO:0009056 | 409 | 0.032 | |
| regulation of gene expression epigenetic | GO:0040029 | 128 | 0.032 | |
| single organism biosynthetic process | GO:0044711 | 206 | 0.031 | |
| nucleosome organization | GO:0034728 | 59 | 0.031 | |
| homeostatic process | GO:0042592 | 199 | 0.031 | |
| morphogenesis of an epithelium | GO:0002009 | 276 | 0.030 | |
| imaginal disc derived appendage morphogenesis | GO:0035114 | 395 | 0.030 | |
| segmentation | GO:0035282 | 207 | 0.029 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.029 | |
| columnar cuboidal epithelial cell differentiation | GO:0002065 | 256 | 0.028 | |
| cell death | GO:0008219 | 279 | 0.028 | |
| appendage development | GO:0048736 | 401 | 0.028 | |
| nuclear division | GO:0000280 | 332 | 0.027 | |
| protein dna complex subunit organization | GO:0071824 | 86 | 0.027 | |
| regulation of anatomical structure size | GO:0090066 | 163 | 0.027 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.027 | |
| protein modification process | GO:0036211 | 438 | 0.027 | |
| negative regulation of signal transduction | GO:0009968 | 206 | 0.027 | |
| negative regulation of signaling | GO:0023057 | 219 | 0.026 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 165 | 0.026 | |
| response to organic substance | GO:0010033 | 284 | 0.025 | |
| response to other organism | GO:0051707 | 293 | 0.024 | |
| neutral lipid biosynthetic process | GO:0046460 | 2 | 0.024 | |
| response to biotic stimulus | GO:0009607 | 294 | 0.024 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.023 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 265 | 0.023 | |
| cell division | GO:0051301 | 248 | 0.023 | |
| negative regulation of cell communication | GO:0010648 | 223 | 0.023 | |
| meiotic cell cycle | GO:0051321 | 171 | 0.023 | |
| eye pigment metabolic process | GO:0042441 | 33 | 0.023 | |
| embryonic morphogenesis | GO:0048598 | 206 | 0.022 | |
| positive regulation of transport | GO:0051050 | 92 | 0.022 | |
| eye development | GO:0001654 | 323 | 0.022 | |
| organophosphate metabolic process | GO:0019637 | 195 | 0.022 | |
| embryonic pattern specification | GO:0009880 | 174 | 0.022 | |
| establishment of localization in cell | GO:0051649 | 402 | 0.022 | |
| single organism catabolic process | GO:0044712 | 228 | 0.021 | |
| pigment biosynthetic process | GO:0046148 | 36 | 0.021 | |
| response to light stimulus | GO:0009416 | 124 | 0.021 | |
| regionalization | GO:0003002 | 416 | 0.021 | |
| secretion | GO:0046903 | 109 | 0.020 | |
| mrna metabolic process | GO:0016071 | 124 | 0.020 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.020 | |
| body morphogenesis | GO:0010171 | 2 | 0.020 | |
| response to external biotic stimulus | GO:0043207 | 293 | 0.020 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.020 | |
| regulation of cell cycle phase transition | GO:1901987 | 130 | 0.019 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 145 | 0.019 | |
| cellular protein modification process | GO:0006464 | 438 | 0.019 | |
| amine metabolic process | GO:0009308 | 12 | 0.019 | |
| positive regulation of lipid storage | GO:0010884 | 4 | 0.019 | |
| carboxylic acid metabolic process | GO:0019752 | 92 | 0.019 | |
| pigmentation | GO:0043473 | 75 | 0.019 | |
| chromatin silencing | GO:0006342 | 76 | 0.019 | |
| cellular response to starvation | GO:0009267 | 61 | 0.019 | |
| carbohydrate derivative metabolic process | GO:1901135 | 217 | 0.018 | |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.018 | |
| protein localization | GO:0008104 | 284 | 0.018 | |
| epithelial cell differentiation | GO:0030855 | 322 | 0.018 | |
| organic acid metabolic process | GO:0006082 | 103 | 0.018 | |
| intracellular transport | GO:0046907 | 228 | 0.018 | |
| response to organophosphorus | GO:0046683 | 2 | 0.018 | |
| compound eye morphogenesis | GO:0001745 | 249 | 0.018 | |
| eye pigmentation | GO:0048069 | 43 | 0.018 | |
| columnar cuboidal epithelial cell development | GO:0002066 | 249 | 0.018 | |
| cholesterol homeostasis | GO:0042632 | 3 | 0.018 | |
| intracellular signal transduction | GO:0035556 | 300 | 0.018 | |
| salivary gland morphogenesis | GO:0007435 | 145 | 0.018 | |
| regulation of sequestering of triglyceride | GO:0010889 | 3 | 0.017 | |
| regulation of response to stress | GO:0080134 | 200 | 0.017 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 240 | 0.017 | |
| gene silencing | GO:0016458 | 138 | 0.017 | |
| acylglycerol biosynthetic process | GO:0046463 | 2 | 0.017 | |
| cellular amine metabolic process | GO:0044106 | 12 | 0.017 | |
| immune response | GO:0006955 | 246 | 0.017 | |
| cellular response to organic substance | GO:0071310 | 132 | 0.017 | |
| response to radiation | GO:0009314 | 155 | 0.017 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.017 | |
| negative regulation of biosynthetic process | GO:0009890 | 277 | 0.017 | |
| compound eye development | GO:0048749 | 307 | 0.016 | |
| response to lipopolysaccharide | GO:0032496 | 4 | 0.016 | |
| biological adhesion | GO:0022610 | 138 | 0.016 | |
| rna splicing via transesterification reactions with bulged adenosine as nucleophile | GO:0000377 | 73 | 0.016 | |
| cellular response to chemical stimulus | GO:0070887 | 199 | 0.016 | |
| establishment of protein localization | GO:0045184 | 163 | 0.016 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.016 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 267 | 0.016 | |
| regulation of proteolysis | GO:0030162 | 87 | 0.016 | |
| ion transmembrane transport | GO:0034220 | 122 | 0.016 | |
| protein transport | GO:0015031 | 155 | 0.016 | |
| tissue morphogenesis | GO:0048729 | 297 | 0.016 | |
| response to nutrient levels | GO:0031667 | 114 | 0.016 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 78 | 0.016 | |
| response to oxygen containing compound | GO:1901700 | 200 | 0.016 | |
| organelle fission | GO:0048285 | 340 | 0.016 | |
| cell adhesion | GO:0007155 | 136 | 0.016 | |
| gland development | GO:0048732 | 191 | 0.015 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.015 | |
| anatomical structure homeostasis | GO:0060249 | 97 | 0.015 | |
| cellular amino acid metabolic process | GO:0006520 | 61 | 0.015 | |
| locomotory behavior | GO:0007626 | 176 | 0.015 | |
| cellular response to endogenous stimulus | GO:0071495 | 80 | 0.015 | |
| defense response | GO:0006952 | 300 | 0.015 | |
| regulation of organelle organization | GO:0033043 | 196 | 0.015 | |
| response to copper ion | GO:0046688 | 4 | 0.015 | |
| organic cyclic compound catabolic process | GO:1901361 | 168 | 0.015 | |
| meiotic nuclear division | GO:0007126 | 151 | 0.015 | |
| adult locomotory behavior | GO:0008344 | 76 | 0.015 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 3 | 0.015 | |
| maintenance of location | GO:0051235 | 73 | 0.015 | |
| mating | GO:0007618 | 120 | 0.015 | |
| death | GO:0016265 | 284 | 0.015 | |
| pigment metabolic process involved in developmental pigmentation | GO:0043324 | 33 | 0.014 | |
| cellular response to dna damage stimulus | GO:0006974 | 223 | 0.014 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.014 | |
| regulation of cellular catabolic process | GO:0031329 | 157 | 0.014 | |
| acylglycerol catabolic process | GO:0046464 | 3 | 0.014 | |
| modification dependent protein catabolic process | GO:0019941 | 78 | 0.014 | |
| eye photoreceptor cell development | GO:0042462 | 81 | 0.014 | |
| oxoacid metabolic process | GO:0043436 | 103 | 0.014 | |
| rna localization | GO:0006403 | 115 | 0.014 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 174 | 0.014 | |
| ethanolamine containing compound metabolic process | GO:0042439 | 4 | 0.014 | |
| lipid storage | GO:0019915 | 38 | 0.014 | |
| transmembrane transport | GO:0055085 | 139 | 0.014 | |
| nucleobase containing compound catabolic process | GO:0034655 | 165 | 0.014 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.014 | |
| anion homeostasis | GO:0055081 | 3 | 0.014 | |
| programmed cell death | GO:0012501 | 257 | 0.014 | |
| spindle organization | GO:0007051 | 253 | 0.014 | |
| immune system process | GO:0002376 | 347 | 0.014 | |
| positive regulation of signaling | GO:0023056 | 243 | 0.014 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 240 | 0.014 | |
| blastoderm segmentation | GO:0007350 | 159 | 0.013 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 261 | 0.013 | |
| monocarboxylic acid transport | GO:0015718 | 3 | 0.013 | |
| negative regulation of rna metabolic process | GO:0051253 | 251 | 0.013 | |
| neurological system process | GO:0050877 | 358 | 0.013 | |
| photoreceptor cell differentiation | GO:0046530 | 170 | 0.013 | |
| lipid localization | GO:0010876 | 54 | 0.013 | |
| regulation of anatomical structure morphogenesis | GO:0022603 | 242 | 0.013 | |
| cellular protein catabolic process | GO:0044257 | 83 | 0.013 | |
| cytoplasmic transport | GO:0016482 | 130 | 0.013 | |
| innate immune response | GO:0045087 | 144 | 0.013 | |
| secondary metabolite biosynthetic process | GO:0044550 | 24 | 0.013 | |
| eye photoreceptor cell differentiation | GO:0001754 | 145 | 0.013 | |
| regulation of protein catabolic process | GO:0042176 | 55 | 0.013 | |
| cellular ketone metabolic process | GO:0042180 | 24 | 0.013 | |
| sterol homeostasis | GO:0055092 | 4 | 0.013 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.013 | |
| positive regulation of sequestering of triglyceride | GO:0010890 | 1 | 0.013 | |
| reproductive behavior | GO:0019098 | 122 | 0.013 | |
| developmental programmed cell death | GO:0010623 | 138 | 0.013 | |
| regulation of cell morphogenesis | GO:0022604 | 163 | 0.013 | |
| chromosome segregation | GO:0007059 | 157 | 0.013 | |
| synaptic transmission | GO:0007268 | 288 | 0.013 | |
| axis specification | GO:0009798 | 167 | 0.013 | |
| aromatic compound catabolic process | GO:0019439 | 166 | 0.013 | |
| epithelial cell development | GO:0002064 | 274 | 0.013 | |
| mrna processing | GO:0006397 | 104 | 0.012 | |
| organelle assembly | GO:0070925 | 198 | 0.012 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.012 | |
| developmental pigmentation | GO:0048066 | 68 | 0.012 | |
| spermatid differentiation | GO:0048515 | 114 | 0.012 | |
| nucleosome assembly | GO:0006334 | 35 | 0.012 | |
| rhythmic process | GO:0048511 | 106 | 0.012 | |
| purine nucleotide metabolic process | GO:0006163 | 146 | 0.012 | |
| cholesterol transport | GO:0030301 | 2 | 0.012 | |
| negative regulation of cell cycle | GO:0045786 | 116 | 0.012 | |
| heterocycle catabolic process | GO:0046700 | 166 | 0.012 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.012 | |
| regulation of mrna metabolic process | GO:1903311 | 72 | 0.012 | |
| intracellular protein transport | GO:0006886 | 104 | 0.012 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.012 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 139 | 0.012 | |
| cellular response to radiation | GO:0071478 | 52 | 0.012 | |
| learning or memory | GO:0007611 | 141 | 0.012 | |
| rna processing | GO:0006396 | 147 | 0.012 | |
| notch signaling pathway | GO:0007219 | 120 | 0.012 | |
| circadian rhythm | GO:0007623 | 105 | 0.012 | |
| rna splicing via transesterification reactions | GO:0000375 | 73 | 0.012 | |
| morphogenesis of embryonic epithelium | GO:0016331 | 94 | 0.012 | |
| regulation of immune response | GO:0050776 | 118 | 0.012 | |
| regulation of notch signaling pathway | GO:0008593 | 100 | 0.012 | |
| neutral lipid catabolic process | GO:0046461 | 3 | 0.012 | |
| negative regulation of transcription dna templated | GO:0045892 | 237 | 0.012 | |
| protein processing | GO:0016485 | 68 | 0.012 | |
| exocrine system development | GO:0035272 | 162 | 0.011 | |
| phosphorylation | GO:0016310 | 294 | 0.011 | |
| histolysis | GO:0007559 | 102 | 0.011 | |
| developmental growth | GO:0048589 | 280 | 0.011 | |
| proteasomal protein catabolic process | GO:0010498 | 59 | 0.011 | |
| multi multicellular organism process | GO:0044706 | 123 | 0.011 | |
| ovarian follicle cell development | GO:0030707 | 248 | 0.011 | |
| regulation of cellular component biogenesis | GO:0044087 | 201 | 0.011 | |
| proteolysis | GO:0006508 | 192 | 0.011 | |
| developmental maturation | GO:0021700 | 172 | 0.011 | |
| photoreceptor cell development | GO:0042461 | 96 | 0.011 | |
| nitrogen compound transport | GO:0071705 | 85 | 0.011 | |
| rrna processing | GO:0006364 | 3 | 0.011 | |
| regulation of lipid transport | GO:0032368 | 3 | 0.011 | |
| vitamin metabolic process | GO:0006766 | 2 | 0.011 | |
| pigment metabolic process involved in pigmentation | GO:0043474 | 33 | 0.011 | |
| response to calcium ion | GO:0051592 | 1 | 0.011 | |
| regulation of mrna splicing via spliceosome | GO:0048024 | 64 | 0.011 | |
| nucleoside phosphate metabolic process | GO:0006753 | 162 | 0.011 | |
| regulation of immune system process | GO:0002682 | 176 | 0.011 | |
| mrna catabolic process | GO:0006402 | 33 | 0.011 | |
| multicellular organismal aging | GO:0010259 | 140 | 0.011 | |
| synapse organization | GO:0050808 | 196 | 0.011 | |
| gland morphogenesis | GO:0022612 | 145 | 0.011 | |
| regulation of cellular amine metabolic process | GO:0033238 | 3 | 0.011 | |
| defense response to bacterium | GO:0042742 | 178 | 0.011 | |
| humoral immune response | GO:0006959 | 117 | 0.011 | |
| cell cycle phase transition | GO:0044770 | 140 | 0.011 | |
| salivary gland histolysis | GO:0035070 | 88 | 0.011 | |
| autophagic cell death | GO:0048102 | 83 | 0.011 | |
| rna catabolic process | GO:0006401 | 37 | 0.011 | |
| lateral inhibition | GO:0046331 | 206 | 0.011 | |
| triglyceride biosynthetic process | GO:0019432 | 2 | 0.011 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 83 | 0.011 | |
| response to hexose | GO:0009746 | 3 | 0.011 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 152 | 0.010 | |
| sister chromatid segregation | GO:0000819 | 92 | 0.010 | |
| mesenchymal cell differentiation | GO:0048762 | 1 | 0.010 | |
| regulation of catabolic process | GO:0009894 | 170 | 0.010 | |
| nuclear transport | GO:0051169 | 72 | 0.010 | |
| nucleobase containing compound transport | GO:0015931 | 56 | 0.010 | |
| rna splicing | GO:0008380 | 83 | 0.010 | |
| synapse assembly | GO:0007416 | 143 | 0.010 | |
| eye morphogenesis | GO:0048592 | 260 | 0.010 | |
| alternative mrna splicing via spliceosome | GO:0000380 | 60 | 0.010 | |
| cell cell signaling involved in cell fate commitment | GO:0045168 | 210 | 0.010 | |
| response to extracellular stimulus | GO:0009991 | 116 | 0.010 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.010 | |
| growth | GO:0040007 | 359 | 0.010 | |
| stem cell differentiation | GO:0048863 | 117 | 0.010 | |
| embryonic development via the syncytial blastoderm | GO:0001700 | 148 | 0.010 | |
| regulation of mrna processing | GO:0050684 | 71 | 0.010 | |
| tissue death | GO:0016271 | 102 | 0.010 | |
| protein catabolic process | GO:0030163 | 101 | 0.010 | |