| protein modification by small protein conjugation or removal | GO:0070647 | 106 | 0.139 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 270 | 0.131 | |
| defense response | GO:0006952 | 300 | 0.100 | |
| cell motility | GO:0048870 | 251 | 0.093 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.089 | |
| eye development | GO:0001654 | 323 | 0.087 | |
| regulation of intracellular signal transduction | GO:1902531 | 236 | 0.082 | |
| eye morphogenesis | GO:0048592 | 260 | 0.079 | |
| cellular protein modification process | GO:0006464 | 438 | 0.076 | |
| columnar cuboidal epithelial cell development | GO:0002066 | 249 | 0.068 | |
| regulation of cell differentiation | GO:0045595 | 302 | 0.065 | |
| epithelial cell differentiation | GO:0030855 | 322 | 0.065 | |
| intracellular signal transduction | GO:0035556 | 300 | 0.064 | |
| negative regulation of response to stimulus | GO:0048585 | 258 | 0.063 | |
| oocyte differentiation | GO:0009994 | 145 | 0.062 | |
| establishment or maintenance of cell polarity | GO:0007163 | 167 | 0.061 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 240 | 0.061 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 261 | 0.059 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.058 | |
| regulation of response to stress | GO:0080134 | 200 | 0.057 | |
| protein modification by small protein conjugation | GO:0032446 | 79 | 0.056 | |
| organelle fission | GO:0048285 | 340 | 0.056 | |
| epithelial cell development | GO:0002064 | 274 | 0.055 | |
| regulation of phosphorus metabolic process | GO:0051174 | 210 | 0.054 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 240 | 0.054 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 267 | 0.053 | |
| blastoderm segmentation | GO:0007350 | 159 | 0.051 | |
| purine nucleoside metabolic process | GO:0042278 | 127 | 0.051 | |
| programmed cell death | GO:0012501 | 257 | 0.050 | |
| negative regulation of biosynthetic process | GO:0009890 | 277 | 0.049 | |
| apoptotic process | GO:0006915 | 159 | 0.048 | |
| response to biotic stimulus | GO:0009607 | 294 | 0.048 | |
| immune system process | GO:0002376 | 347 | 0.047 | |
| compound eye development | GO:0048749 | 307 | 0.046 | |
| oocyte development | GO:0048599 | 124 | 0.046 | |
| negative regulation of rna metabolic process | GO:0051253 | 251 | 0.044 | |
| embryonic pattern specification | GO:0009880 | 174 | 0.044 | |
| response to other organism | GO:0051707 | 293 | 0.043 | |
| death | GO:0016265 | 284 | 0.043 | |
| photoreceptor cell differentiation | GO:0046530 | 170 | 0.042 | |
| cell death | GO:0008219 | 279 | 0.042 | |
| appendage morphogenesis | GO:0035107 | 397 | 0.041 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.041 | |
| organophosphate metabolic process | GO:0019637 | 195 | 0.041 | |
| segmentation | GO:0035282 | 207 | 0.041 | |
| negative regulation of cell communication | GO:0010648 | 223 | 0.041 | |
| negative regulation of signaling | GO:0023057 | 219 | 0.040 | |
| ribonucleoside metabolic process | GO:0009119 | 127 | 0.040 | |
| wing disc morphogenesis | GO:0007472 | 344 | 0.038 | |
| signal transduction by phosphorylation | GO:0023014 | 107 | 0.038 | |
| sensory organ morphogenesis | GO:0090596 | 260 | 0.037 | |
| brain development | GO:0007420 | 120 | 0.037 | |
| tissue migration | GO:0090130 | 155 | 0.037 | |
| ommatidial rotation | GO:0016318 | 20 | 0.037 | |
| regulation of cellular catabolic process | GO:0031329 | 157 | 0.036 | |
| protein ubiquitination | GO:0016567 | 70 | 0.036 | |
| cellular catabolic process | GO:0044248 | 372 | 0.035 | |
| regulation of mapk cascade | GO:0043408 | 92 | 0.035 | |
| tripartite regional subdivision | GO:0007351 | 103 | 0.035 | |
| negative regulation of cell differentiation | GO:0045596 | 143 | 0.034 | |
| phosphorylation | GO:0016310 | 294 | 0.034 | |
| regulation of molecular function | GO:0065009 | 217 | 0.034 | |
| rho protein signal transduction | GO:0007266 | 14 | 0.033 | |
| regulation of cell development | GO:0060284 | 215 | 0.033 | |
| eye photoreceptor cell differentiation | GO:0001754 | 145 | 0.033 | |
| negative regulation of transcription dna templated | GO:0045892 | 237 | 0.033 | |
| regulation of multicellular organismal development | GO:2000026 | 414 | 0.032 | Mouse |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 265 | 0.032 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.032 | |
| appendage development | GO:0048736 | 401 | 0.032 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.032 | |
| protein modification process | GO:0036211 | 438 | 0.032 | |
| embryonic axis specification | GO:0000578 | 107 | 0.031 | |
| dendrite development | GO:0016358 | 204 | 0.031 | |
| columnar cuboidal epithelial cell differentiation | GO:0002065 | 256 | 0.031 | |
| compound eye morphogenesis | GO:0001745 | 249 | 0.031 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.031 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 119 | 0.030 | |
| cell type specific apoptotic process | GO:0097285 | 38 | 0.030 | |
| camera type eye development | GO:0043010 | 4 | 0.029 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 120 | 0.029 | |
| post embryonic appendage morphogenesis | GO:0035120 | 385 | 0.028 | |
| actin filament based process | GO:0030029 | 220 | 0.028 | |
| negative regulation of signal transduction | GO:0009968 | 206 | 0.028 | |
| ras protein signal transduction | GO:0007265 | 88 | 0.027 | |
| small gtpase mediated signal transduction | GO:0007264 | 88 | 0.027 | |
| regulation of immune system process | GO:0002682 | 176 | 0.027 | |
| regulation of phosphorylation | GO:0042325 | 147 | 0.027 | |
| compound eye photoreceptor cell differentiation | GO:0001751 | 140 | 0.026 | |
| anterior posterior pattern specification | GO:0009952 | 136 | 0.026 | |
| negative regulation of gene expression | GO:0010629 | 387 | 0.026 | |
| response to external biotic stimulus | GO:0043207 | 293 | 0.026 | |
| maternal determination of anterior posterior axis embryo | GO:0008358 | 74 | 0.026 | |
| imaginal disc derived appendage morphogenesis | GO:0035114 | 395 | 0.026 | |
| catabolic process | GO:0009056 | 409 | 0.026 | |
| regulation of ras protein signal transduction | GO:0046578 | 93 | 0.025 | |
| anterior posterior axis specification embryo | GO:0008595 | 103 | 0.025 | |
| head development | GO:0060322 | 135 | 0.025 | |
| positive regulation of signaling | GO:0023056 | 243 | 0.025 | |
| ribose phosphate metabolic process | GO:0019693 | 145 | 0.024 | |
| regulation of cell death | GO:0010941 | 173 | 0.024 | |
| establishment or maintenance of microtubule cytoskeleton polarity | GO:0030951 | 41 | 0.024 | |
| carbohydrate derivative metabolic process | GO:1901135 | 217 | 0.024 | |
| response to oxygen containing compound | GO:1901700 | 200 | 0.024 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.024 | |
| single organism catabolic process | GO:0044712 | 228 | 0.023 | |
| cell recognition | GO:0008037 | 102 | 0.023 | |
| regulation of small gtpase mediated signal transduction | GO:0051056 | 93 | 0.023 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.023 | |
| neuron recognition | GO:0008038 | 101 | 0.023 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.023 | |
| cell proliferation | GO:0008283 | 299 | 0.023 | |
| regulation of apoptotic process | GO:0042981 | 130 | 0.022 | |
| defense response to other organism | GO:0098542 | 225 | 0.022 | |
| regulation of phosphate metabolic process | GO:0019220 | 210 | 0.022 | |
| regulation of programmed cell death | GO:0043067 | 152 | 0.022 | |
| cellular macromolecular complex assembly | GO:0034622 | 153 | 0.021 | |
| regionalization | GO:0003002 | 416 | 0.021 | |
| nucleotide metabolic process | GO:0009117 | 161 | 0.021 | |
| hindbrain development | GO:0030902 | 2 | 0.021 | |
| positive regulation of signal transduction | GO:0009967 | 223 | 0.021 | |
| antimicrobial humoral response | GO:0019730 | 99 | 0.020 | |
| cellular response to chemical stimulus | GO:0070887 | 199 | 0.020 | |
| response to organic substance | GO:0010033 | 284 | 0.019 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.019 | |
| purine containing compound metabolic process | GO:0072521 | 155 | 0.019 | |
| homeostatic process | GO:0042592 | 199 | 0.019 | |
| imaginal disc derived wing morphogenesis | GO:0007476 | 337 | 0.019 | |
| purine ribonucleoside metabolic process | GO:0046128 | 127 | 0.019 | |
| oocyte construction | GO:0007308 | 112 | 0.019 | |
| chromatin modification | GO:0016568 | 147 | 0.019 | |
| ameboidal type cell migration | GO:0001667 | 151 | 0.018 | |
| axis specification | GO:0009798 | 167 | 0.018 | |
| response to bacterium | GO:0009617 | 198 | 0.018 | |
| anterior posterior axis specification | GO:0009948 | 109 | 0.018 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.018 | |
| glycosyl compound metabolic process | GO:1901657 | 127 | 0.018 | |
| regulation of reproductive process | GO:2000241 | 54 | 0.018 | |
| cell maturation | GO:0048469 | 144 | 0.018 | |
| positive regulation of developmental process | GO:0051094 | 143 | 0.017 | |
| cytoplasm organization | GO:0007028 | 64 | 0.017 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 145 | 0.017 | |
| open tracheal system development | GO:0007424 | 204 | 0.017 | |
| chorion containing eggshell formation | GO:0007304 | 105 | 0.017 | |
| negative regulation of cell cycle | GO:0045786 | 116 | 0.017 | |
| retina development in camera type eye | GO:0060041 | 4 | 0.017 | |
| mapk cascade | GO:0000165 | 107 | 0.017 | |
| purine ribonucleotide metabolic process | GO:0009150 | 145 | 0.016 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 108 | 0.016 | |
| response to alcohol | GO:0097305 | 95 | 0.016 | |
| regulation of cell cycle phase transition | GO:1901987 | 130 | 0.016 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.016 | |
| proteolysis | GO:0006508 | 192 | 0.016 | |
| salivary gland morphogenesis | GO:0007435 | 145 | 0.016 | Mouse |
| morphogenesis of a polarized epithelium | GO:0001738 | 93 | 0.016 | |
| multi organism behavior | GO:0051705 | 175 | 0.016 | |
| cell division | GO:0051301 | 248 | 0.016 | |
| regulation of catabolic process | GO:0009894 | 170 | 0.016 | |
| stem cell maintenance | GO:0019827 | 67 | 0.016 | |
| regulation of cell cycle process | GO:0010564 | 181 | 0.016 | |
| ribonucleotide metabolic process | GO:0009259 | 145 | 0.016 | |
| body morphogenesis | GO:0010171 | 2 | 0.015 | |
| embryonic organ development | GO:0048568 | 50 | 0.015 | |
| forebrain development | GO:0030900 | 2 | 0.015 | |
| oocyte anterior posterior axis specification | GO:0007314 | 72 | 0.015 | |
| lateral inhibition | GO:0046331 | 206 | 0.015 | |
| ovarian follicle cell development | GO:0030707 | 248 | 0.015 | |
| mitotic cell cycle phase transition | GO:0044772 | 138 | 0.015 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.015 | |
| heterocycle catabolic process | GO:0046700 | 166 | 0.015 | |
| cellular component assembly involved in morphogenesis | GO:0010927 | 151 | 0.015 | |
| purine ribonucleotide catabolic process | GO:0009154 | 109 | 0.015 | |
| regulation of mrna metabolic process | GO:1903311 | 72 | 0.015 | |
| negative regulation of developmental process | GO:0051093 | 201 | 0.015 | |
| organophosphate catabolic process | GO:0046434 | 112 | 0.015 | |
| protein localization | GO:0008104 | 284 | 0.015 | |
| stress activated protein kinase signaling cascade | GO:0031098 | 55 | 0.015 | |
| rna processing | GO:0006396 | 147 | 0.015 | |
| purine nucleoside catabolic process | GO:0006152 | 112 | 0.015 | |
| axon development | GO:0061564 | 297 | 0.015 | |
| localization of cell | GO:0051674 | 257 | 0.014 | |
| nucleoside phosphate metabolic process | GO:0006753 | 162 | 0.014 | |
| aromatic compound catabolic process | GO:0019439 | 166 | 0.014 | |
| defense response to bacterium | GO:0042742 | 178 | 0.014 | |
| organic cyclic compound catabolic process | GO:1901361 | 168 | 0.014 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 174 | 0.014 | |
| protein complex biogenesis | GO:0070271 | 201 | 0.014 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.014 | |
| stem cell differentiation | GO:0048863 | 117 | 0.014 | |
| regulation of chromosome organization | GO:0033044 | 64 | 0.014 | |
| regulation of multi organism process | GO:0043900 | 131 | 0.014 | |
| nucleobase containing compound catabolic process | GO:0034655 | 165 | 0.014 | |
| regulation of nervous system development | GO:0051960 | 248 | 0.014 | |
| gland morphogenesis | GO:0022612 | 145 | 0.014 | Mouse |
| single organism biosynthetic process | GO:0044711 | 206 | 0.014 | |
| wnt signaling pathway | GO:0016055 | 98 | 0.014 | |
| purine nucleotide catabolic process | GO:0006195 | 109 | 0.013 | |
| regulation of translation | GO:0006417 | 56 | 0.013 | |
| cell cycle phase transition | GO:0044770 | 140 | 0.013 | |
| regulation of cellular response to stress | GO:0080135 | 89 | 0.013 | |
| cell cell signaling involved in cell fate commitment | GO:0045168 | 210 | 0.013 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 139 | 0.013 | |
| oocyte axis specification | GO:0007309 | 108 | 0.013 | |
| response to heat | GO:0009408 | 63 | 0.013 | |
| imaginal disc derived appendage development | GO:0048737 | 399 | 0.013 | |
| reproductive behavior | GO:0019098 | 122 | 0.013 | |
| actin cytoskeleton organization | GO:0030036 | 206 | 0.013 | |
| regulation of cell proliferation | GO:0042127 | 163 | 0.013 | |
| regulation of organelle organization | GO:0033043 | 196 | 0.013 | |
| organic substance transport | GO:0071702 | 257 | 0.013 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.013 | |
| regulation of nucleotide catabolic process | GO:0030811 | 48 | 0.013 | |
| carboxylic acid metabolic process | GO:0019752 | 92 | 0.013 | |
| enzyme linked receptor protein signaling pathway | GO:0007167 | 179 | 0.013 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 139 | 0.013 | |
| protein maturation | GO:0051604 | 71 | 0.012 | |
| positive regulation of cellular component organization | GO:0051130 | 156 | 0.012 | |
| neural precursor cell proliferation | GO:0061351 | 75 | 0.012 | |
| negative regulation of immune system process | GO:0002683 | 50 | 0.012 | |
| respiratory system development | GO:0060541 | 213 | 0.012 | |
| neuron projection guidance | GO:0097485 | 241 | 0.012 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 204 | 0.012 | |
| positive regulation of multicellular organismal process | GO:0051240 | 143 | 0.012 | |
| positive regulation of mapk cascade | GO:0043410 | 63 | 0.012 | |
| regulation of cellular localization | GO:0060341 | 136 | 0.012 | |
| cell cycle checkpoint | GO:0000075 | 95 | 0.012 | |
| salivary gland development | GO:0007431 | 162 | 0.012 | Mouse |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 130 | 0.012 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.012 | |
| negative regulation of mitotic cell cycle phase transition | GO:1901991 | 103 | 0.012 | |
| ribonucleotide catabolic process | GO:0009261 | 109 | 0.012 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.012 | |
| photoreceptor cell development | GO:0042461 | 96 | 0.012 | |
| axon guidance | GO:0007411 | 233 | 0.012 | |
| ribonucleoside catabolic process | GO:0042454 | 112 | 0.012 | |
| pole plasm oskar mrna localization | GO:0045451 | 46 | 0.012 | |
| response to lipopolysaccharide | GO:0032496 | 4 | 0.012 | |
| regulation of localization | GO:0032879 | 275 | 0.012 | |
| connective tissue development | GO:0061448 | 3 | 0.012 | |
| regulation of transport | GO:0051049 | 181 | 0.012 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.012 | |
| cellular response to oxygen containing compound | GO:1901701 | 79 | 0.011 | |
| purine ribonucleoside catabolic process | GO:0046130 | 112 | 0.011 | |
| regulation of immune response | GO:0050776 | 118 | 0.011 | |
| regulation of alternative mrna splicing via spliceosome | GO:0000381 | 60 | 0.011 | |
| mating | GO:0007618 | 120 | 0.011 | |
| regulation of protein modification process | GO:0031399 | 112 | 0.011 | |
| eye photoreceptor cell development | GO:0042462 | 81 | 0.011 | |
| purine nucleotide metabolic process | GO:0006163 | 146 | 0.011 | |
| cellular response to organic substance | GO:0071310 | 132 | 0.011 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 119 | 0.011 | |
| stem cell development | GO:0048864 | 79 | 0.011 | |
| multi organism reproductive behavior | GO:0044705 | 121 | 0.011 | |
| nucleoside catabolic process | GO:0009164 | 112 | 0.011 | |
| peptide metabolic process | GO:0006518 | 80 | 0.011 | |
| central nervous system development | GO:0007417 | 201 | 0.011 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.011 | |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.011 | |
| tissue morphogenesis | GO:0048729 | 297 | 0.011 | Mouse |
| mrna processing | GO:0006397 | 104 | 0.011 | |
| chemotaxis | GO:0006935 | 249 | 0.011 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.011 | |
| organonitrogen compound catabolic process | GO:1901565 | 128 | 0.010 | |
| gene silencing | GO:0016458 | 138 | 0.010 | |
| regulation of stress activated mapk cascade | GO:0032872 | 41 | 0.010 | |
| protein complex assembly | GO:0006461 | 200 | 0.010 | |
| purine containing compound catabolic process | GO:0072523 | 112 | 0.010 | |
| regulation of purine nucleotide metabolic process | GO:1900542 | 62 | 0.010 | |
| epithelial cell migration | GO:0010631 | 148 | 0.010 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 119 | 0.010 | |
| dna metabolic process | GO:0006259 | 227 | 0.010 | |
| regulation of defense response | GO:0031347 | 102 | 0.010 | |
| atp catabolic process | GO:0006200 | 38 | 0.010 | |
| multicellular organismal reproductive behavior | GO:0033057 | 110 | 0.010 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 152 | 0.010 | |
| immune system development | GO:0002520 | 57 | 0.010 | |
| glycosyl compound catabolic process | GO:1901658 | 112 | 0.010 | |
| regulation of mrna processing | GO:0050684 | 71 | 0.010 | |
| nuclear division | GO:0000280 | 332 | 0.010 | |