| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.511 | |
| negative regulation of rna metabolic process | GO:0051253 | 251 | 0.416 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 267 | 0.257 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.251 | |
| negative regulation of gene expression | GO:0010629 | 387 | 0.220 | |
| negative regulation of biosynthetic process | GO:0009890 | 277 | 0.216 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.185 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 265 | 0.183 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 240 | 0.175 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 240 | 0.168 | |
| cell cycle checkpoint | GO:0000075 | 95 | 0.118 | |
| regulation of cell cycle process | GO:0010564 | 181 | 0.104 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.076 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.076 | |
| negative regulation of transcription dna templated | GO:0045892 | 237 | 0.066 | |
| regulation of gene expression epigenetic | GO:0040029 | 128 | 0.061 | |
| endomembrane system organization | GO:0010256 | 119 | 0.058 | |
| trna transcription from rna polymerase iii promoter | GO:0042797 | 1 | 0.057 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 270 | 0.054 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 261 | 0.051 | |
| positive regulation of transcription dna templated | GO:0045893 | 266 | 0.048 | |
| meiotic nuclear division | GO:0007126 | 151 | 0.048 | |
| positive regulation of cellular component organization | GO:0051130 | 156 | 0.047 | |
| regulation of organelle organization | GO:0033043 | 196 | 0.046 | |
| gene silencing | GO:0016458 | 138 | 0.045 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.045 | |
| regulation of meiosis | GO:0040020 | 3 | 0.044 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.039 | |
| protein localization | GO:0008104 | 284 | 0.037 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.036 | |
| carbohydrate derivative metabolic process | GO:1901135 | 217 | 0.036 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.035 | |
| hatching | GO:0035188 | 4 | 0.035 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.035 | |
| mitotic g2 dna damage checkpoint | GO:0007095 | 69 | 0.033 | |
| meiotic cell cycle | GO:0051321 | 171 | 0.032 | |
| meiotic cell cycle process | GO:1903046 | 132 | 0.031 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 266 | 0.031 | |
| secretion by cell | GO:0032940 | 101 | 0.031 | |
| negative regulation of gene expression epigenetic | GO:0045814 | 77 | 0.031 | |
| establishment of localization in cell | GO:0051649 | 402 | 0.030 | |
| rna processing | GO:0006396 | 147 | 0.029 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.029 | |
| ribonucleoprotein complex assembly | GO:0022618 | 23 | 0.027 | |
| negative regulation of cell cycle phase transition | GO:1901988 | 103 | 0.027 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 174 | 0.027 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 165 | 0.025 | |
| response to other organism | GO:0051707 | 293 | 0.024 | |
| regulation of gene silencing | GO:0060968 | 63 | 0.024 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 204 | 0.023 | |
| organic cyclic compound catabolic process | GO:1901361 | 168 | 0.023 | |
| rna interference | GO:0016246 | 27 | 0.022 | |
| cellular catabolic process | GO:0044248 | 372 | 0.021 | |
| mitotic g2 m transition checkpoint | GO:0044818 | 70 | 0.021 | |
| mrna processing | GO:0006397 | 104 | 0.021 | |
| nuclear division | GO:0000280 | 332 | 0.021 | |
| positive regulation of rna metabolic process | GO:0051254 | 271 | 0.019 | |
| dna metabolic process | GO:0006259 | 227 | 0.019 | |
| regulation of cellular component biogenesis | GO:0044087 | 201 | 0.019 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.019 | |
| regulation of chromatin organization | GO:1902275 | 32 | 0.019 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 119 | 0.018 | |
| heterochromatin organization | GO:0070828 | 25 | 0.018 | |
| small gtpase mediated signal transduction | GO:0007264 | 88 | 0.018 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.018 | |
| nucleobase containing compound catabolic process | GO:0034655 | 165 | 0.018 | |
| cellular response to dna damage stimulus | GO:0006974 | 223 | 0.018 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.017 | |
| gene silencing by rna | GO:0031047 | 57 | 0.017 | |
| defense response | GO:0006952 | 300 | 0.017 | |
| ras protein signal transduction | GO:0007265 | 88 | 0.017 | |
| single organism behavior | GO:0044708 | 391 | 0.017 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.017 | |
| mitotic dna integrity checkpoint | GO:0044774 | 75 | 0.017 | |
| cellular macromolecular complex assembly | GO:0034622 | 153 | 0.017 | |
| rna splicing via transesterification reactions with bulged adenosine as nucleophile | GO:0000377 | 73 | 0.017 | |
| single organism catabolic process | GO:0044712 | 228 | 0.016 | |
| negative regulation of cell cycle | GO:0045786 | 116 | 0.016 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 3 | 0.016 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.016 | |
| organic acid metabolic process | GO:0006082 | 103 | 0.016 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 130 | 0.016 | |
| regulation of rac gtpase activity | GO:0032314 | 1 | 0.015 | |
| endocytosis | GO:0006897 | 310 | 0.015 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.015 | |
| larval development | GO:0002164 | 104 | 0.015 | |
| negative regulation of signal transduction | GO:0009968 | 206 | 0.015 | |
| catabolic process | GO:0009056 | 409 | 0.014 | |
| regulation of intracellular signal transduction | GO:1902531 | 236 | 0.014 | |
| g2 dna damage checkpoint | GO:0031572 | 69 | 0.014 | |
| organelle fission | GO:0048285 | 340 | 0.014 | |
| aromatic compound catabolic process | GO:0019439 | 166 | 0.014 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 28 | 0.014 | |
| heterocycle catabolic process | GO:0046700 | 166 | 0.014 | |
| anterior posterior pattern specification | GO:0009952 | 136 | 0.014 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 152 | 0.014 | |
| single organism membrane organization | GO:0044802 | 93 | 0.014 | |
| regulation of protein modification process | GO:0031399 | 112 | 0.014 | |
| transmembrane receptor protein tyrosine kinase signaling pathway | GO:0007169 | 116 | 0.014 | |
| protein modification process | GO:0036211 | 438 | 0.013 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 120 | 0.013 | |
| negative regulation of mitotic cell cycle | GO:0045930 | 109 | 0.013 | |
| phosphorylation | GO:0016310 | 294 | 0.013 | |
| regulation of mitotic cell cycle | GO:0007346 | 190 | 0.013 | |
| positive regulation of cellular amino acid metabolic process | GO:0045764 | 0 | 0.013 | |
| positive regulation of organelle organization | GO:0010638 | 65 | 0.013 | |
| mitotic cell cycle phase transition | GO:0044772 | 138 | 0.012 | |
| spliceosomal snrnp assembly | GO:0000387 | 2 | 0.012 | |
| secretion | GO:0046903 | 109 | 0.012 | |
| cellular protein localization | GO:0034613 | 160 | 0.012 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 0 | 0.012 | |
| regulation of small gtpase mediated signal transduction | GO:0051056 | 93 | 0.012 | |
| purine containing compound metabolic process | GO:0072521 | 155 | 0.012 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 139 | 0.012 | |
| sister chromatid segregation | GO:0000819 | 92 | 0.012 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 145 | 0.012 | |
| negative regulation of mitotic cell cycle phase transition | GO:1901991 | 103 | 0.012 | |
| organic substance transport | GO:0071702 | 257 | 0.012 | |
| protein methylation | GO:0006479 | 43 | 0.011 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 0 | 0.011 | |
| chromatin remodeling | GO:0006338 | 72 | 0.011 | |
| phagocytosis | GO:0006909 | 215 | 0.011 | |
| ribose phosphate metabolic process | GO:0019693 | 145 | 0.011 | |
| dna damage checkpoint | GO:0000077 | 78 | 0.011 | |
| chromosome segregation | GO:0007059 | 157 | 0.011 | |
| regulation of cell cycle phase transition | GO:1901987 | 130 | 0.011 | |
| purine ribonucleoside catabolic process | GO:0046130 | 112 | 0.011 | |
| cellular ketone metabolic process | GO:0042180 | 24 | 0.010 | |
| regulation of transcription by chromatin organization | GO:0034401 | 3 | 0.010 | |
| nucleoside metabolic process | GO:0009116 | 127 | 0.010 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.010 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.010 | |
| negative regulation of signaling | GO:0023057 | 219 | 0.010 | |
