| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.253 | Yeast |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.174 | |
| protein localization | GO:0008104 | 284 | 0.117 | |
| cellular protein modification process | GO:0006464 | 438 | 0.116 | |
| cellular catabolic process | GO:0044248 | 372 | 0.113 | Yeast |
| modification dependent macromolecule catabolic process | GO:0043632 | 79 | 0.112 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.101 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.095 | |
| wing disc morphogenesis | GO:0007472 | 344 | 0.090 | |
| aromatic compound catabolic process | GO:0019439 | 166 | 0.077 | Yeast |
| defense response | GO:0006952 | 300 | 0.076 | |
| regulation of intracellular signal transduction | GO:1902531 | 236 | 0.075 | |
| protein modification process | GO:0036211 | 438 | 0.073 | |
| organic substance transport | GO:0071702 | 257 | 0.068 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.068 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 266 | 0.068 | |
| central nervous system development | GO:0007417 | 201 | 0.067 | |
| morphogenesis of an epithelium | GO:0002009 | 276 | 0.066 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.063 | |
| regulation of localization | GO:0032879 | 275 | 0.063 | |
| protein modification by small protein conjugation | GO:0032446 | 79 | 0.062 | |
| catabolic process | GO:0009056 | 409 | 0.060 | Yeast |
| regulation of proteolysis | GO:0030162 | 87 | 0.060 | |
| positive regulation of transcription dna templated | GO:0045893 | 266 | 0.059 | |
| regulation of proteasomal protein catabolic process | GO:0061136 | 39 | 0.059 | |
| cellular protein localization | GO:0034613 | 160 | 0.059 | |
| positive regulation of rna metabolic process | GO:0051254 | 271 | 0.055 | |
| intracellular signal transduction | GO:0035556 | 300 | 0.051 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.051 | |
| negative regulation of response to stimulus | GO:0048585 | 258 | 0.050 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.049 | |
| phosphorylation | GO:0016310 | 294 | 0.048 | |
| regulation of cellular protein catabolic process | GO:1903362 | 44 | 0.047 | |
| modification dependent protein catabolic process | GO:0019941 | 78 | 0.047 | |
| single organism catabolic process | GO:0044712 | 228 | 0.045 | |
| protein localization to organelle | GO:0033365 | 82 | 0.045 | |
| negative regulation of signal transduction | GO:0009968 | 206 | 0.044 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 165 | 0.044 | Yeast |
| macromolecule catabolic process | GO:0009057 | 161 | 0.044 | Yeast |
| tube development | GO:0035295 | 244 | 0.043 | |
| proteolysis | GO:0006508 | 192 | 0.043 | |
| cellular macromolecule localization | GO:0070727 | 220 | 0.043 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 240 | 0.042 | |
| response to light stimulus | GO:0009416 | 124 | 0.042 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 78 | 0.041 | |
| establishment or maintenance of cell polarity | GO:0007163 | 167 | 0.040 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.039 | |
| negative regulation of rna metabolic process | GO:0051253 | 251 | 0.039 | |
| homeostatic process | GO:0042592 | 199 | 0.038 | |
| response to biotic stimulus | GO:0009607 | 294 | 0.038 | |
| single organism behavior | GO:0044708 | 391 | 0.038 | |
| regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032434 | 37 | 0.038 | |
| protein catabolic process | GO:0030163 | 101 | 0.038 | |
| negative regulation of signaling | GO:0023057 | 219 | 0.037 | |
| establishment of localization in cell | GO:0051649 | 402 | 0.036 | |
| proteasomal protein catabolic process | GO:0010498 | 59 | 0.035 | |
| response to organic substance | GO:0010033 | 284 | 0.035 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.034 | |
| regulation of proteolysis involved in cellular protein catabolic process | GO:1903050 | 44 | 0.034 | |
| positive regulation of signal transduction | GO:0009967 | 223 | 0.034 | |
| regulation of cell differentiation | GO:0045595 | 302 | 0.033 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.032 | |
| head development | GO:0060322 | 135 | 0.032 | |
| positive regulation of multicellular organismal process | GO:0051240 | 143 | 0.032 | |
| embryonic morphogenesis | GO:0048598 | 206 | 0.031 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 265 | 0.031 | |
| cell cell signaling involved in cell fate commitment | GO:0045168 | 210 | 0.030 | |
| regulation of cellular component biogenesis | GO:0044087 | 201 | 0.030 | |
| nuclear transport | GO:0051169 | 72 | 0.030 | |
| death | GO:0016265 | 284 | 0.029 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 83 | 0.029 | |
| growth | GO:0040007 | 359 | 0.029 | Worm |
| cell motility | GO:0048870 | 251 | 0.028 | |
| mrna metabolic process | GO:0016071 | 124 | 0.028 | |
| lateral inhibition | GO:0046331 | 206 | 0.028 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.028 | |
| phagocytosis | GO:0006909 | 215 | 0.027 | |
| regulation of mapk cascade | GO:0043408 | 92 | 0.026 | |
| regulation of cellular catabolic process | GO:0031329 | 157 | 0.026 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.026 | |
| positive regulation of developmental process | GO:0051094 | 143 | 0.025 | |
| taxis | GO:0042330 | 304 | 0.025 | |
| axon guidance | GO:0007411 | 233 | 0.025 | |
| brain development | GO:0007420 | 120 | 0.024 | |
| regulation of transport | GO:0051049 | 181 | 0.023 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.023 | Mouse |
| negative regulation of rna biosynthetic process | GO:1902679 | 240 | 0.023 | |
| protein complex assembly | GO:0006461 | 200 | 0.022 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 261 | 0.022 | |
| jak stat cascade | GO:0007259 | 49 | 0.022 | |
| regulation of protein catabolic process | GO:0042176 | 55 | 0.022 | |
| negative regulation of cell communication | GO:0010648 | 223 | 0.022 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.022 | |
| multicellular organismal aging | GO:0010259 | 140 | 0.022 | |
| response to endogenous stimulus | GO:0009719 | 119 | 0.022 | |
| organic cyclic compound catabolic process | GO:1901361 | 168 | 0.021 | Yeast |
| regulation of multicellular organismal development | GO:2000026 | 414 | 0.021 | |
| cardiovascular system development | GO:0072358 | 82 | 0.021 | |
| response to other organism | GO:0051707 | 293 | 0.021 | |
| intracellular transport | GO:0046907 | 228 | 0.021 | |
| endocytosis | GO:0006897 | 310 | 0.021 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.021 | Mouse |
| positive regulation of cellular protein metabolic process | GO:0032270 | 118 | 0.020 | |
| regulation of organelle organization | GO:0033043 | 196 | 0.020 | |
| cell division | GO:0051301 | 248 | 0.020 | Mouse |
| purine nucleotide metabolic process | GO:0006163 | 146 | 0.020 | |
| positive regulation of intracellular signal transduction | GO:1902533 | 116 | 0.020 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 204 | 0.020 | |
| mrna processing | GO:0006397 | 104 | 0.019 | |
| neurological system process | GO:0050877 | 358 | 0.019 | |
| immune system process | GO:0002376 | 347 | 0.019 | |
| post embryonic appendage morphogenesis | GO:0035120 | 385 | 0.019 | |
| protein transport | GO:0015031 | 155 | 0.019 | |
| cell proliferation | GO:0008283 | 299 | 0.019 | Mouse |
| circulatory system development | GO:0072359 | 82 | 0.019 | |
| cell adhesion | GO:0007155 | 136 | 0.018 | |
| cytoplasmic transport | GO:0016482 | 130 | 0.018 | |
| protein ubiquitination | GO:0016567 | 70 | 0.018 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.018 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.018 | Mouse |
| regulation of growth | GO:0040008 | 233 | 0.018 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 54 | 0.017 | |
| regulation of cellular localization | GO:0060341 | 136 | 0.017 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.017 | |
| chemotaxis | GO:0006935 | 249 | 0.017 | |
| muscle structure development | GO:0061061 | 224 | 0.016 | |
| nucleobase containing compound catabolic process | GO:0034655 | 165 | 0.016 | Yeast |
| response to radiation | GO:0009314 | 155 | 0.016 | |
| stem cell proliferation | GO:0072089 | 88 | 0.016 | |
| mitotic cell cycle checkpoint | GO:0007093 | 88 | 0.016 | |
| protein phosphorylation | GO:0006468 | 169 | 0.016 | |
| developmental growth | GO:0048589 | 280 | 0.016 | |
| regulation of mrna processing | GO:0050684 | 71 | 0.015 | |
| axonogenesis | GO:0007409 | 290 | 0.015 | |
| intracellular protein transport | GO:0006886 | 104 | 0.015 | |
| nucleotide metabolic process | GO:0009117 | 161 | 0.015 | |
| embryonic development via the syncytial blastoderm | GO:0001700 | 148 | 0.015 | |
| rna processing | GO:0006396 | 147 | 0.015 | |
| regulation of immune effector process | GO:0002697 | 52 | 0.015 | |
| appendage morphogenesis | GO:0035107 | 397 | 0.014 | |
| cellular response to chemical stimulus | GO:0070887 | 199 | 0.014 | |
| enzyme linked receptor protein signaling pathway | GO:0007167 | 179 | 0.014 | |
| positive regulation of protein catabolic process | GO:0045732 | 34 | 0.014 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.014 | Mouse |
| cell death | GO:0008219 | 279 | 0.014 | |
| cell migration | GO:0016477 | 238 | 0.014 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 120 | 0.014 | |
| nitrogen compound transport | GO:0071705 | 85 | 0.014 | |
| wing disc pattern formation | GO:0035222 | 66 | 0.014 | |
| nuclear pore organization | GO:0006999 | 1 | 0.014 | |
| cellular protein catabolic process | GO:0044257 | 83 | 0.014 | |
| dorsal ventral pattern formation | GO:0009953 | 133 | 0.014 | |
| regulation of developmental growth | GO:0048638 | 174 | 0.014 | |
| regulation of cytoplasmic transport | GO:1903649 | 47 | 0.013 | |
| regulation of mitotic cell cycle | GO:0007346 | 190 | 0.013 | |
| nucleoside phosphate catabolic process | GO:1901292 | 110 | 0.013 | |
| tissue morphogenesis | GO:0048729 | 297 | 0.013 | |
| nucleus organization | GO:0006997 | 45 | 0.013 | |
| regulation of establishment of protein localization | GO:0070201 | 61 | 0.013 | |
| mitotic nuclear division | GO:0007067 | 213 | 0.013 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.013 | |
| negative regulation of transcription dna templated | GO:0045892 | 237 | 0.013 | |
| stem cell development | GO:0048864 | 79 | 0.013 | |
| determination of adult lifespan | GO:0008340 | 137 | 0.012 | |
| behavioral response to ethanol | GO:0048149 | 49 | 0.012 | |
| negative regulation of multicellular organismal process | GO:0051241 | 142 | 0.012 | Mouse |
| epithelial cell development | GO:0002064 | 274 | 0.012 | |
| negative regulation of cell cycle | GO:0045786 | 116 | 0.012 | |
| positive regulation of cellular component organization | GO:0051130 | 156 | 0.012 | |
| negative regulation of neuron death | GO:1901215 | 18 | 0.012 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.012 | Mouse |
| regulation of intracellular transport | GO:0032386 | 64 | 0.012 | |
| morphogenesis of embryonic epithelium | GO:0016331 | 94 | 0.012 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.011 | |
| positive regulation of catabolic process | GO:0009896 | 105 | 0.011 | |
| histone deubiquitination | GO:0016578 | 8 | 0.011 | |
| imaginal disc derived appendage morphogenesis | GO:0035114 | 395 | 0.011 | |
| nucleobase containing compound transport | GO:0015931 | 56 | 0.011 | |
| single organism intracellular transport | GO:1902582 | 207 | 0.011 | |
| adult behavior | GO:0030534 | 137 | 0.011 | |
| negative regulation of protein binding | GO:0032091 | 1 | 0.011 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 270 | 0.011 | Mouse |
| regulation of response to stress | GO:0080134 | 200 | 0.011 | |
| positive regulation of cellular component biogenesis | GO:0044089 | 80 | 0.011 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.011 | Yeast |
| regulation of cellular response to stress | GO:0080135 | 89 | 0.011 | |
| negative regulation of phosphatase activity | GO:0010923 | 3 | 0.011 | |
| positive regulation of signaling | GO:0023056 | 243 | 0.010 | |
| regulation of protein localization | GO:0032880 | 76 | 0.010 | |
| response to alcohol | GO:0097305 | 95 | 0.010 | |
| stem cell differentiation | GO:0048863 | 117 | 0.010 | |
| negative regulation of developmental process | GO:0051093 | 201 | 0.010 | |
| mapk cascade | GO:0000165 | 107 | 0.010 | |
| multi organism behavior | GO:0051705 | 175 | 0.010 | |
| covalent chromatin modification | GO:0016569 | 106 | 0.010 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 152 | 0.010 | Worm |
