| ion transmembrane transport | GO:0034220 | 122 | 0.351 | Yeast Rat |
| transmembrane transport | GO:0055085 | 139 | 0.203 | |
| cation transmembrane transport | GO:0098655 | 88 | 0.172 | Yeast |
| inorganic cation transmembrane transport | GO:0098662 | 61 | 0.164 | Yeast |
| metal ion transport | GO:0030001 | 74 | 0.153 | Yeast |
| inorganic ion transmembrane transport | GO:0098660 | 73 | 0.150 | Yeast |
| anion transmembrane transport | GO:0098656 | 26 | 0.110 | Rat |
| cellular response to dna damage stimulus | GO:0006974 | 223 | 0.090 | |
| protein complex assembly | GO:0006461 | 200 | 0.089 | |
| homeostatic process | GO:0042592 | 199 | 0.089 | Yeast |
| regulation of transport | GO:0051049 | 181 | 0.080 | |
| mrna metabolic process | GO:0016071 | 124 | 0.074 | |
| organelle fission | GO:0048285 | 340 | 0.071 | |
| nuclear division | GO:0000280 | 332 | 0.070 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.066 | |
| cation transport | GO:0006812 | 110 | 0.065 | Yeast Rat |
| central nervous system development | GO:0007417 | 201 | 0.062 | |
| negative regulation of developmental process | GO:0051093 | 201 | 0.057 | |
| negative regulation of gene expression | GO:0010629 | 387 | 0.057 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.057 | |
| dna damage checkpoint | GO:0000077 | 78 | 0.056 | |
| dorsal ventral pattern formation | GO:0009953 | 133 | 0.054 | |
| ion transport | GO:0006811 | 145 | 0.054 | Yeast Rat |
| aging | GO:0007568 | 143 | 0.053 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.051 | |
| response to lipopolysaccharide | GO:0032496 | 4 | 0.047 | Rat |
| regulation of translation | GO:0006417 | 56 | 0.047 | |
| single organism intracellular transport | GO:1902582 | 207 | 0.047 | |
| protein complex biogenesis | GO:0070271 | 201 | 0.046 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.044 | |
| intracellular transport | GO:0046907 | 228 | 0.040 | |
| cell cycle checkpoint | GO:0000075 | 95 | 0.040 | |
| negative regulation of cell communication | GO:0010648 | 223 | 0.037 | |
| cellular protein complex assembly | GO:0043623 | 71 | 0.035 | |
| imaginal disc pattern formation | GO:0007447 | 91 | 0.035 | |
| multicellular organismal aging | GO:0010259 | 140 | 0.034 | |
| inorganic anion transmembrane transport | GO:0098661 | 14 | 0.033 | |
| regionalization | GO:0003002 | 416 | 0.032 | |
| negative regulation of multicellular organismal process | GO:0051241 | 142 | 0.030 | |
| monovalent inorganic cation transport | GO:0015672 | 40 | 0.029 | |
| endocytosis | GO:0006897 | 310 | 0.029 | |
| muscle system process | GO:0003012 | 21 | 0.027 | |
| protein transport | GO:0015031 | 155 | 0.027 | |
| regulation of localization | GO:0032879 | 275 | 0.027 | Rat |
| posttranscriptional regulation of gene expression | GO:0010608 | 145 | 0.025 | |
| regulation of cellular localization | GO:0060341 | 136 | 0.025 | |
| centrosome cycle | GO:0007098 | 137 | 0.025 | |
| organelle localization | GO:0051640 | 148 | 0.024 | |
| g2 dna damage checkpoint | GO:0031572 | 69 | 0.023 | |
| body morphogenesis | GO:0010171 | 2 | 0.023 | |
| determination of adult lifespan | GO:0008340 | 137 | 0.023 | |
| forebrain development | GO:0030900 | 2 | 0.023 | |
| regulation of neurogenesis | GO:0050767 | 158 | 0.022 | |
| maintenance of location | GO:0051235 | 73 | 0.022 | |
| translation | GO:0006412 | 69 | 0.022 | |
| establishment of localization in cell | GO:0051649 | 402 | 0.022 | |
| response to copper ion | GO:0046688 | 4 | 0.022 | |
| regulation of cell proliferation | GO:0042127 | 163 | 0.022 | |
| establishment of protein localization | GO:0045184 | 163 | 0.022 | |
| metal ion homeostasis | GO:0055065 | 44 | 0.021 | |
| cell proliferation | GO:0008283 | 299 | 0.021 | |
| cytoplasmic transport | GO:0016482 | 130 | 0.021 | |
| dna integrity checkpoint | GO:0031570 | 81 | 0.020 | |
| developmental growth | GO:0048589 | 280 | 0.020 | |
| positive regulation of signal transduction | GO:0009967 | 223 | 0.020 | |
| cell division | GO:0051301 | 248 | 0.019 | |
| regulation of neuron differentiation | GO:0045664 | 103 | 0.019 | |
| mrna catabolic process | GO:0006402 | 33 | 0.019 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 3 | 0.019 | |
| positive regulation of gliogenesis | GO:0014015 | 5 | 0.018 | |
| response to metal ion | GO:0010038 | 23 | 0.018 | Yeast |
| organic substance transport | GO:0071702 | 257 | 0.018 | Yeast Rat |
| negative regulation of signaling | GO:0023057 | 219 | 0.018 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.018 | |
| dorsal ventral pattern formation imaginal disc | GO:0007450 | 51 | 0.018 | |
| immune response activating signal transduction | GO:0002757 | 2 | 0.018 | |
| spindle organization | GO:0007051 | 253 | 0.018 | |
| gland development | GO:0048732 | 191 | 0.018 | |
| cellular homeostasis | GO:0019725 | 80 | 0.018 | Yeast |
| regulation of cell development | GO:0060284 | 215 | 0.018 | |
| protein import | GO:0017038 | 55 | 0.017 | |
| regulation of cell cycle process | GO:0010564 | 181 | 0.017 | |
| eye development | GO:0001654 | 323 | 0.017 | |
| protein targeting to nucleus | GO:0044744 | 51 | 0.017 | |
| mitotic spindle organization | GO:0007052 | 220 | 0.017 | |
| regulation of synapse structure and activity | GO:0050803 | 128 | 0.017 | |
| regulation of cell differentiation | GO:0045595 | 302 | 0.017 | |
| neurological system process | GO:0050877 | 358 | 0.016 | |
| mitotic g2 m transition checkpoint | GO:0044818 | 70 | 0.015 | |
| membrane organization | GO:0061024 | 112 | 0.015 | Yeast |
| single organism biosynthetic process | GO:0044711 | 206 | 0.015 | |
| single organism behavior | GO:0044708 | 391 | 0.015 | |
| regulation of anatomical structure morphogenesis | GO:0022603 | 242 | 0.015 | |
| protein localization to nucleus | GO:0034504 | 55 | 0.014 | |
| intracellular protein transport | GO:0006886 | 104 | 0.014 | |
| muscle structure development | GO:0061061 | 224 | 0.014 | |
| telencephalon development | GO:0021537 | 2 | 0.014 | |
| negative regulation of nervous system development | GO:0051961 | 92 | 0.014 | |
| organ growth | GO:0035265 | 56 | 0.014 | |
| protein targeting | GO:0006605 | 64 | 0.014 | |
| chaperone mediated protein folding | GO:0061077 | 2 | 0.014 | |
| response to other organism | GO:0051707 | 293 | 0.013 | Rat |
| wing disc pattern formation | GO:0035222 | 66 | 0.013 | |
| negative regulation of signal transduction | GO:0009968 | 206 | 0.013 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.013 | |
| adult behavior | GO:0030534 | 137 | 0.013 | |
| transmembrane receptor protein tyrosine kinase signaling pathway | GO:0007169 | 116 | 0.013 | |
| stem cell differentiation | GO:0048863 | 117 | 0.013 | |
| immune response regulating signaling pathway | GO:0002764 | 2 | 0.013 | |
| regulation of intracellular transport | GO:0032386 | 64 | 0.013 | |
| wing disc morphogenesis | GO:0007472 | 344 | 0.013 | |
| cellular response to molecule of bacterial origin | GO:0071219 | 3 | 0.013 | |
| biological adhesion | GO:0022610 | 138 | 0.013 | |
| cellular ketone metabolic process | GO:0042180 | 24 | 0.013 | |
| growth | GO:0040007 | 359 | 0.013 | |
| larval development | GO:0002164 | 104 | 0.013 | |
| eye morphogenesis | GO:0048592 | 260 | 0.013 | |
| cell cell signaling involved in cell fate commitment | GO:0045168 | 210 | 0.013 | |
| imaginal disc growth | GO:0007446 | 37 | 0.013 | |
| proteolysis | GO:0006508 | 192 | 0.013 | |
| carboxylic acid metabolic process | GO:0019752 | 92 | 0.013 | Yeast |
| positive regulation of multi organism process | GO:0043902 | 40 | 0.012 | |
| compound eye development | GO:0048749 | 307 | 0.012 | |
| regulation of microtubule cytoskeleton organization | GO:0070507 | 41 | 0.012 | |
| cellular macromolecular complex assembly | GO:0034622 | 153 | 0.012 | |
| columnar cuboidal epithelial cell differentiation | GO:0002065 | 256 | 0.012 | |
| regulation of mrna metabolic process | GO:1903311 | 72 | 0.012 | |
| regulation of ion transport | GO:0043269 | 39 | 0.012 | |
| extracellular structure organization | GO:0043062 | 46 | 0.012 | |
| anterior posterior axis specification | GO:0009948 | 109 | 0.012 | |
| appendage morphogenesis | GO:0035107 | 397 | 0.012 | |
| regulation of proteolysis | GO:0030162 | 87 | 0.012 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.011 | |
| amine metabolic process | GO:0009308 | 12 | 0.011 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.011 | |
| regulation of steroid metabolic process | GO:0019218 | 2 | 0.011 | |
| centrosome duplication | GO:0051298 | 121 | 0.011 | |
| single organism nuclear import | GO:1902593 | 51 | 0.011 | |
| response to oxygen levels | GO:0070482 | 59 | 0.011 | |
| notch signaling pathway | GO:0007219 | 120 | 0.011 | |
| post embryonic appendage morphogenesis | GO:0035120 | 385 | 0.011 | |
| negative regulation of smoothened signaling pathway | GO:0045879 | 16 | 0.011 | |
| cellular response to biotic stimulus | GO:0071216 | 4 | 0.011 | |
| lateral inhibition | GO:0046331 | 206 | 0.011 | |
| synaptic vesicle localization | GO:0097479 | 53 | 0.010 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 270 | 0.010 | |
| establishment of protein localization to organelle | GO:0072594 | 62 | 0.010 | |
| mrna processing | GO:0006397 | 104 | 0.010 | |
| negative regulation of response to stimulus | GO:0048585 | 258 | 0.010 | |
| regulation of mitosis | GO:0007088 | 56 | 0.010 | |