| cellular protein modification process | GO:0006464 | 438 | 0.357 | |
| protein modification process | GO:0036211 | 438 | 0.264 | |
| chromosome organization | GO:0051276 | 360 | 0.234 | |
| dna metabolic process | GO:0006259 | 227 | 0.145 | Yeast |
| negative regulation of gene expression | GO:0010629 | 387 | 0.127 | |
| negative regulation of cell cycle process | GO:0010948 | 109 | 0.117 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.113 | Yeast |
| regulation of mitotic cell cycle | GO:0007346 | 190 | 0.109 | |
| negative regulation of mitotic cell cycle | GO:0045930 | 109 | 0.108 | |
| chromatin silencing | GO:0006342 | 76 | 0.107 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.106 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.104 | |
| negative regulation of cell cycle | GO:0045786 | 116 | 0.103 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 270 | 0.100 | |
| regulation of gene expression epigenetic | GO:0040029 | 128 | 0.097 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.094 | |
| establishment of localization in cell | GO:0051649 | 402 | 0.091 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.080 | Worm |
| regulation of cell cycle process | GO:0010564 | 181 | 0.079 | |
| gene silencing | GO:0016458 | 138 | 0.078 | |
| regulation of phosphate metabolic process | GO:0019220 | 210 | 0.076 | |
| negative regulation of biosynthetic process | GO:0009890 | 277 | 0.075 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 267 | 0.072 | |
| organic substance transport | GO:0071702 | 257 | 0.068 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.068 | |
| covalent chromatin modification | GO:0016569 | 106 | 0.061 | |
| negative regulation of response to stimulus | GO:0048585 | 258 | 0.061 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.060 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.060 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 130 | 0.059 | |
| rna localization | GO:0006403 | 115 | 0.055 | |
| chromatin organization | GO:0006325 | 207 | 0.054 | |
| histone modification | GO:0016570 | 106 | 0.050 | |
| regulation of phosphorus metabolic process | GO:0051174 | 210 | 0.049 | |
| cell cycle phase transition | GO:0044770 | 140 | 0.049 | |
| negative regulation of cell communication | GO:0010648 | 223 | 0.048 | |
| regulation of molecular function | GO:0065009 | 217 | 0.048 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.045 | |
| cellular response to dna damage stimulus | GO:0006974 | 223 | 0.045 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 261 | 0.043 | |
| lateral inhibition | GO:0046331 | 206 | 0.042 | |
| organelle fission | GO:0048285 | 340 | 0.040 | |
| cell cycle checkpoint | GO:0000075 | 95 | 0.039 | |
| endocytosis | GO:0006897 | 310 | 0.038 | Worm |
| negative regulation of signaling | GO:0023057 | 219 | 0.038 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.037 | |
| chromatin modification | GO:0016568 | 147 | 0.036 | |
| intracellular transport | GO:0046907 | 228 | 0.035 | |
| negative regulation of signal transduction | GO:0009968 | 206 | 0.034 | |
| negative regulation of mitotic cell cycle phase transition | GO:1901991 | 103 | 0.032 | |
| negative regulation of cell cycle phase transition | GO:1901988 | 103 | 0.032 | |
| nuclear division | GO:0000280 | 332 | 0.031 | |
| protein phosphorylation | GO:0006468 | 169 | 0.031 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.031 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 139 | 0.029 | |
| mitotic cell cycle phase transition | GO:0044772 | 138 | 0.029 | |
| response to heat | GO:0009408 | 63 | 0.029 | |
| cell cell signaling involved in cell fate commitment | GO:0045168 | 210 | 0.028 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 240 | 0.028 | |
| regulation of cell cycle phase transition | GO:1901987 | 130 | 0.027 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.027 | |
| regulation of phosphorylation | GO:0042325 | 147 | 0.027 | |
| mrna transport | GO:0051028 | 15 | 0.026 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.026 | |
| regulation of immune response | GO:0050776 | 118 | 0.025 | |
| positive regulation of signaling | GO:0023056 | 243 | 0.025 | |
| negative regulation of developmental process | GO:0051093 | 201 | 0.025 | |
| negative regulation of transcription dna templated | GO:0045892 | 237 | 0.023 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 145 | 0.023 | |
| rna processing | GO:0006396 | 147 | 0.023 | Yeast |
| regulation of intracellular signal transduction | GO:1902531 | 236 | 0.023 | |
| regulation of small gtpase mediated signal transduction | GO:0051056 | 93 | 0.023 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.023 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 139 | 0.021 | |
| mitotic cell cycle checkpoint | GO:0007093 | 88 | 0.021 | |
| histone methylation | GO:0016571 | 40 | 0.021 | |
| negative regulation of rna metabolic process | GO:0051253 | 251 | 0.020 | |
| regulation of cell development | GO:0060284 | 215 | 0.020 | |
| nuclear transport | GO:0051169 | 72 | 0.020 | |
| mitotic nuclear division | GO:0007067 | 213 | 0.020 | |
| negative regulation of gene expression epigenetic | GO:0045814 | 77 | 0.019 | |
| phosphorylation | GO:0016310 | 294 | 0.019 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 265 | 0.019 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.019 | |
| regulation of protein modification process | GO:0031399 | 112 | 0.019 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 3 | 0.019 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.019 | |
| regulation of organelle organization | GO:0033043 | 196 | 0.018 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.018 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.018 | |
| developmental growth | GO:0048589 | 280 | 0.018 | |
| regulation of multicellular organismal development | GO:2000026 | 414 | 0.018 | |
| programmed cell death | GO:0012501 | 257 | 0.018 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 152 | 0.018 | Worm |
| rna transport | GO:0050658 | 46 | 0.017 | |
| regulation of ras protein signal transduction | GO:0046578 | 93 | 0.017 | |
| response to other organism | GO:0051707 | 293 | 0.017 | |
| positive regulation of rna metabolic process | GO:0051254 | 271 | 0.017 | |
| cellular amino acid metabolic process | GO:0006520 | 61 | 0.016 | |
| cellular response to chemical stimulus | GO:0070887 | 199 | 0.016 | |
| cytoplasmic transport | GO:0016482 | 130 | 0.016 | |
| mitotic g2 m transition checkpoint | GO:0044818 | 70 | 0.016 | |
| regulation of cell death | GO:0010941 | 173 | 0.016 | |
| death | GO:0016265 | 284 | 0.016 | |
| cellular catabolic process | GO:0044248 | 372 | 0.016 | |
| regulation of neurogenesis | GO:0050767 | 158 | 0.016 | |
| regionalization | GO:0003002 | 416 | 0.016 | |
| small gtpase mediated signal transduction | GO:0007264 | 88 | 0.016 | |
| nucleocytoplasmic transport | GO:0006913 | 72 | 0.015 | |
| regulation of response to stress | GO:0080134 | 200 | 0.015 | |
| post embryonic appendage morphogenesis | GO:0035120 | 385 | 0.015 | |
| establishment of rna localization | GO:0051236 | 47 | 0.015 | |
| negative regulation of organelle organization | GO:0010639 | 56 | 0.015 | |
| negative regulation of cellular component organization | GO:0051129 | 108 | 0.015 | |
| mitotic spindle organization | GO:0007052 | 220 | 0.015 | |
| regulation of chromosome organization | GO:0033044 | 64 | 0.015 | |
| regulation of nervous system development | GO:0051960 | 248 | 0.014 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 266 | 0.014 | |
| salivary gland development | GO:0007431 | 162 | 0.014 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.014 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.014 | |
| rho protein signal transduction | GO:0007266 | 14 | 0.013 | |
| regulation of hydrolase activity | GO:0051336 | 97 | 0.013 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.013 | |
| amine metabolic process | GO:0009308 | 12 | 0.013 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.013 | |
| mitotic dna damage checkpoint | GO:0044773 | 74 | 0.013 | |
| single organism biosynthetic process | GO:0044711 | 206 | 0.013 | |
| regulation of cellular amine metabolic process | GO:0033238 | 3 | 0.013 | |
| body morphogenesis | GO:0010171 | 2 | 0.013 | |
| phagocytosis | GO:0006909 | 215 | 0.013 | Worm |
| ras protein signal transduction | GO:0007265 | 88 | 0.012 | |
| response to temperature stimulus | GO:0009266 | 106 | 0.012 | |
| nucleobase containing compound transport | GO:0015931 | 56 | 0.012 | |
| cellular response to organic substance | GO:0071310 | 132 | 0.012 | |
| nuclear export | GO:0051168 | 24 | 0.012 | |
| dna integrity checkpoint | GO:0031570 | 81 | 0.012 | |
| methylation | GO:0032259 | 47 | 0.012 | |
| peptidyl amino acid modification | GO:0018193 | 105 | 0.012 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 106 | 0.012 | |
| response to biotic stimulus | GO:0009607 | 294 | 0.012 | |
| single organism cellular localization | GO:1902580 | 180 | 0.012 | |
| nucleobase containing compound catabolic process | GO:0034655 | 165 | 0.012 | |
| catabolic process | GO:0009056 | 409 | 0.012 | |
| regulation of immune system process | GO:0002682 | 176 | 0.012 | |
| response to external biotic stimulus | GO:0043207 | 293 | 0.012 | |
| regulation of cell differentiation | GO:0045595 | 302 | 0.012 | |
| chaeta development | GO:0022416 | 97 | 0.011 | |
| neurological system process | GO:0050877 | 358 | 0.011 | |
| organelle assembly | GO:0070925 | 198 | 0.011 | |
| positive regulation of transcription dna templated | GO:0045893 | 266 | 0.011 | |
| cellular macromolecule localization | GO:0070727 | 220 | 0.011 | |
| cellular amine metabolic process | GO:0044106 | 12 | 0.011 | |
| defense response | GO:0006952 | 300 | 0.011 | |
| intracellular signal transduction | GO:0035556 | 300 | 0.011 | |
| negative regulation of cell differentiation | GO:0045596 | 143 | 0.011 | |
| mrna metabolic process | GO:0016071 | 124 | 0.011 | Yeast |
| regulation of cellular component biogenesis | GO:0044087 | 201 | 0.011 | |
| nitrogen compound transport | GO:0071705 | 85 | 0.011 | |
| positive regulation of molecular function | GO:0044093 | 136 | 0.011 | |
| heterocycle catabolic process | GO:0046700 | 166 | 0.011 | |
| cell death | GO:0008219 | 279 | 0.011 | |
| cell proliferation | GO:0008283 | 299 | 0.010 | |
| endomembrane system organization | GO:0010256 | 119 | 0.010 | |
| signal transduction by phosphorylation | GO:0023014 | 107 | 0.010 | |
| protein localization | GO:0008104 | 284 | 0.010 | |
| carboxylic acid metabolic process | GO:0019752 | 92 | 0.010 | |
| positive regulation of protein metabolic process | GO:0051247 | 128 | 0.010 | |
| spindle organization | GO:0007051 | 253 | 0.010 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 0 | 0.010 | |
| chromosome segregation | GO:0007059 | 157 | 0.010 | |
