| negative regulation of gene expression | GO:0010629 | 387 | 0.242 | |
| gene silencing | GO:0016458 | 138 | 0.215 | |
| tube morphogenesis | GO:0035239 | 191 | 0.193 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 119 | 0.185 | |
| rna processing | GO:0006396 | 147 | 0.155 | |
| catabolic process | GO:0009056 | 409 | 0.144 | |
| dna conformation change | GO:0071103 | 105 | 0.143 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.135 | |
| cellular protein modification process | GO:0006464 | 438 | 0.130 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 152 | 0.125 | |
| cell proliferation | GO:0008283 | 299 | 0.122 | |
| locomotory behavior | GO:0007626 | 176 | 0.115 | |
| phosphorylation | GO:0016310 | 294 | 0.107 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.106 | |
| tube development | GO:0035295 | 244 | 0.106 | |
| positive regulation of transcription dna templated | GO:0045893 | 266 | 0.104 | |
| response to other organism | GO:0051707 | 293 | 0.103 | |
| tissue morphogenesis | GO:0048729 | 297 | 0.102 | |
| imaginal disc derived appendage development | GO:0048737 | 399 | 0.101 | |
| gene silencing by rna | GO:0031047 | 57 | 0.100 | |
| appendage morphogenesis | GO:0035107 | 397 | 0.097 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 270 | 0.096 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.094 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.094 | |
| circadian rhythm | GO:0007623 | 105 | 0.092 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.091 | |
| negative regulation of rna metabolic process | GO:0051253 | 251 | 0.089 | |
| defense response | GO:0006952 | 300 | 0.088 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.086 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 261 | 0.086 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.082 | |
| regionalization | GO:0003002 | 416 | 0.082 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.081 | |
| protein localization | GO:0008104 | 284 | 0.081 | |
| defense response to other organism | GO:0098542 | 225 | 0.079 | |
| negative regulation of biosynthetic process | GO:0009890 | 277 | 0.076 | |
| single organism biosynthetic process | GO:0044711 | 206 | 0.072 | |
| oxoacid metabolic process | GO:0043436 | 103 | 0.070 | |
| organelle assembly | GO:0070925 | 198 | 0.069 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 267 | 0.066 | |
| endocytosis | GO:0006897 | 310 | 0.065 | |
| protein modification process | GO:0036211 | 438 | 0.061 | |
| mushroom body development | GO:0016319 | 70 | 0.058 | |
| response to organic substance | GO:0010033 | 284 | 0.058 | |
| response to biotic stimulus | GO:0009607 | 294 | 0.057 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.055 | |
| proteolysis | GO:0006508 | 192 | 0.055 | |
| response to external biotic stimulus | GO:0043207 | 293 | 0.055 | |
| cellular macromolecular complex assembly | GO:0034622 | 153 | 0.055 | |
| muscle structure development | GO:0061061 | 224 | 0.055 | |
| morphogenesis of an epithelium | GO:0002009 | 276 | 0.054 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.054 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.053 | |
| negative regulation of gene expression epigenetic | GO:0045814 | 77 | 0.051 | |
| chemotaxis | GO:0006935 | 249 | 0.051 | |
| developmental growth | GO:0048589 | 280 | 0.050 | |
| dna packaging | GO:0006323 | 91 | 0.050 | |
| cellular protein localization | GO:0034613 | 160 | 0.049 | |
| regulation of molecular function | GO:0065009 | 217 | 0.049 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 240 | 0.049 | |
| eye development | GO:0001654 | 323 | 0.047 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.047 | |
| rhythmic process | GO:0048511 | 106 | 0.046 | |
| chromatin modification | GO:0016568 | 147 | 0.046 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 204 | 0.045 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 118 | 0.045 | |
| camera type eye morphogenesis | GO:0048593 | 2 | 0.043 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 265 | 0.042 | |
| response to bacterium | GO:0009617 | 198 | 0.042 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 240 | 0.042 | |
| protein transport | GO:0015031 | 155 | 0.041 | |
| multicellular organism growth | GO:0035264 | 46 | 0.038 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.038 | |
| secretion by cell | GO:0032940 | 101 | 0.037 | |
| cellular macromolecule localization | GO:0070727 | 220 | 0.037 | |
| determination of adult lifespan | GO:0008340 | 137 | 0.036 | |
| eye morphogenesis | GO:0048592 | 260 | 0.036 | |
| chromatin organization | GO:0006325 | 207 | 0.036 | |
| head development | GO:0060322 | 135 | 0.036 | |
| aging | GO:0007568 | 143 | 0.036 | |
| regulation of protein modification process | GO:0031399 | 112 | 0.036 | |
| regulation of gene expression epigenetic | GO:0040029 | 128 | 0.035 | |
| cell motility | GO:0048870 | 251 | 0.034 | |
| negative regulation of transcription dna templated | GO:0045892 | 237 | 0.034 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.034 | |
| regulation of organelle organization | GO:0033043 | 196 | 0.032 | |
| neuron projection guidance | GO:0097485 | 241 | 0.032 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 145 | 0.031 | |
| dna methylation or demethylation | GO:0044728 | 4 | 0.031 | |
| organic acid metabolic process | GO:0006082 | 103 | 0.031 | |
| regulation of multicellular organism growth | GO:0040014 | 40 | 0.030 | |
| multicellular organismal aging | GO:0010259 | 140 | 0.030 | |
| death | GO:0016265 | 284 | 0.030 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.030 | |
| cellular catabolic process | GO:0044248 | 372 | 0.030 | |
| mitotic cell cycle checkpoint | GO:0007093 | 88 | 0.029 | |
| mrna metabolic process | GO:0016071 | 124 | 0.029 | |
| intracellular protein transport | GO:0006886 | 104 | 0.029 | |
| enzyme linked receptor protein signaling pathway | GO:0007167 | 179 | 0.029 | |
| taxis | GO:0042330 | 304 | 0.029 | |
| positive regulation of protein metabolic process | GO:0051247 | 128 | 0.028 | |
| response to oxygen containing compound | GO:1901700 | 200 | 0.028 | |
| peptidyl lysine modification | GO:0018205 | 57 | 0.028 | |
| digestive system development | GO:0055123 | 149 | 0.028 | |
| cellular response to dna damage stimulus | GO:0006974 | 223 | 0.028 | |
| mrna processing | GO:0006397 | 104 | 0.028 | |
| columnar cuboidal epithelial cell development | GO:0002066 | 249 | 0.028 | |
| axon development | GO:0061564 | 297 | 0.028 | |
| wing disc morphogenesis | GO:0007472 | 344 | 0.027 | |
| single organism intracellular transport | GO:1902582 | 207 | 0.027 | |
| immune system process | GO:0002376 | 347 | 0.027 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.027 | |
| regulation of chromosome organization | GO:0033044 | 64 | 0.027 | |
| regulation of catabolic process | GO:0009894 | 170 | 0.027 | |
| regulation of cellular component biogenesis | GO:0044087 | 201 | 0.026 | |
| covalent chromatin modification | GO:0016569 | 106 | 0.026 | |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.026 | |
| meiotic nuclear division | GO:0007126 | 151 | 0.026 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.026 | |
| ncrna metabolic process | GO:0034660 | 43 | 0.026 | |
| positive regulation of developmental process | GO:0051094 | 143 | 0.025 | |
| appendage development | GO:0048736 | 401 | 0.025 | |
| dna metabolic process | GO:0006259 | 227 | 0.025 | |
| protein complex biogenesis | GO:0070271 | 201 | 0.025 | |
| protein complex assembly | GO:0006461 | 200 | 0.025 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 266 | 0.025 | |
| positive regulation of rna metabolic process | GO:0051254 | 271 | 0.025 | |
| response to nitrogen compound | GO:1901698 | 90 | 0.025 | |
| localization of cell | GO:0051674 | 257 | 0.024 | |
| protein catabolic process | GO:0030163 | 101 | 0.024 | |
| protein phosphorylation | GO:0006468 | 169 | 0.024 | |
| protein processing | GO:0016485 | 68 | 0.023 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 54 | 0.023 | |
| photoreceptor cell differentiation | GO:0046530 | 170 | 0.023 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.023 | |
| negative regulation of cell communication | GO:0010648 | 223 | 0.023 | |
| muscle organ development | GO:0007517 | 127 | 0.022 | |
| regulation of anatomical structure morphogenesis | GO:0022603 | 242 | 0.022 | |
| organelle fission | GO:0048285 | 340 | 0.022 | |
| protein maturation | GO:0051604 | 71 | 0.022 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.022 | |
| ncrna processing | GO:0034470 | 30 | 0.022 | |
| camera type eye development | GO:0043010 | 4 | 0.022 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.022 | |
| axon guidance | GO:0007411 | 233 | 0.021 | |
| organic substance transport | GO:0071702 | 257 | 0.021 | |
| cellular amino acid metabolic process | GO:0006520 | 61 | 0.021 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.021 | |
| regulation of proteolysis | GO:0030162 | 87 | 0.021 | |
| body morphogenesis | GO:0010171 | 2 | 0.021 | |
| defense response to gram negative bacterium | GO:0050829 | 94 | 0.021 | |
| ribonucleoprotein complex assembly | GO:0022618 | 23 | 0.021 | |
| double strand break repair | GO:0006302 | 26 | 0.020 | |
| proteasomal protein catabolic process | GO:0010498 | 59 | 0.020 | |
| phagocytosis | GO:0006909 | 215 | 0.020 | |
| imaginal disc derived appendage morphogenesis | GO:0035114 | 395 | 0.020 | |
| morphogenesis of a branching epithelium | GO:0061138 | 45 | 0.020 | |
| mitotic g2 m transition checkpoint | GO:0044818 | 70 | 0.019 | |
| regulation of protein catabolic process | GO:0042176 | 55 | 0.019 | |
| innate immune response | GO:0045087 | 144 | 0.019 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 3 | 0.019 | |
| chromosome organization | GO:0051276 | 360 | 0.019 | |
| cellular response to nitrogen compound | GO:1901699 | 51 | 0.019 | |
| multi organism reproductive behavior | GO:0044705 | 121 | 0.019 | |
| immune response | GO:0006955 | 246 | 0.018 | |
| regulation of phosphate metabolic process | GO:0019220 | 210 | 0.018 | |
| g protein coupled receptor signaling pathway | GO:0007186 | 136 | 0.018 | |
| chromatin remodeling | GO:0006338 | 72 | 0.018 | |
| actin filament based process | GO:0030029 | 220 | 0.018 | |
| posttranscriptional gene silencing by rna | GO:0035194 | 45 | 0.018 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.018 | |
| rna localization | GO:0006403 | 115 | 0.018 | |
| cell cycle checkpoint | GO:0000075 | 95 | 0.018 | |
| axonogenesis | GO:0007409 | 290 | 0.018 | |
| histone modification | GO:0016570 | 106 | 0.018 | |
| response to inorganic substance | GO:0010035 | 44 | 0.018 | |
| chemosensory behavior | GO:0007635 | 106 | 0.018 | |
| long term memory | GO:0007616 | 62 | 0.017 | |
| posttranscriptional gene silencing | GO:0016441 | 46 | 0.017 | |
| columnar cuboidal epithelial cell differentiation | GO:0002065 | 256 | 0.017 | |
| epithelial cell development | GO:0002064 | 274 | 0.017 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.017 | |
| cell death | GO:0008219 | 279 | 0.017 | |
| epithelial tube morphogenesis | GO:0060562 | 88 | 0.017 | |
| negative regulation of cell death | GO:0060548 | 81 | 0.016 | |
| brain development | GO:0007420 | 120 | 0.016 | |
| gland morphogenesis | GO:0022612 | 145 | 0.016 | |
| organic cyclic compound catabolic process | GO:1901361 | 168 | 0.016 | |
| chromatin assembly or disassembly | GO:0006333 | 52 | 0.016 | |
| exocrine system development | GO:0035272 | 162 | 0.016 | |
| gastrulation | GO:0007369 | 70 | 0.016 | |
| embryonic morphogenesis | GO:0048598 | 206 | 0.016 | |
| cell maturation | GO:0048469 | 144 | 0.016 | |
| negative regulation of mitotic cell cycle | GO:0045930 | 109 | 0.015 | |
| central nervous system development | GO:0007417 | 201 | 0.015 | |
| rna splicing via transesterification reactions | GO:0000375 | 73 | 0.015 | |
| phosphatidylinositol 3 kinase signaling | GO:0014065 | 4 | 0.015 | |
| establishment of protein localization | GO:0045184 | 163 | 0.015 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.015 | |
| protein localization to organelle | GO:0033365 | 82 | 0.015 | |
| response to lipopolysaccharide | GO:0032496 | 4 | 0.015 | |
| positive regulation of organelle organization | GO:0010638 | 65 | 0.015 | |
| organophosphate metabolic process | GO:0019637 | 195 | 0.015 | |
| regulation of cellular localization | GO:0060341 | 136 | 0.015 | |
| growth | GO:0040007 | 359 | 0.015 | |
| regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032434 | 37 | 0.015 | |
| secretion | GO:0046903 | 109 | 0.015 | |
| heterochromatin organization | GO:0070828 | 25 | 0.015 | |
| mitotic cell cycle phase transition | GO:0044772 | 138 | 0.015 | |
| positive regulation of molecular function | GO:0044093 | 136 | 0.015 | |
| digestive tract morphogenesis | GO:0048546 | 127 | 0.015 | |
| dorsal ventral pattern formation | GO:0009953 | 133 | 0.014 | |
| single organism behavior | GO:0044708 | 391 | 0.014 | |
| intracellular signal transduction | GO:0035556 | 300 | 0.014 | |
| epithelial cell differentiation | GO:0030855 | 322 | 0.014 | |
| cellular response to oxygen containing compound | GO:1901701 | 79 | 0.014 | |
| positive regulation of protein modification process | GO:0031401 | 58 | 0.014 | |
| apoptotic process | GO:0006915 | 159 | 0.014 | |
| cellular amine metabolic process | GO:0044106 | 12 | 0.014 | |
| homeostatic process | GO:0042592 | 199 | 0.014 | |
| programmed cell death | GO:0012501 | 257 | 0.014 | |
| compound eye morphogenesis | GO:0001745 | 249 | 0.014 | |
| salivary gland development | GO:0007431 | 162 | 0.014 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.014 | |
| carboxylic acid metabolic process | GO:0019752 | 92 | 0.014 | |
| establishment of protein localization to organelle | GO:0072594 | 62 | 0.014 | |
| nucleobase containing compound catabolic process | GO:0034655 | 165 | 0.014 | |
| regulation of localization | GO:0032879 | 275 | 0.014 | |
| modification dependent protein catabolic process | GO:0019941 | 78 | 0.014 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 83 | 0.013 | |
| regulation of proteolysis involved in cellular protein catabolic process | GO:1903050 | 44 | 0.013 | |
| intracellular transport | GO:0046907 | 228 | 0.013 | |
| protein import | GO:0017038 | 55 | 0.013 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 79 | 0.013 | |
| dendrite development | GO:0016358 | 204 | 0.013 | |
| regulation of cell death | GO:0010941 | 173 | 0.013 | |
| cell migration | GO:0016477 | 238 | 0.013 | |
| production of small rna involved in gene silencing by rna | GO:0070918 | 15 | 0.013 | |
| oocyte construction | GO:0007308 | 112 | 0.013 | |
| cellular protein complex assembly | GO:0043623 | 71 | 0.013 | |
| regulation of anatomical structure size | GO:0090066 | 163 | 0.013 | |
| embryonic pattern specification | GO:0009880 | 174 | 0.013 | |
| compound eye photoreceptor cell differentiation | GO:0001751 | 140 | 0.013 | |
| signal transduction by phosphorylation | GO:0023014 | 107 | 0.012 | |
| regulation of cysteine type endopeptidase activity involved in apoptotic process | GO:0043281 | 25 | 0.012 | |
| response to oxidative stress | GO:0006979 | 86 | 0.012 | |
| cellular response to organic substance | GO:0071310 | 132 | 0.012 | |
| organonitrogen compound catabolic process | GO:1901565 | 128 | 0.012 | |
| imaginal disc derived wing morphogenesis | GO:0007476 | 337 | 0.012 | |
| locomotor rhythm | GO:0045475 | 56 | 0.012 | |
| multi organism behavior | GO:0051705 | 175 | 0.012 | |
| positive regulation of apoptotic signaling pathway | GO:2001235 | 4 | 0.012 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 78 | 0.012 | |
| rna 3 end processing | GO:0031123 | 45 | 0.012 | |
| regulation of defense response | GO:0031347 | 102 | 0.012 | |
| cardiovascular system development | GO:0072358 | 82 | 0.012 | |
| positive regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032436 | 19 | 0.012 | |
| peptidyl amino acid modification | GO:0018193 | 105 | 0.012 | |
| methylation | GO:0032259 | 47 | 0.012 | |
| regulation of proteasomal protein catabolic process | GO:0061136 | 39 | 0.012 | |
| protein targeting | GO:0006605 | 64 | 0.012 | |
| response to organonitrogen compound | GO:0010243 | 75 | 0.011 | |
| oocyte axis specification | GO:0007309 | 108 | 0.011 | |
| regulation of programmed cell death | GO:0043067 | 152 | 0.011 | |
| glycerophospholipid metabolic process | GO:0006650 | 23 | 0.011 | |
| digestive tract development | GO:0048565 | 149 | 0.011 | |
| regulation of cellular amine metabolic process | GO:0033238 | 3 | 0.011 | |
| protein targeting to nucleus | GO:0044744 | 51 | 0.011 | |
| axis specification | GO:0009798 | 167 | 0.011 | |
| organophosphate biosynthetic process | GO:0090407 | 46 | 0.011 | |
| pigment cell differentiation | GO:0050931 | 3 | 0.011 | |
| response to organic cyclic compound | GO:0014070 | 89 | 0.011 | |
| sensory organ morphogenesis | GO:0090596 | 260 | 0.011 | |
| positive regulation of signal transduction | GO:0009967 | 223 | 0.011 | |
| nuclear division | GO:0000280 | 332 | 0.011 | |
| salivary gland morphogenesis | GO:0007435 | 145 | 0.011 | |
| positive regulation of growth | GO:0045927 | 75 | 0.011 | |
| reproductive behavior | GO:0019098 | 122 | 0.011 | |
| histone h2a acetylation | GO:0043968 | 1 | 0.011 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 108 | 0.010 | |
| regulation of transport | GO:0051049 | 181 | 0.010 | |
| gene silencing by mirna | GO:0035195 | 22 | 0.010 | |
| cellular component assembly involved in morphogenesis | GO:0010927 | 151 | 0.010 | |
| regulation of mitotic sister chromatid segregation | GO:0033047 | 28 | 0.010 | |
| embryonic development via the syncytial blastoderm | GO:0001700 | 148 | 0.010 | |
| regulation of chromatin modification | GO:1903308 | 28 | 0.010 | |
| rna splicing | GO:0008380 | 83 | 0.010 | |