| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.675 | Fly |
| regulation of cell cycle process | GO:0010564 | 181 | 0.580 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 270 | 0.578 | Fly |
| negative regulation of biosynthetic process | GO:0009890 | 277 | 0.530 | Fly |
| negative regulation of transcription dna templated | GO:0045892 | 237 | 0.411 | |
| regulation of multicellular organismal development | GO:2000026 | 414 | 0.383 | |
| negative regulation of gene expression | GO:0010629 | 387 | 0.369 | Fly |
| negative regulation of rna metabolic process | GO:0051253 | 251 | 0.310 | |
| intracellular signal transduction | GO:0035556 | 300 | 0.273 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 265 | 0.250 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 261 | 0.247 | |
| positive regulation of multicellular organismal process | GO:0051240 | 143 | 0.232 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 240 | 0.210 | |
| positive regulation of developmental process | GO:0051094 | 143 | 0.207 | |
| aromatic compound catabolic process | GO:0019439 | 166 | 0.205 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.196 | |
| regulation of gene expression epigenetic | GO:0040029 | 128 | 0.187 | |
| mrna metabolic process | GO:0016071 | 124 | 0.181 | Fly |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.168 | Fly |
| organic cyclic compound catabolic process | GO:1901361 | 168 | 0.167 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.164 | |
| cellular protein modification process | GO:0006464 | 438 | 0.148 | |
| nucleobase containing compound catabolic process | GO:0034655 | 165 | 0.145 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 240 | 0.141 | |
| developmental growth | GO:0048589 | 280 | 0.139 | Fly |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.133 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 165 | 0.120 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.115 | |
| negative regulation of signal transduction | GO:0009968 | 206 | 0.110 | |
| meiotic cell cycle | GO:0051321 | 171 | 0.107 | |
| negative regulation of developmental process | GO:0051093 | 201 | 0.102 | |
| mrna processing | GO:0006397 | 104 | 0.098 | Fly |
| cellular response to chemical stimulus | GO:0070887 | 199 | 0.097 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 267 | 0.095 | Fly |
| larval development | GO:0002164 | 104 | 0.088 | |
| regulation of mitotic cell cycle | GO:0007346 | 190 | 0.088 | |
| regulation of response to stress | GO:0080134 | 200 | 0.086 | |
| heterocycle catabolic process | GO:0046700 | 166 | 0.084 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.082 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.081 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.073 | |
| cell cycle phase transition | GO:0044770 | 140 | 0.073 | |
| response to nitrogen compound | GO:1901698 | 90 | 0.070 | |
| histone modification | GO:0016570 | 106 | 0.067 | |
| regulation of cell proliferation | GO:0042127 | 163 | 0.066 | |
| single organism intracellular transport | GO:1902582 | 207 | 0.066 | |
| response to endogenous stimulus | GO:0009719 | 119 | 0.064 | |
| response to organic substance | GO:0010033 | 284 | 0.063 | |
| regionalization | GO:0003002 | 416 | 0.061 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.060 | |
| dna metabolic process | GO:0006259 | 227 | 0.059 | |
| regulation of cell cycle phase transition | GO:1901987 | 130 | 0.057 | |
| cellular catabolic process | GO:0044248 | 372 | 0.055 | |
| regulation of localization | GO:0032879 | 275 | 0.054 | |
| protein localization | GO:0008104 | 284 | 0.054 | |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.053 | |
| purine ribonucleoside catabolic process | GO:0046130 | 112 | 0.053 | |
| mitotic spindle organization | GO:0007052 | 220 | 0.052 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.050 | |
| nucleoside phosphate catabolic process | GO:1901292 | 110 | 0.049 | |
| organelle assembly | GO:0070925 | 198 | 0.048 | |
| negative regulation of cell communication | GO:0010648 | 223 | 0.047 | |
| single organism cellular localization | GO:1902580 | 180 | 0.047 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.046 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.044 | |
| positive regulation of cellular component organization | GO:0051130 | 156 | 0.042 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 108 | 0.041 | |
| formation of a compartment boundary | GO:0060288 | 4 | 0.041 | |
| chromosome organization | GO:0051276 | 360 | 0.040 | |
| stem cell differentiation | GO:0048863 | 117 | 0.040 | |
| mitotic cell cycle phase transition | GO:0044772 | 138 | 0.039 | |
| ribonucleotide catabolic process | GO:0009261 | 109 | 0.039 | |
| regulation of cell development | GO:0060284 | 215 | 0.039 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 174 | 0.039 | |
| negative regulation of cell differentiation | GO:0045596 | 143 | 0.038 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.038 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.037 | Fly |
| regulation of mapk cascade | GO:0043408 | 92 | 0.037 | |
| embryonic pattern specification | GO:0009880 | 174 | 0.037 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.037 | |
| cellular macromolecule localization | GO:0070727 | 220 | 0.036 | |
| regulation of molecular function | GO:0065009 | 217 | 0.036 | |
| cell proliferation | GO:0008283 | 299 | 0.036 | Fly |
| cell division | GO:0051301 | 248 | 0.035 | |
| chromatin organization | GO:0006325 | 207 | 0.035 | |
| protein modification process | GO:0036211 | 438 | 0.035 | |
| death | GO:0016265 | 284 | 0.033 | |
| regulation of developmental growth | GO:0048638 | 174 | 0.032 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.032 | Fly |
| central nervous system development | GO:0007417 | 201 | 0.031 | |
| cell motility | GO:0048870 | 251 | 0.031 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 108 | 0.030 | |
| endocytosis | GO:0006897 | 310 | 0.030 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 139 | 0.030 | |
| purine containing compound metabolic process | GO:0072521 | 155 | 0.030 | |
| positive regulation of signaling | GO:0023056 | 243 | 0.029 | |
| organonitrogen compound catabolic process | GO:1901565 | 128 | 0.029 | |
| nucleoside phosphate metabolic process | GO:0006753 | 162 | 0.029 | |
| digestive system development | GO:0055123 | 149 | 0.029 | |
| phosphorylation | GO:0016310 | 294 | 0.028 | |
| stem cell development | GO:0048864 | 79 | 0.028 | |
| intracellular transport | GO:0046907 | 228 | 0.027 | |
| regulation of transport | GO:0051049 | 181 | 0.027 | |
| epithelial cell development | GO:0002064 | 274 | 0.027 | |
| mapk cascade | GO:0000165 | 107 | 0.026 | |
| response to wounding | GO:0009611 | 94 | 0.026 | |
| regulation of programmed cell death | GO:0043067 | 152 | 0.025 | |
| establishment of localization in cell | GO:0051649 | 402 | 0.025 | |
| regulation of protein modification process | GO:0031399 | 112 | 0.024 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.024 | Fly |
| purine ribonucleotide metabolic process | GO:0009150 | 145 | 0.024 | |
| regulation of transmembrane receptor protein serine threonine kinase signaling pathway | GO:0090092 | 38 | 0.024 | |
| nucleotide catabolic process | GO:0009166 | 109 | 0.024 | |
| regulation of cellular response to stress | GO:0080135 | 89 | 0.024 | |
| response to oxygen containing compound | GO:1901700 | 200 | 0.024 | |
| organophosphate metabolic process | GO:0019637 | 195 | 0.023 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 120 | 0.023 | |
| catabolic process | GO:0009056 | 409 | 0.023 | |
| regulation of phosphate metabolic process | GO:0019220 | 210 | 0.023 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.023 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 119 | 0.023 | |
| purine nucleoside catabolic process | GO:0006152 | 112 | 0.022 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 145 | 0.022 | Fly |
| endomembrane system organization | GO:0010256 | 119 | 0.022 | |
| nucleoside catabolic process | GO:0009164 | 112 | 0.022 | |
| cellular response to organic substance | GO:0071310 | 132 | 0.022 | |
| organic substance transport | GO:0071702 | 257 | 0.021 | |
| cellular protein localization | GO:0034613 | 160 | 0.021 | |
| ribonucleotide metabolic process | GO:0009259 | 145 | 0.021 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.020 | |
| macromolecule methylation | GO:0043414 | 45 | 0.020 | |
| regulation of phosphorus metabolic process | GO:0051174 | 210 | 0.020 | |
| ribonucleoprotein complex disassembly | GO:0032988 | 1 | 0.020 | |
| establishment or maintenance of cell polarity | GO:0007163 | 167 | 0.020 | |
| purine nucleoside metabolic process | GO:0042278 | 127 | 0.020 | |
| negative regulation of signaling | GO:0023057 | 219 | 0.020 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.020 | Fly |
| growth | GO:0040007 | 359 | 0.020 | Fly |
| protein transport | GO:0015031 | 155 | 0.020 | |
| ribonucleoside catabolic process | GO:0042454 | 112 | 0.019 | |
| regulation of cell differentiation | GO:0045595 | 302 | 0.019 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 106 | 0.019 | |
| negative regulation of cell cycle | GO:0045786 | 116 | 0.019 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 139 | 0.019 | |
| regulation of organelle organization | GO:0033043 | 196 | 0.019 | |
| body morphogenesis | GO:0010171 | 2 | 0.019 | |
| signal transduction by phosphorylation | GO:0023014 | 107 | 0.019 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 119 | 0.018 | |
| regulation of cellular localization | GO:0060341 | 136 | 0.018 | |
| single organism membrane organization | GO:0044802 | 93 | 0.018 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.018 | |
| regulation of cell death | GO:0010941 | 173 | 0.017 | |
| nucleotide metabolic process | GO:0009117 | 161 | 0.017 | |
| connective tissue development | GO:0061448 | 3 | 0.017 | |
| rna splicing via transesterification reactions | GO:0000375 | 73 | 0.017 | Fly |
| embryo development ending in birth or egg hatching | GO:0009792 | 152 | 0.017 | |
| response to organic cyclic compound | GO:0014070 | 89 | 0.017 | |
| regulation of meiosis | GO:0040020 | 3 | 0.017 | |
| regulation of intracellular signal transduction | GO:1902531 | 236 | 0.016 | |
| cell death | GO:0008219 | 279 | 0.016 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.016 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 54 | 0.016 | |
| protein catabolic process | GO:0030163 | 101 | 0.016 | |
| apoptotic process | GO:0006915 | 159 | 0.016 | |
| establishment of protein localization | GO:0045184 | 163 | 0.016 | |
| regulation of phosphorylation | GO:0042325 | 147 | 0.016 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.016 | |
| purine ribonucleotide catabolic process | GO:0009154 | 109 | 0.016 | |
| purine nucleotide metabolic process | GO:0006163 | 146 | 0.015 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 119 | 0.015 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 204 | 0.015 | |
| segmentation | GO:0035282 | 207 | 0.015 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 130 | 0.015 | |
| purine ribonucleoside metabolic process | GO:0046128 | 127 | 0.015 | |
| organophosphate catabolic process | GO:0046434 | 112 | 0.015 | |
| protein complex biogenesis | GO:0070271 | 201 | 0.014 | |
| proteolysis | GO:0006508 | 192 | 0.014 | |
| negative regulation of response to stimulus | GO:0048585 | 258 | 0.014 | |
| blastoderm segmentation | GO:0007350 | 159 | 0.014 | |
| organelle localization | GO:0051640 | 148 | 0.014 | |
| cellular response to endogenous stimulus | GO:0071495 | 80 | 0.014 | |
| programmed cell death | GO:0012501 | 257 | 0.014 | |
| tissue migration | GO:0090130 | 155 | 0.014 | |
| regulation of response to external stimulus | GO:0032101 | 115 | 0.014 | |
| regulation of multi organism process | GO:0043900 | 131 | 0.014 | |
| spindle organization | GO:0007051 | 253 | 0.013 | |
| protein targeting | GO:0006605 | 64 | 0.013 | |
| positive regulation of rna metabolic process | GO:0051254 | 271 | 0.013 | |
| negative regulation of cell cycle process | GO:0010948 | 109 | 0.013 | |
| carbohydrate derivative catabolic process | GO:1901136 | 118 | 0.013 | |
| positive regulation of cell differentiation | GO:0045597 | 64 | 0.013 | |
| cellular amino acid metabolic process | GO:0006520 | 61 | 0.013 | |
| regulation of protein localization | GO:0032880 | 76 | 0.013 | |
| positive regulation of transcription dna templated | GO:0045893 | 266 | 0.013 | |
| purine nucleotide catabolic process | GO:0006195 | 109 | 0.013 | |
| dorsal ventral pattern formation | GO:0009953 | 133 | 0.013 | |
| photoreceptor cell differentiation | GO:0046530 | 170 | 0.012 | |
| protein phosphorylation | GO:0006468 | 169 | 0.012 | |
| intracellular protein transport | GO:0006886 | 104 | 0.012 | |
| organelle fission | GO:0048285 | 340 | 0.012 | |
| small gtpase mediated signal transduction | GO:0007264 | 88 | 0.012 | |
| organ growth | GO:0035265 | 56 | 0.012 | Fly |
| nitrogen compound transport | GO:0071705 | 85 | 0.012 | |
| oxoacid metabolic process | GO:0043436 | 103 | 0.012 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 266 | 0.012 | |
| cellular macromolecular complex assembly | GO:0034622 | 153 | 0.012 | |
| negative regulation of mitotic cell cycle | GO:0045930 | 109 | 0.012 | |
| positive regulation of transcription from rna polymerase i promoter | GO:0045943 | 3 | 0.011 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.011 | |
| cell migration | GO:0016477 | 238 | 0.011 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.011 | |
| single organism catabolic process | GO:0044712 | 228 | 0.011 | |
| male gamete generation | GO:0048232 | 201 | 0.011 | |
| mrna catabolic process | GO:0006402 | 33 | 0.011 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 3 | 0.011 | |
| nucleoside metabolic process | GO:0009116 | 127 | 0.011 | |
| reproductive structure development | GO:0048608 | 74 | 0.011 | |
| rna catabolic process | GO:0006401 | 37 | 0.011 | |
| negative regulation of intrinsic apoptotic signaling pathway | GO:2001243 | 1 | 0.011 | |
| negative regulation of transcription factor import into nucleus | GO:0042992 | 4 | 0.010 | |
| regulation of cellular amine metabolic process | GO:0033238 | 3 | 0.010 | |
| axis specification | GO:0009798 | 167 | 0.010 | |
| regulation of cell division | GO:0051302 | 72 | 0.010 | |
| columnar cuboidal epithelial cell development | GO:0002066 | 249 | 0.010 | |
| methylation | GO:0032259 | 47 | 0.010 | |
