| protein complex assembly | GO:0006461 | 200 | 0.235 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.226 | Human |
| endosomal transport | GO:0016197 | 44 | 0.193 | Human |
| macromolecular complex assembly | GO:0065003 | 256 | 0.151 | |
| establishment of localization in cell | GO:0051649 | 402 | 0.140 | Human |
| endocytosis | GO:0006897 | 310 | 0.114 | Human |
| meiotic cytokinesis | GO:0033206 | 33 | 0.114 | |
| intracellular transport | GO:0046907 | 228 | 0.107 | Human |
| single organism intracellular transport | GO:1902582 | 207 | 0.096 | Human |
| regulation of cell morphogenesis | GO:0022604 | 163 | 0.091 | |
| endosomal vesicle fusion | GO:0034058 | 4 | 0.073 | |
| protein complex biogenesis | GO:0070271 | 201 | 0.069 | |
| cellular protein localization | GO:0034613 | 160 | 0.064 | Human |
| regulation of localization | GO:0032879 | 275 | 0.062 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.061 | |
| secretion | GO:0046903 | 109 | 0.058 | |
| single organism membrane organization | GO:0044802 | 93 | 0.057 | |
| growth | GO:0040007 | 359 | 0.056 | |
| regulation of endocytosis | GO:0030100 | 37 | 0.052 | |
| intracellular signal transduction | GO:0035556 | 300 | 0.051 | |
| developmental growth | GO:0048589 | 280 | 0.045 | |
| organic substance transport | GO:0071702 | 257 | 0.043 | Human |
| regulation of anatomical structure morphogenesis | GO:0022603 | 242 | 0.042 | |
| protein k48 linked ubiquitination | GO:0070936 | 3 | 0.041 | |
| columnar cuboidal epithelial cell development | GO:0002066 | 249 | 0.041 | |
| regulation of transport | GO:0051049 | 181 | 0.040 | |
| cellular response to nutrient levels | GO:0031669 | 62 | 0.040 | |
| regulation of vesicle mediated transport | GO:0060627 | 59 | 0.038 | |
| cell projection assembly | GO:0030031 | 94 | 0.038 | |
| ras protein signal transduction | GO:0007265 | 88 | 0.037 | |
| cytoskeleton dependent cytokinesis | GO:0061640 | 81 | 0.037 | |
| muscle structure development | GO:0061061 | 224 | 0.037 | |
| organelle membrane fusion | GO:0090174 | 16 | 0.037 | |
| establishment of protein localization | GO:0045184 | 163 | 0.036 | Human |
| membrane organization | GO:0061024 | 112 | 0.035 | |
| positive regulation of transport | GO:0051050 | 92 | 0.035 | |
| columnar cuboidal epithelial cell differentiation | GO:0002065 | 256 | 0.035 | |
| cell cell signaling involved in cell fate commitment | GO:0045168 | 210 | 0.035 | |
| epithelial cell development | GO:0002064 | 274 | 0.034 | |
| small gtpase mediated signal transduction | GO:0007264 | 88 | 0.034 | |
| cellular macromolecule localization | GO:0070727 | 220 | 0.034 | Human |
| arp2 3 complex mediated actin nucleation | GO:0034314 | 3 | 0.032 | |
| single organism membrane fusion | GO:0044801 | 42 | 0.032 | |
| negative regulation of signaling | GO:0023057 | 219 | 0.031 | Human |
| very long chain fatty acid catabolic process | GO:0042760 | 2 | 0.031 | |
| programmed cell death | GO:0012501 | 257 | 0.031 | |
| regulation of establishment of protein localization | GO:0070201 | 61 | 0.031 | |
| regulation of anatomical structure size | GO:0090066 | 163 | 0.031 | |
| cellular catabolic process | GO:0044248 | 372 | 0.030 | |
| response to biotic stimulus | GO:0009607 | 294 | 0.029 | |
| regulation of multicellular organismal development | GO:2000026 | 414 | 0.029 | |
| neuromuscular synaptic transmission | GO:0007274 | 67 | 0.028 | |
| positive regulation of synapse assembly | GO:0051965 | 29 | 0.028 | |
| establishment or maintenance of cell polarity | GO:0007163 | 167 | 0.028 | |
| cytoplasmic transport | GO:0016482 | 130 | 0.028 | |
| regulation of cell projection organization | GO:0031344 | 92 | 0.027 | |
| response to external biotic stimulus | GO:0043207 | 293 | 0.027 | |
| cellular response to starvation | GO:0009267 | 61 | 0.026 | |
| organelle fission | GO:0048285 | 340 | 0.026 | |
| lateral inhibition | GO:0046331 | 206 | 0.026 | |
| catabolic process | GO:0009056 | 409 | 0.026 | |
| salivary gland morphogenesis | GO:0007435 | 145 | 0.025 | |
| cellular response to external stimulus | GO:0071496 | 66 | 0.025 | |
| modification dependent protein catabolic process | GO:0019941 | 78 | 0.024 | |
| actin filament based process | GO:0030029 | 220 | 0.023 | |
| protein transport | GO:0015031 | 155 | 0.023 | Human |
| positive regulation of cell communication | GO:0010647 | 250 | 0.023 | |
| ovarian follicle cell development | GO:0030707 | 248 | 0.023 | |
| cell death | GO:0008219 | 279 | 0.023 | |
| positive regulation of signaling | GO:0023056 | 243 | 0.023 | |
| positive regulation of cellular component organization | GO:0051130 | 156 | 0.023 | |
| autophagy | GO:0006914 | 108 | 0.023 | |
| response to other organism | GO:0051707 | 293 | 0.023 | |
| actin filament polymerization | GO:0030041 | 27 | 0.023 | |
| cognition | GO:0050890 | 141 | 0.022 | |
| phagocytosis | GO:0006909 | 215 | 0.022 | |
| cellular response to extracellular stimulus | GO:0031668 | 64 | 0.022 | |
| compound eye development | GO:0048749 | 307 | 0.021 | |
| regulation of multi organism process | GO:0043900 | 131 | 0.020 | |
| autophagic vacuole assembly | GO:0000045 | 2 | 0.019 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.019 | |
| regulation of cell shape | GO:0008360 | 113 | 0.018 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.018 | |
| regulation of actin filament polymerization | GO:0030833 | 25 | 0.018 | |
| protein polymerization | GO:0051258 | 42 | 0.017 | |
| synaptic transmission | GO:0007268 | 288 | 0.017 | |
| membrane fusion | GO:0061025 | 42 | 0.016 | |
| regulation of cellular component biogenesis | GO:0044087 | 201 | 0.016 | |
| regulation of intracellular signal transduction | GO:1902531 | 236 | 0.016 | |
| gland development | GO:0048732 | 191 | 0.016 | |
| regulation of catabolic process | GO:0009894 | 170 | 0.016 | |
| imaginal disc derived wing morphogenesis | GO:0007476 | 337 | 0.016 | |
| neurological system process | GO:0050877 | 358 | 0.016 | |
| positive regulation of endocytosis | GO:0045807 | 22 | 0.016 | |
| regulation of cellular component size | GO:0032535 | 98 | 0.016 | |
| regulation of secretion | GO:0051046 | 44 | 0.016 | |
| cell migration | GO:0016477 | 238 | 0.016 | |
| positive regulation of signal transduction | GO:0009967 | 223 | 0.015 | |
| regulation of ras protein signal transduction | GO:0046578 | 93 | 0.015 | |
| compound eye morphogenesis | GO:0001745 | 249 | 0.015 | |
| dorsal ventral pattern formation | GO:0009953 | 133 | 0.014 | |
| defense response to other organism | GO:0098542 | 225 | 0.014 | |
| positive regulation of multicellular organismal process | GO:0051240 | 143 | 0.014 | |
| skeletal muscle fiber development | GO:0048741 | 3 | 0.014 | |
| regulation of nervous system development | GO:0051960 | 248 | 0.014 | |
| protein complex disassembly | GO:0043241 | 36 | 0.014 | |
| regulation of protein transport | GO:0051223 | 57 | 0.014 | |
| eye development | GO:0001654 | 323 | 0.013 | |
| establishment or maintenance of bipolar cell polarity | GO:0061245 | 34 | 0.013 | |
| tissue death | GO:0016271 | 102 | 0.013 | |
| cytokinesis | GO:0000910 | 90 | 0.013 | |
| sensory organ morphogenesis | GO:0090596 | 260 | 0.013 | |
| cellular protein complex assembly | GO:0043623 | 71 | 0.013 | |
| regulation of protein complex assembly | GO:0043254 | 42 | 0.013 | |
| protein geranylgeranylation | GO:0018344 | 3 | 0.012 | |
| retrograde transport endosome to golgi | GO:0042147 | 3 | 0.012 | Human |
| apoptotic process | GO:0006915 | 159 | 0.012 | |
| muscle cell differentiation | GO:0042692 | 103 | 0.012 | |
| regulation of small gtpase mediated signal transduction | GO:0051056 | 93 | 0.012 | |
| positive regulation of synaptic growth at neuromuscular junction | GO:0045887 | 26 | 0.012 | |
| regulation of response to stress | GO:0080134 | 200 | 0.012 | |
| positive regulation of cell projection organization | GO:0031346 | 29 | 0.012 | |
| regulation of secretion by cell | GO:1903530 | 39 | 0.012 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.012 | |
| golgi vesicle transport | GO:0048193 | 27 | 0.012 | |
| developmental programmed cell death | GO:0010623 | 138 | 0.012 | |
| regulation of defense response | GO:0031347 | 102 | 0.012 | |
| regulation of immune response | GO:0050776 | 118 | 0.012 | |
| organelle fusion | GO:0048284 | 46 | 0.012 | |
| protein catabolic process | GO:0030163 | 101 | 0.012 | |
| establishment of vesicle localization | GO:0051650 | 51 | 0.011 | |
| secretion by cell | GO:0032940 | 101 | 0.011 | |
| localization of cell | GO:0051674 | 257 | 0.011 | |
| appendage morphogenesis | GO:0035107 | 397 | 0.011 | |
| protein heterooligomerization | GO:0051291 | 4 | 0.011 | |
| regulation of response to biotic stimulus | GO:0002831 | 63 | 0.011 | |
| regulation of protein localization | GO:0032880 | 76 | 0.011 | |
| gland morphogenesis | GO:0022612 | 145 | 0.011 | |
| regulation of response to external stimulus | GO:0032101 | 115 | 0.011 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 139 | 0.011 | |
| axonogenesis | GO:0007409 | 290 | 0.011 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.011 | |
| histolysis | GO:0007559 | 102 | 0.011 | |
| stem cell differentiation | GO:0048863 | 117 | 0.010 | |
| wing disc morphogenesis | GO:0007472 | 344 | 0.010 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.010 | |
| cell division | GO:0051301 | 248 | 0.010 | |
| regionalization | GO:0003002 | 416 | 0.010 | |
| cellular protein modification process | GO:0006464 | 438 | 0.010 | |
| single organism membrane budding | GO:1902591 | 2 | 0.010 | |
| signal transduction by phosphorylation | GO:0023014 | 107 | 0.010 | |
| positive regulation of developmental process | GO:0051094 | 143 | 0.010 | |
| protein modification process | GO:0036211 | 438 | 0.010 | |
| negative regulation of phosphatase activity | GO:0010923 | 3 | 0.010 | |
| cellular component assembly involved in morphogenesis | GO:0010927 | 151 | 0.010 | |