| nuclear rna surveillance | GO:0071027 | 3 | 0.226 | |
| chromosome organization | GO:0051276 | 360 | 0.136 | |
| cellular catabolic process | GO:0044248 | 372 | 0.092 | |
| chromatin organization | GO:0006325 | 207 | 0.081 | |
| cellular protein modification process | GO:0006464 | 438 | 0.079 | |
| response to external biotic stimulus | GO:0043207 | 293 | 0.077 | |
| protein modification process | GO:0036211 | 438 | 0.074 | |
| rna processing | GO:0006396 | 147 | 0.071 | |
| rrna processing | GO:0006364 | 3 | 0.067 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.067 | |
| heterocycle catabolic process | GO:0046700 | 166 | 0.061 | |
| response to biotic stimulus | GO:0009607 | 294 | 0.059 | |
| cellular macromolecule localization | GO:0070727 | 220 | 0.059 | |
| death | GO:0016265 | 284 | 0.058 | |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.054 | |
| homeostatic process | GO:0042592 | 199 | 0.051 | |
| programmed cell death | GO:0012501 | 257 | 0.050 | |
| covalent chromatin modification | GO:0016569 | 106 | 0.049 | |
| methylation | GO:0032259 | 47 | 0.048 | |
| organic substance transport | GO:0071702 | 257 | 0.047 | |
| ncrna metabolic process | GO:0034660 | 43 | 0.046 | |
| response to other organism | GO:0051707 | 293 | 0.045 | |
| ncrna 3 end processing | GO:0043628 | 17 | 0.045 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.044 | |
| nucleocytoplasmic transport | GO:0006913 | 72 | 0.042 | |
| defense response | GO:0006952 | 300 | 0.041 | |
| catabolic process | GO:0009056 | 409 | 0.040 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.039 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.038 | |
| aromatic compound catabolic process | GO:0019439 | 166 | 0.037 | |
| cellular component assembly involved in morphogenesis | GO:0010927 | 151 | 0.037 | |
| cellular protein localization | GO:0034613 | 160 | 0.037 | |
| trna modification | GO:0006400 | 2 | 0.037 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 165 | 0.036 | |
| mrna transport | GO:0051028 | 15 | 0.035 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.035 | |
| rna catabolic process | GO:0006401 | 37 | 0.035 | |
| organelle assembly | GO:0070925 | 198 | 0.033 | |
| negative regulation of mitotic cell cycle | GO:0045930 | 109 | 0.032 | |
| organic cyclic compound catabolic process | GO:1901361 | 168 | 0.032 | |
| ncrna processing | GO:0034470 | 30 | 0.031 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 130 | 0.031 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.030 | |
| imaginal disc derived appendage development | GO:0048737 | 399 | 0.030 | |
| cell death | GO:0008219 | 279 | 0.029 | |
| histone modification | GO:0016570 | 106 | 0.029 | |
| regulation of molecular function | GO:0065009 | 217 | 0.028 | |
| mrna metabolic process | GO:0016071 | 124 | 0.028 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.027 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.027 | |
| actin cytoskeleton organization | GO:0030036 | 206 | 0.027 | |
| establishment of localization in cell | GO:0051649 | 402 | 0.027 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 145 | 0.027 | |
| regulation of cell death | GO:0010941 | 173 | 0.026 | |
| endocytosis | GO:0006897 | 310 | 0.026 | |
| single organism intracellular transport | GO:1902582 | 207 | 0.025 | |
| macromolecule methylation | GO:0043414 | 45 | 0.025 | |
| regulation of mitotic cell cycle | GO:0007346 | 190 | 0.025 | |
| protein phosphorylation | GO:0006468 | 169 | 0.025 | |
| localization of cell | GO:0051674 | 257 | 0.025 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.025 | |
| positive regulation of catabolic process | GO:0009896 | 105 | 0.025 | |
| cell migration | GO:0016477 | 238 | 0.024 | |
| immune system process | GO:0002376 | 347 | 0.023 | |
| actin filament based process | GO:0030029 | 220 | 0.023 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.023 | |
| rna methylation | GO:0001510 | 2 | 0.022 | |
| defense response to other organism | GO:0098542 | 225 | 0.022 | |
| positive regulation of catalytic activity | GO:0043085 | 118 | 0.022 | |
| cell motility | GO:0048870 | 251 | 0.022 | |
| phagocytosis | GO:0006909 | 215 | 0.022 | |
| dna metabolic process | GO:0006259 | 227 | 0.022 | |
| nucleobase containing compound catabolic process | GO:0034655 | 165 | 0.021 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.021 | |
| rna localization | GO:0006403 | 115 | 0.021 | |
| nitrogen compound transport | GO:0071705 | 85 | 0.020 | |
| negative regulation of cell communication | GO:0010648 | 223 | 0.020 | |
| peptidyl amino acid modification | GO:0018193 | 105 | 0.020 | |
| rna 3 end processing | GO:0031123 | 45 | 0.020 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.019 | |
| nucleoside phosphate metabolic process | GO:0006753 | 162 | 0.019 | |
| nucleobase containing compound transport | GO:0015931 | 56 | 0.019 | |
| negative regulation of signal transduction | GO:0009968 | 206 | 0.019 | |
| striated muscle cell development | GO:0055002 | 50 | 0.019 | |
| protein localization | GO:0008104 | 284 | 0.019 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.018 | |
| protein alkylation | GO:0008213 | 43 | 0.018 | |
| wing disc morphogenesis | GO:0007472 | 344 | 0.018 | |
| negative regulation of response to stimulus | GO:0048585 | 258 | 0.018 | |
| regulation of response to stress | GO:0080134 | 200 | 0.017 | |
| immune response | GO:0006955 | 246 | 0.017 | |
| histone methylation | GO:0016571 | 40 | 0.017 | |
| cytoplasmic transport | GO:0016482 | 130 | 0.017 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 266 | 0.017 | |
| cellular macromolecular complex assembly | GO:0034622 | 153 | 0.017 | |
| immune effector process | GO:0002252 | 98 | 0.016 | |
| positive regulation of transcription dna templated | GO:0045893 | 266 | 0.016 | |
| hematopoietic or lymphoid organ development | GO:0048534 | 57 | 0.016 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 270 | 0.016 | |
| defense response to virus | GO:0051607 | 23 | 0.016 | |
| tissue morphogenesis | GO:0048729 | 297 | 0.016 | |
| regulation of cell cycle phase transition | GO:1901987 | 130 | 0.016 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.015 | |
| regulation of catabolic process | GO:0009894 | 170 | 0.015 | |
| cell cycle checkpoint | GO:0000075 | 95 | 0.015 | |
| negative regulation of rna metabolic process | GO:0051253 | 251 | 0.015 | |
| innate immune response | GO:0045087 | 144 | 0.015 | |
| regulation of immune response | GO:0050776 | 118 | 0.015 | |
| rna phosphodiester bond hydrolysis | GO:0090501 | 17 | 0.015 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.015 | |
| regionalization | GO:0003002 | 416 | 0.015 | |
| mrna catabolic process | GO:0006402 | 33 | 0.015 | |
| actin filament organization | GO:0007015 | 126 | 0.014 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 152 | 0.014 | |
| cell cycle phase transition | GO:0044770 | 140 | 0.014 | |
| tube formation | GO:0035148 | 21 | 0.014 | |
| intracellular transport | GO:0046907 | 228 | 0.014 | |
| sensory organ morphogenesis | GO:0090596 | 260 | 0.014 | |
| phosphorylation | GO:0016310 | 294 | 0.014 | |
| respiratory system development | GO:0060541 | 213 | 0.014 | |
| appendage morphogenesis | GO:0035107 | 397 | 0.013 | |
| mrna processing | GO:0006397 | 104 | 0.013 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 174 | 0.013 | |
| polyadenylation dependent rna catabolic process | GO:0043633 | 1 | 0.013 | |
| regulation of cell development | GO:0060284 | 215 | 0.013 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.013 | |
| tube morphogenesis | GO:0035239 | 191 | 0.013 | |
| rna transport | GO:0050658 | 46 | 0.013 | |
| regulation of multicellular organismal development | GO:2000026 | 414 | 0.013 | |
| nucleoside phosphate catabolic process | GO:1901292 | 110 | 0.013 | |
| establishment of rna localization | GO:0051236 | 47 | 0.013 | |
| rna phosphodiester bond hydrolysis exonucleolytic | GO:0090503 | 4 | 0.012 | |
| regulation of defense response | GO:0031347 | 102 | 0.012 | |
| protein methylation | GO:0006479 | 43 | 0.012 | |
| regulation of phosphate metabolic process | GO:0019220 | 210 | 0.012 | |
| negative regulation of cell cycle process | GO:0010948 | 109 | 0.012 | |
| positive regulation of molecular function | GO:0044093 | 136 | 0.012 | |
| secretion | GO:0046903 | 109 | 0.012 | |
| hemopoiesis | GO:0030097 | 46 | 0.012 | |
| regulation of hydrolase activity | GO:0051336 | 97 | 0.012 | |
| negative regulation of endopeptidase activity | GO:0010951 | 11 | 0.012 | |
| muscle cell differentiation | GO:0042692 | 103 | 0.012 | |
| response to bacterium | GO:0009617 | 198 | 0.012 | |
| regulation of phosphorus metabolic process | GO:0051174 | 210 | 0.011 | |
| negative regulation of apoptotic process | GO:0043066 | 63 | 0.011 | |
| nuclear transport | GO:0051169 | 72 | 0.011 | |
| rna splicing via transesterification reactions | GO:0000375 | 73 | 0.011 | |
| nuclear transcribed mrna catabolic process | GO:0000956 | 24 | 0.011 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.011 | |
| neurological system process | GO:0050877 | 358 | 0.011 | |
| single organism biosynthetic process | GO:0044711 | 206 | 0.011 | |
| cellular amino acid metabolic process | GO:0006520 | 61 | 0.011 | |
| regulation of protein modification process | GO:0031399 | 112 | 0.011 | |
| positive regulation of rna metabolic process | GO:0051254 | 271 | 0.011 | |
| gland development | GO:0048732 | 191 | 0.011 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.011 | |
| positive regulation of cellular component organization | GO:0051130 | 156 | 0.011 | |
| response to virus | GO:0009615 | 28 | 0.011 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 139 | 0.011 | |
| establishment of protein localization | GO:0045184 | 163 | 0.011 | |
| chromatin modification | GO:0016568 | 147 | 0.011 | |
| trna processing | GO:0008033 | 3 | 0.011 | |
| appendage development | GO:0048736 | 401 | 0.010 | |
| negative regulation of programmed cell death | GO:0043069 | 72 | 0.010 | |
| regulation of apoptotic process | GO:0042981 | 130 | 0.010 | |
| body morphogenesis | GO:0010171 | 2 | 0.010 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.010 | |
| organophosphate metabolic process | GO:0019637 | 195 | 0.010 | |
| organelle localization | GO:0051640 | 148 | 0.010 | |
| polyadenylation dependent ncrna catabolic process | GO:0043634 | 1 | 0.010 | |
| protein complex biogenesis | GO:0070271 | 201 | 0.010 | |
| spindle organization | GO:0007051 | 253 | 0.010 | |
| embryonic development via the syncytial blastoderm | GO:0001700 | 148 | 0.010 | |
| nuclear export | GO:0051168 | 24 | 0.010 | |
| negative regulation of cell differentiation | GO:0045596 | 143 | 0.010 | |
| embryonic pattern specification | GO:0009880 | 174 | 0.010 | |
| striated muscle myosin thick filament assembly | GO:0071688 | 3 | 0.010 | |
