| negative regulation of biosynthetic process | GO:0009890 | 277 | 0.131 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.116 | |
| cellular protein modification process | GO:0006464 | 438 | 0.103 | |
| protein modification process | GO:0036211 | 438 | 0.101 | |
| regulation of phosphorylation | GO:0042325 | 147 | 0.089 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.088 | |
| cellular catabolic process | GO:0044248 | 372 | 0.086 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.085 | |
| cellular macromolecule localization | GO:0070727 | 220 | 0.080 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.078 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 267 | 0.078 | |
| single organism intracellular transport | GO:1902582 | 207 | 0.076 | |
| regulation of phosphorus metabolic process | GO:0051174 | 210 | 0.076 | |
| establishment of localization in cell | GO:0051649 | 402 | 0.074 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 240 | 0.065 | |
| catabolic process | GO:0009056 | 409 | 0.064 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.062 | |
| establishment of protein localization | GO:0045184 | 163 | 0.062 | |
| regulation of phosphate metabolic process | GO:0019220 | 210 | 0.060 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 261 | 0.059 | |
| cell proliferation | GO:0008283 | 299 | 0.057 | |
| phosphorylation | GO:0016310 | 294 | 0.055 | |
| cytoplasmic transport | GO:0016482 | 130 | 0.053 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.053 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.052 | |
| embryonic development via the syncytial blastoderm | GO:0001700 | 148 | 0.052 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.051 | |
| positive regulation of cellular component organization | GO:0051130 | 156 | 0.050 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.050 | |
| regulation of multicellular organismal development | GO:2000026 | 414 | 0.048 | |
| actin filament based process | GO:0030029 | 220 | 0.048 | |
| organic acid metabolic process | GO:0006082 | 103 | 0.047 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 240 | 0.046 | |
| positive regulation of signaling | GO:0023056 | 243 | 0.044 | |
| protein transport | GO:0015031 | 155 | 0.044 | |
| intracellular protein transport | GO:0006886 | 104 | 0.042 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.042 | |
| organic substance transport | GO:0071702 | 257 | 0.042 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 165 | 0.041 | |
| single organism cellular localization | GO:1902580 | 180 | 0.040 | |
| intracellular transport | GO:0046907 | 228 | 0.040 | |
| intracellular signal transduction | GO:0035556 | 300 | 0.039 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.039 | |
| regulation of molecular function | GO:0065009 | 217 | 0.039 | |
| mapk cascade | GO:0000165 | 107 | 0.038 | |
| regulation of cell differentiation | GO:0045595 | 302 | 0.038 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 270 | 0.036 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.036 | |
| developmental pigmentation | GO:0048066 | 68 | 0.036 | |
| peptidyl amino acid modification | GO:0018193 | 105 | 0.035 | |
| signal transduction by phosphorylation | GO:0023014 | 107 | 0.034 | |
| positive regulation of transport | GO:0051050 | 92 | 0.033 | |
| response to organic substance | GO:0010033 | 284 | 0.033 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.032 | |
| oxoacid metabolic process | GO:0043436 | 103 | 0.031 | |
| protein localization | GO:0008104 | 284 | 0.031 | |
| cellular response to chemical stimulus | GO:0070887 | 199 | 0.030 | |
| carboxylic acid metabolic process | GO:0019752 | 92 | 0.030 | |
| negative regulation of transcription dna templated | GO:0045892 | 237 | 0.030 | |
| regulation of intracellular signal transduction | GO:1902531 | 236 | 0.030 | |
| positive regulation of signal transduction | GO:0009967 | 223 | 0.029 | |
| chromosome organization | GO:0051276 | 360 | 0.029 | |
| regulation of nervous system development | GO:0051960 | 248 | 0.029 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.029 | |
| organelle assembly | GO:0070925 | 198 | 0.029 | |
| regulation of localization | GO:0032879 | 275 | 0.029 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.028 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.028 | |
| protein localization to organelle | GO:0033365 | 82 | 0.028 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.028 | |
| pigment metabolic process | GO:0042440 | 84 | 0.027 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.027 | |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.027 | |
| regulation of cellular response to stress | GO:0080135 | 89 | 0.027 | |
| localization of cell | GO:0051674 | 257 | 0.027 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.027 | |
| regulation of cell morphogenesis involved in differentiation | GO:0010769 | 61 | 0.026 | |
| proteolysis | GO:0006508 | 192 | 0.026 | |
| negative regulation of response to stimulus | GO:0048585 | 258 | 0.026 | |
| regulation of cellular component biogenesis | GO:0044087 | 201 | 0.026 | |
| protein complex assembly | GO:0006461 | 200 | 0.025 | |
| cellular protein localization | GO:0034613 | 160 | 0.025 | |
| regulation of mapk cascade | GO:0043408 | 92 | 0.024 | |
| single organism biosynthetic process | GO:0044711 | 206 | 0.024 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.024 | |
| nucleobase containing compound catabolic process | GO:0034655 | 165 | 0.024 | |
| response to nitrogen compound | GO:1901698 | 90 | 0.024 | |
| regulation of neuron projection development | GO:0010975 | 69 | 0.024 | |
| pigmentation | GO:0043473 | 75 | 0.023 | |
| response to other organism | GO:0051707 | 293 | 0.023 | |
| protein complex biogenesis | GO:0070271 | 201 | 0.023 | |
| pigment biosynthetic process | GO:0046148 | 36 | 0.023 | |
| transmembrane receptor protein tyrosine kinase signaling pathway | GO:0007169 | 116 | 0.022 | |
| regulation of cell development | GO:0060284 | 215 | 0.022 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.022 | |
| homeostatic process | GO:0042592 | 199 | 0.022 | |
| regulation of transport | GO:0051049 | 181 | 0.022 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 265 | 0.022 | |
| regulation of response to stress | GO:0080134 | 200 | 0.022 | |
| phagocytosis | GO:0006909 | 215 | 0.021 | |
| cell migration | GO:0016477 | 238 | 0.021 | |
| actin cytoskeleton organization | GO:0030036 | 206 | 0.021 | |
| cell motility | GO:0048870 | 251 | 0.021 | |
| cellular amino acid metabolic process | GO:0006520 | 61 | 0.020 | |
| regulation of cell projection organization | GO:0031344 | 92 | 0.020 | |
| cell division | GO:0051301 | 248 | 0.020 | |
| positive regulation of molecular function | GO:0044093 | 136 | 0.020 | |
| regulation of organelle organization | GO:0033043 | 196 | 0.019 | |
| negative regulation of signal transduction | GO:0009968 | 206 | 0.019 | |
| positive regulation of transcription dna templated | GO:0045893 | 266 | 0.019 | |
| negative regulation of gene expression | GO:0010629 | 387 | 0.019 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 3 | 0.019 | |
| cellular amine metabolic process | GO:0044106 | 12 | 0.019 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 0 | 0.019 | |
| negative regulation of rna metabolic process | GO:0051253 | 251 | 0.019 | |
| death | GO:0016265 | 284 | 0.018 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.018 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 139 | 0.018 | |
| organic cyclic compound catabolic process | GO:1901361 | 168 | 0.018 | |
| endomembrane system organization | GO:0010256 | 119 | 0.017 | |
| regulation of transferase activity | GO:0051338 | 58 | 0.017 | |
| enzyme linked receptor protein signaling pathway | GO:0007167 | 179 | 0.017 | |
| regulation of protein modification process | GO:0031399 | 112 | 0.017 | |
| protein phosphorylation | GO:0006468 | 169 | 0.017 | |
| nucleoside phosphate metabolic process | GO:0006753 | 162 | 0.017 | |
| regulation of anatomical structure morphogenesis | GO:0022603 | 242 | 0.017 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 266 | 0.017 | |
| endocytosis | GO:0006897 | 310 | 0.017 | |
| heterocycle catabolic process | GO:0046700 | 166 | 0.017 | |
| cellular response to dna damage stimulus | GO:0006974 | 223 | 0.017 | |
| regulation of cellular localization | GO:0060341 | 136 | 0.016 | |
| developmental maturation | GO:0021700 | 172 | 0.016 | |
| positive regulation of protein metabolic process | GO:0051247 | 128 | 0.016 | |
| maintenance of location | GO:0051235 | 73 | 0.016 | |
| negative regulation of cell death | GO:0060548 | 81 | 0.016 | |
| regulation of protein phosphorylation | GO:0001932 | 64 | 0.016 | |
| negative regulation of signaling | GO:0023057 | 219 | 0.016 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.016 | |
| response to endogenous stimulus | GO:0009719 | 119 | 0.016 | |
| positive regulation of proteolysis involved in cellular protein catabolic process | GO:1903052 | 24 | 0.016 | |
| regulation of cell death | GO:0010941 | 173 | 0.016 | |
| regulation of programmed cell death | GO:0043067 | 152 | 0.016 | |
| dendrite development | GO:0016358 | 204 | 0.015 | |
| regulation of neurogenesis | GO:0050767 | 158 | 0.015 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.015 | |
| cell death | GO:0008219 | 279 | 0.015 | |
| protein catabolic process | GO:0030163 | 101 | 0.015 | |
| positive regulation of developmental process | GO:0051094 | 143 | 0.015 | |
| positive regulation of intracellular signal transduction | GO:1902533 | 116 | 0.015 | |
| meiotic nuclear division | GO:0007126 | 151 | 0.015 | |
| dendrite morphogenesis | GO:0048813 | 199 | 0.015 | |
| regulation of cellular component movement | GO:0051270 | 42 | 0.014 | |
| protein ubiquitination | GO:0016567 | 70 | 0.014 | |
| positive regulation of cellular component biogenesis | GO:0044089 | 80 | 0.014 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.014 | |
| regulation of cellular amine metabolic process | GO:0033238 | 3 | 0.014 | |
| positive regulation of catalytic activity | GO:0043085 | 118 | 0.014 | |
| negative regulation of cell communication | GO:0010648 | 223 | 0.014 | |
| peptidyl threonine phosphorylation | GO:0018107 | 2 | 0.014 | |
| spermatogenesis | GO:0007283 | 200 | 0.014 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.013 | |
| cellular ketone metabolic process | GO:0042180 | 24 | 0.013 | |
| secondary metabolic process | GO:0019748 | 75 | 0.013 | |
| establishment or maintenance of cell polarity | GO:0007163 | 167 | 0.013 | |
| spermatid differentiation | GO:0048515 | 114 | 0.013 | |
| aromatic compound catabolic process | GO:0019439 | 166 | 0.013 | |
| negative regulation of phosphate metabolic process | GO:0045936 | 45 | 0.013 | |
| embryonic morphogenesis | GO:0048598 | 206 | 0.013 | |
| nucleotide catabolic process | GO:0009166 | 109 | 0.013 | |
| morphogenesis of an epithelium | GO:0002009 | 276 | 0.013 | |
| eye pigment biosynthetic process | GO:0006726 | 32 | 0.013 | |
| eye development | GO:0001654 | 323 | 0.013 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 0 | 0.013 | |
| cellular response to organic substance | GO:0071310 | 132 | 0.012 | |
| response to organic cyclic compound | GO:0014070 | 89 | 0.012 | |
| protein localization to nucleus | GO:0034504 | 55 | 0.012 | |
| negative regulation of erk1 and erk2 cascade | GO:0070373 | 3 | 0.012 | |
| protein targeting | GO:0006605 | 64 | 0.012 | |
| regulation of developmental growth | GO:0048638 | 174 | 0.012 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 145 | 0.012 | |
| wing disc morphogenesis | GO:0007472 | 344 | 0.012 | |
| carbohydrate derivative metabolic process | GO:1901135 | 217 | 0.012 | |
| ras protein signal transduction | GO:0007265 | 88 | 0.012 | |
| golgi vesicle transport | GO:0048193 | 27 | 0.012 | |
| purine nucleoside metabolic process | GO:0042278 | 127 | 0.012 | |
| dna metabolic process | GO:0006259 | 227 | 0.012 | |
| golgi organization | GO:0007030 | 66 | 0.012 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.012 | |
| meiotic cell cycle process | GO:1903046 | 132 | 0.012 | |
| organophosphate metabolic process | GO:0019637 | 195 | 0.012 | |
| appendage morphogenesis | GO:0035107 | 397 | 0.011 | |
| regulation of dendrite morphogenesis | GO:0048814 | 28 | 0.011 | |
| regulation of stress activated mapk cascade | GO:0032872 | 41 | 0.011 | |
| negative regulation of phosphorus metabolic process | GO:0010563 | 45 | 0.011 | |
| amine metabolic process | GO:0009308 | 12 | 0.011 | |
| carbohydrate metabolic process | GO:0005975 | 82 | 0.011 | |
| purine ribonucleotide catabolic process | GO:0009154 | 109 | 0.011 | |
| nuclear division | GO:0000280 | 332 | 0.011 | |
| positive regulation of phosphorylation | GO:0042327 | 87 | 0.011 | |
| microtubule organizing center organization | GO:0031023 | 168 | 0.011 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 108 | 0.011 | |
| regulation of cellular catabolic process | GO:0031329 | 157 | 0.011 | |
| muscle organ development | GO:0007517 | 127 | 0.011 | |
| apoptotic process | GO:0006915 | 159 | 0.011 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 139 | 0.011 | |
| response to alcohol | GO:0097305 | 95 | 0.011 | |
| small gtpase mediated signal transduction | GO:0007264 | 88 | 0.011 | |
| purine ribonucleoside catabolic process | GO:0046130 | 112 | 0.011 | |
| post embryonic appendage morphogenesis | GO:0035120 | 385 | 0.011 | |
| ion transport | GO:0006811 | 145 | 0.010 | |
| eye pigment metabolic process | GO:0042441 | 33 | 0.010 | |
| camera type eye development | GO:0043010 | 4 | 0.010 | |
| negative regulation of developmental process | GO:0051093 | 201 | 0.010 | |
| extrinsic apoptotic signaling pathway | GO:0097191 | 1 | 0.010 | |
| cellular homeostasis | GO:0019725 | 80 | 0.010 | |
| pigment metabolic process involved in developmental pigmentation | GO:0043324 | 33 | 0.010 | |
| regulation of cell morphogenesis | GO:0022604 | 163 | 0.010 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 118 | 0.010 | |
