| epithelial cell differentiation | GO:0030855 | 322 | 0.613 | |
| protein catabolic process | GO:0030163 | 101 | 0.559 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.462 | |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.374 | Mouse |
| regulation of catabolic process | GO:0009894 | 170 | 0.351 | |
| organelle fission | GO:0048285 | 340 | 0.318 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 106 | 0.277 | Human |
| protein ubiquitination | GO:0016567 | 70 | 0.233 | Human |
| histone modification | GO:0016570 | 106 | 0.227 | Human |
| ubiquitin dependent protein catabolic process | GO:0006511 | 78 | 0.208 | Mouse |
| body morphogenesis | GO:0010171 | 2 | 0.201 | |
| cellular amino acid metabolic process | GO:0006520 | 61 | 0.183 | |
| cell cycle phase transition | GO:0044770 | 140 | 0.176 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 3 | 0.174 | |
| positive regulation of catabolic process | GO:0009896 | 105 | 0.169 | |
| regulation of cell cycle process | GO:0010564 | 181 | 0.162 | |
| histone acetylation | GO:0016573 | 38 | 0.162 | |
| regulation of cellular amine metabolic process | GO:0033238 | 3 | 0.155 | |
| single organism cellular localization | GO:1902580 | 180 | 0.150 | |
| regulation of protein catabolic process | GO:0042176 | 55 | 0.140 | |
| columnar cuboidal epithelial cell differentiation | GO:0002065 | 256 | 0.138 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.133 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 83 | 0.129 | Mouse |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.124 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 0 | 0.121 | |
| posttranscriptional gene silencing by rna | GO:0035194 | 45 | 0.116 | |
| male gamete generation | GO:0048232 | 201 | 0.115 | |
| covalent chromatin modification | GO:0016569 | 106 | 0.107 | Human |
| regulation of cell cycle phase transition | GO:1901987 | 130 | 0.107 | |
| rna transport | GO:0050658 | 46 | 0.106 | |
| mitotic dna damage checkpoint | GO:0044773 | 74 | 0.104 | |
| cellular protein modification process | GO:0006464 | 438 | 0.096 | Human |
| mrna metabolic process | GO:0016071 | 124 | 0.094 | |
| growth | GO:0040007 | 359 | 0.093 | |
| protein complex biogenesis | GO:0070271 | 201 | 0.087 | |
| positive regulation of protein metabolic process | GO:0051247 | 128 | 0.082 | |
| carboxylic acid metabolic process | GO:0019752 | 92 | 0.081 | |
| protein complex assembly | GO:0006461 | 200 | 0.077 | |
| spermatid differentiation | GO:0048515 | 114 | 0.074 | |
| cell proliferation | GO:0008283 | 299 | 0.074 | Mouse |
| chromatin remodeling | GO:0006338 | 72 | 0.072 | |
| nuclear transcribed mrna catabolic process deadenylation dependent decay | GO:0000288 | 14 | 0.071 | |
| amine metabolic process | GO:0009308 | 12 | 0.070 | |
| proteolysis | GO:0006508 | 192 | 0.069 | Mouse |
| transmembrane receptor protein serine threonine kinase signaling pathway | GO:0007178 | 65 | 0.067 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.060 | |
| nucleobase containing compound transport | GO:0015931 | 56 | 0.060 | |
| posttranscriptional gene silencing | GO:0016441 | 46 | 0.059 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.058 | |
| mrna catabolic process | GO:0006402 | 33 | 0.057 | |
| regulation of cell morphogenesis | GO:0022604 | 163 | 0.056 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 204 | 0.055 | |
| modification dependent protein catabolic process | GO:0019941 | 78 | 0.053 | Mouse |
| posttranscriptional regulation of gene expression | GO:0010608 | 145 | 0.052 | |
| positive regulation of protein catabolic process | GO:0045732 | 34 | 0.052 | |
| spermatid development | GO:0007286 | 98 | 0.049 | |
| cellular macromolecular complex assembly | GO:0034622 | 153 | 0.046 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 118 | 0.045 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.045 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 79 | 0.044 | Mouse |
| cellular amine metabolic process | GO:0044106 | 12 | 0.044 | |
| chromosome organization | GO:0051276 | 360 | 0.044 | Human |
| regulation of cell shape | GO:0008360 | 113 | 0.043 | |
| catabolic process | GO:0009056 | 409 | 0.043 | |
| protein modification process | GO:0036211 | 438 | 0.042 | Human |
| ovarian follicle cell development | GO:0030707 | 248 | 0.041 | |
| regionalization | GO:0003002 | 416 | 0.040 | |
| rna localization | GO:0006403 | 115 | 0.040 | |
| cellular protein complex assembly | GO:0043623 | 71 | 0.040 | |
| protein modification by small protein conjugation | GO:0032446 | 79 | 0.038 | Human |
| embryo development ending in birth or egg hatching | GO:0009792 | 152 | 0.037 | |
| negative regulation of response to stimulus | GO:0048585 | 258 | 0.036 | |
| columnar cuboidal epithelial cell development | GO:0002066 | 249 | 0.036 | |
| regulation of mitotic cell cycle | GO:0007346 | 190 | 0.036 | |
| positive regulation of signal transduction | GO:0009967 | 223 | 0.036 | |
| organic acid metabolic process | GO:0006082 | 103 | 0.035 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.034 | |
| cellular ketone metabolic process | GO:0042180 | 24 | 0.034 | |
| regulation of growth | GO:0040008 | 233 | 0.033 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 266 | 0.032 | |
| establishment of rna localization | GO:0051236 | 47 | 0.032 | |
| spermatogenesis | GO:0007283 | 200 | 0.032 | |
| dna templated transcription initiation | GO:0006352 | 25 | 0.031 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.031 | |
| oxoacid metabolic process | GO:0043436 | 103 | 0.030 | |
| negative regulation of mitotic cell cycle | GO:0045930 | 109 | 0.029 | |
| chaeta development | GO:0022416 | 97 | 0.029 | |
| regulation of organelle organization | GO:0033043 | 196 | 0.027 | |
| positive regulation of cellular catabolic process | GO:0031331 | 95 | 0.027 | |
| peptidyl amino acid modification | GO:0018193 | 105 | 0.027 | |
| ribonucleoprotein complex biogenesis | GO:0022613 | 31 | 0.027 | |
| aging | GO:0007568 | 143 | 0.026 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.026 | |
| protein targeting to nucleus | GO:0044744 | 51 | 0.025 | |
| organic substance transport | GO:0071702 | 257 | 0.025 | |
| single organism intracellular transport | GO:1902582 | 207 | 0.024 | |
| regulation of cell development | GO:0060284 | 215 | 0.024 | |
| gene silencing by rna | GO:0031047 | 57 | 0.024 | |
| regulation of cellular catabolic process | GO:0031329 | 157 | 0.023 | |
| proteasomal protein catabolic process | GO:0010498 | 59 | 0.023 | Mouse |
| gliogenesis | GO:0042063 | 80 | 0.022 | |
| regulation of nervous system development | GO:0051960 | 248 | 0.022 | |
| cellular cation homeostasis | GO:0030003 | 38 | 0.022 | |
| peptidyl threonine phosphorylation | GO:0018107 | 2 | 0.022 | |
| regulation of intracellular signal transduction | GO:1902531 | 236 | 0.022 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 0 | 0.022 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.021 | |
| heterocycle catabolic process | GO:0046700 | 166 | 0.021 | |
| nucleobase containing compound catabolic process | GO:0034655 | 165 | 0.021 | |
| positive regulation of signaling | GO:0023056 | 243 | 0.021 | |
| protein acetylation | GO:0006473 | 39 | 0.021 | |
| nuclear transcribed mrna catabolic process | GO:0000956 | 24 | 0.021 | |
| transcription initiation from rna polymerase ii promoter | GO:0006367 | 25 | 0.020 | |
| nucleocytoplasmic transport | GO:0006913 | 72 | 0.020 | |
| imaginal disc pattern formation | GO:0007447 | 91 | 0.020 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.020 | |
| histone h2a acetylation | GO:0043968 | 1 | 0.020 | |
| rna interference | GO:0016246 | 27 | 0.020 | |
| mitotic nuclear division | GO:0007067 | 213 | 0.020 | |
| cell growth | GO:0016049 | 108 | 0.020 | |
| response to external biotic stimulus | GO:0043207 | 293 | 0.020 | |
| regulation of protein complex assembly | GO:0043254 | 42 | 0.019 | |
| wnt signaling pathway | GO:0016055 | 98 | 0.019 | |
| reproductive structure development | GO:0048608 | 74 | 0.018 | |
| single organism biosynthetic process | GO:0044711 | 206 | 0.018 | |
| anterior posterior axis specification | GO:0009948 | 109 | 0.018 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.018 | |
| protein localization to organelle | GO:0033365 | 82 | 0.018 | |
| regulation of translation | GO:0006417 | 56 | 0.018 | |
| translation | GO:0006412 | 69 | 0.018 | |
| cytoplasmic transport | GO:0016482 | 130 | 0.017 | |
| regulation of protein modification process | GO:0031399 | 112 | 0.017 | |
| g protein coupled receptor signaling pathway | GO:0007186 | 136 | 0.017 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.017 | |
| regulation of proteolysis | GO:0030162 | 87 | 0.017 | |
| stem cell differentiation | GO:0048863 | 117 | 0.017 | Mouse |
| meiotic cell cycle | GO:0051321 | 171 | 0.017 | |
| nuclear export | GO:0051168 | 24 | 0.017 | |
| adherens junction organization | GO:0034332 | 27 | 0.017 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.016 | |
| cellular catabolic process | GO:0044248 | 372 | 0.016 | Mouse |
| positive regulation of cellular component organization | GO:0051130 | 156 | 0.016 | |
| cell fate determination | GO:0001709 | 91 | 0.016 | |
| negative regulation of growth | GO:0045926 | 84 | 0.016 | |
| regulation of cellular component biogenesis | GO:0044087 | 201 | 0.016 | |
| response to hypoxia | GO:0001666 | 53 | 0.016 | |
| positive regulation of cellular amino acid metabolic process | GO:0045764 | 0 | 0.016 | |
| autophagic cell death | GO:0048102 | 83 | 0.015 | |
| response to lipopolysaccharide | GO:0032496 | 4 | 0.015 | |
| protein modification by small protein removal | GO:0070646 | 28 | 0.015 | |
| response to radiation | GO:0009314 | 155 | 0.015 | Human |
| positive regulation of proteolysis | GO:0045862 | 52 | 0.015 | |
| regulation of wnt signaling pathway | GO:0030111 | 68 | 0.015 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.015 | |
| regulation of hydrolase activity | GO:0051336 | 97 | 0.015 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.014 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.014 | |
| regulation of mrna 3 end processing | GO:0031440 | 7 | 0.014 | |
| sex differentiation | GO:0007548 | 81 | 0.014 | |
| organelle inheritance | GO:0048308 | 2 | 0.014 | |
| negative regulation of developmental process | GO:0051093 | 201 | 0.013 | Mouse |
| endocytosis | GO:0006897 | 310 | 0.013 | |
| purine ribonucleotide catabolic process | GO:0009154 | 109 | 0.013 | |
| protein localization to nucleus | GO:0034504 | 55 | 0.013 | |
| nucleic acid transport | GO:0050657 | 46 | 0.013 | |
| cellular protein catabolic process | GO:0044257 | 83 | 0.013 | Mouse |
| positive regulation of hydrolase activity | GO:0051345 | 78 | 0.013 | |
| regulation of protein phosphorylation | GO:0001932 | 64 | 0.013 | |
| hematopoietic progenitor cell differentiation | GO:0002244 | 1 | 0.013 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.013 | |
| larval development | GO:0002164 | 104 | 0.013 | |
| protein localization | GO:0008104 | 284 | 0.012 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.012 | |
| regulation of notch signaling pathway | GO:0008593 | 100 | 0.012 | |
| rna catabolic process | GO:0006401 | 37 | 0.012 | |
| positive regulation of protein modification process | GO:0031401 | 58 | 0.012 | |
| wound healing | GO:0042060 | 75 | 0.012 | |
| regulation of neurogenesis | GO:0050767 | 158 | 0.012 | |
| compound eye development | GO:0048749 | 307 | 0.012 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.012 | |
| defense response to other organism | GO:0098542 | 225 | 0.011 | |
| jak stat cascade | GO:0007259 | 49 | 0.011 | |
| protein transport | GO:0015031 | 155 | 0.011 | |
| nephron epithelium development | GO:0072009 | 3 | 0.011 | |
| response to other organism | GO:0051707 | 293 | 0.011 | |
| protein dna complex assembly | GO:0065004 | 63 | 0.011 | |
| protein import into nucleus | GO:0006606 | 51 | 0.011 | |
| rna processing | GO:0006396 | 147 | 0.011 | |
| chromatin modification | GO:0016568 | 147 | 0.011 | Human |
| regulation of cellular protein catabolic process | GO:1903362 | 44 | 0.011 | |
| eggshell chorion gene amplification | GO:0007307 | 9 | 0.010 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 130 | 0.010 | |
| formation of a compartment boundary | GO:0060288 | 4 | 0.010 | |
| meiotic nuclear division | GO:0007126 | 151 | 0.010 | |
| dsrna fragmentation | GO:0031050 | 15 | 0.010 | |
| phosphorylation | GO:0016310 | 294 | 0.010 | |
| phagocytosis | GO:0006909 | 215 | 0.010 | |
| mitotic cell cycle phase transition | GO:0044772 | 138 | 0.010 | |
| internal peptidyl lysine acetylation | GO:0018393 | 38 | 0.010 | |