| rrna processing | GO:0006364 | 3 | 0.521 | Yeast |
| rna processing | GO:0006396 | 147 | 0.462 | Yeast |
| ribosomal large subunit biogenesis | GO:0042273 | 1 | 0.277 | |
| ncrna metabolic process | GO:0034660 | 43 | 0.200 | Yeast |
| ribonucleoprotein complex biogenesis | GO:0022613 | 31 | 0.161 | Yeast Zebrafish |
| snrna metabolic process | GO:0016073 | 14 | 0.083 | |
| larval development | GO:0002164 | 104 | 0.077 | Worm |
| endocytosis | GO:0006897 | 310 | 0.075 | |
| regulation of mrna metabolic process | GO:1903311 | 72 | 0.065 | |
| regulation of mrna splicing via spliceosome | GO:0048024 | 64 | 0.063 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.059 | |
| ncrna processing | GO:0034470 | 30 | 0.057 | Yeast |
| regulation of rna splicing | GO:0043484 | 69 | 0.057 | |
| rna splicing via transesterification reactions with bulged adenosine as nucleophile | GO:0000377 | 73 | 0.052 | |
| regulation of mrna processing | GO:0050684 | 71 | 0.051 | |
| mrna metabolic process | GO:0016071 | 124 | 0.050 | |
| regulation of cell development | GO:0060284 | 215 | 0.049 | |
| organelle assembly | GO:0070925 | 198 | 0.048 | Zebrafish |
| ribosome biogenesis | GO:0042254 | 8 | 0.048 | Yeast Zebrafish |
| regulation of neuron differentiation | GO:0045664 | 103 | 0.048 | |
| multicellular organismal aging | GO:0010259 | 140 | 0.048 | |
| regulation of mitotic cell cycle | GO:0007346 | 190 | 0.046 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.045 | |
| regulation of multicellular organismal development | GO:2000026 | 414 | 0.044 | |
| mrna processing | GO:0006397 | 104 | 0.043 | |
| positive regulation of multicellular organismal process | GO:0051240 | 143 | 0.039 | |
| dendrite development | GO:0016358 | 204 | 0.039 | |
| rna splicing | GO:0008380 | 83 | 0.037 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.033 | Zebrafish |
| multi multicellular organism process | GO:0044706 | 123 | 0.033 | |
| regulation of cell cycle process | GO:0010564 | 181 | 0.033 | |
| regulation of cell differentiation | GO:0045595 | 302 | 0.032 | |
| regulation of nervous system development | GO:0051960 | 248 | 0.032 | |
| mrna splicing via spliceosome | GO:0000398 | 73 | 0.031 | |
| cellular macromolecule localization | GO:0070727 | 220 | 0.031 | |
| aging | GO:0007568 | 143 | 0.030 | |
| determination of adult lifespan | GO:0008340 | 137 | 0.030 | |
| snrna processing | GO:0016180 | 14 | 0.030 | |
| cell proliferation | GO:0008283 | 299 | 0.029 | |
| regulation of neurogenesis | GO:0050767 | 158 | 0.029 | |
| regulation of alternative mrna splicing via spliceosome | GO:0000381 | 60 | 0.028 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.028 | |
| regulation of glial cell proliferation | GO:0060251 | 11 | 0.027 | |
| developmental growth | GO:0048589 | 280 | 0.026 | |
| positive regulation of developmental process | GO:0051094 | 143 | 0.025 | |
| rna splicing via transesterification reactions | GO:0000375 | 73 | 0.025 | |
| regulation of mrna 3 end processing | GO:0031440 | 7 | 0.024 | |
| striated muscle myosin thick filament assembly | GO:0071688 | 3 | 0.023 | |
| response to organic substance | GO:0010033 | 284 | 0.023 | |
| dendrite morphogenesis | GO:0048813 | 199 | 0.023 | |
| positive regulation of signaling | GO:0023056 | 243 | 0.023 | |
| wound healing | GO:0042060 | 75 | 0.022 | |
| positive regulation of signal transduction | GO:0009967 | 223 | 0.022 | |
| gene silencing | GO:0016458 | 138 | 0.022 | |
| regulation of cellular localization | GO:0060341 | 136 | 0.022 | |
| negative regulation of gene expression | GO:0010629 | 387 | 0.022 | |
| regulation of neuron projection development | GO:0010975 | 69 | 0.021 | |
| alternative mrna splicing via spliceosome | GO:0000380 | 60 | 0.021 | |
| immune system process | GO:0002376 | 347 | 0.021 | |
| protein localization | GO:0008104 | 284 | 0.021 | |
| growth | GO:0040007 | 359 | 0.021 | |
| multi organism behavior | GO:0051705 | 175 | 0.021 | |
| organic substance transport | GO:0071702 | 257 | 0.020 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.020 | |
| regulation of anatomical structure size | GO:0090066 | 163 | 0.020 | |
| phosphorylation | GO:0016310 | 294 | 0.020 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.020 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.019 | |
| axon development | GO:0061564 | 297 | 0.019 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 145 | 0.018 | |
| positive regulation of wnt signaling pathway | GO:0030177 | 25 | 0.018 | |
| regulation of transport | GO:0051049 | 181 | 0.018 | |
| positive regulation of mrna processing | GO:0050685 | 4 | 0.018 | |
| cellular macromolecular complex assembly | GO:0034622 | 153 | 0.018 | Zebrafish |
| negative regulation of cell death | GO:0060548 | 81 | 0.017 | |
| cellular component assembly involved in morphogenesis | GO:0010927 | 151 | 0.017 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.017 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.016 | |
| epithelial cell differentiation | GO:0030855 | 322 | 0.016 | |
| regulation of histone deacetylation | GO:0031063 | 2 | 0.016 | |
| regulation of cell size | GO:0008361 | 63 | 0.016 | |
| ion transport | GO:0006811 | 145 | 0.016 | |
| imaginal disc derived appendage development | GO:0048737 | 399 | 0.016 | |
| regulation of localization | GO:0032879 | 275 | 0.016 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.015 | |
| axonogenesis | GO:0007409 | 290 | 0.015 | |
| stem cell proliferation | GO:0072089 | 88 | 0.015 | |
| notch signaling pathway | GO:0007219 | 120 | 0.015 | |
| rna localization | GO:0006403 | 115 | 0.015 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 270 | 0.015 | |
| response to wounding | GO:0009611 | 94 | 0.015 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.015 | |
| developmental cell growth | GO:0048588 | 52 | 0.014 | |
| single organism biosynthetic process | GO:0044711 | 206 | 0.014 | |
| positive regulation of transport | GO:0051050 | 92 | 0.014 | |
| multicellular organismal reproductive behavior | GO:0033057 | 110 | 0.014 | |
| nuclear import | GO:0051170 | 51 | 0.014 | |
| cell death | GO:0008219 | 279 | 0.014 | |
| positive regulation of mrna metabolic process | GO:1903313 | 5 | 0.014 | |
| ribonucleoprotein complex assembly | GO:0022618 | 23 | 0.014 | Zebrafish |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.014 | |
| rna phosphodiester bond hydrolysis | GO:0090501 | 17 | 0.014 | Yeast |
| negative regulation of cell cycle | GO:0045786 | 116 | 0.013 | |
| protein transport | GO:0015031 | 155 | 0.013 | |
| glial cell proliferation | GO:0014009 | 13 | 0.013 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.013 | |
| establishment or maintenance of cell polarity | GO:0007163 | 167 | 0.013 | Yeast |
| regulation of cell proliferation | GO:0042127 | 163 | 0.013 | |
| cellular protein modification process | GO:0006464 | 438 | 0.013 | |
| kidney development | GO:0001822 | 3 | 0.013 | |
| regulation of molecular function | GO:0065009 | 217 | 0.013 | |
| defense response to bacterium | GO:0042742 | 178 | 0.013 | |
| negative regulation of mitotic cell cycle | GO:0045930 | 109 | 0.013 | |
| extrinsic apoptotic signaling pathway | GO:0097191 | 1 | 0.013 | |
| anatomical structure homeostasis | GO:0060249 | 97 | 0.012 | |
| negative regulation of rna metabolic process | GO:0051253 | 251 | 0.012 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.012 | |
| muscle structure development | GO:0061061 | 224 | 0.012 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.012 | |
| aromatic amino acid family metabolic process | GO:0009072 | 3 | 0.012 | |
| protein modification process | GO:0036211 | 438 | 0.012 | |
| spindle organization | GO:0007051 | 253 | 0.012 | |
| establishment of organelle localization | GO:0051656 | 122 | 0.012 | |
| cellular amino acid metabolic process | GO:0006520 | 61 | 0.012 | |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.012 | |
| sex differentiation | GO:0007548 | 81 | 0.012 | |
| canonical wnt signaling pathway | GO:0060070 | 21 | 0.011 | |
| catecholamine biosynthetic process | GO:0042423 | 3 | 0.011 | |
| posttranscriptional gene silencing | GO:0016441 | 46 | 0.011 | |
| regulation of developmental growth | GO:0048638 | 174 | 0.011 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.011 | |
| cellular catabolic process | GO:0044248 | 372 | 0.011 | |
| mitotic spindle organization | GO:0007052 | 220 | 0.011 | |
| response to endogenous stimulus | GO:0009719 | 119 | 0.011 | |
| maintenance of location | GO:0051235 | 73 | 0.011 | |
| single organism intracellular transport | GO:1902582 | 207 | 0.011 | |
| single organism behavior | GO:0044708 | 391 | 0.011 | |
| regulation of intracellular transport | GO:0032386 | 64 | 0.011 | |
| compound eye morphogenesis | GO:0001745 | 249 | 0.011 | |
| negative regulation of signaling | GO:0023057 | 219 | 0.010 | |
| regulation of gene expression epigenetic | GO:0040029 | 128 | 0.010 | |
| digestive system development | GO:0055123 | 149 | 0.010 | Zebrafish |
| secretion | GO:0046903 | 109 | 0.010 | |
| mitotic g2 m transition checkpoint | GO:0044818 | 70 | 0.010 | |
| positive regulation of rna metabolic process | GO:0051254 | 271 | 0.010 | |
| connective tissue development | GO:0061448 | 3 | 0.010 | |
| phagocytosis | GO:0006909 | 215 | 0.010 | |
| protein targeting | GO:0006605 | 64 | 0.010 | |
| positive regulation of immune response | GO:0050778 | 63 | 0.010 | |
| protein targeting to nucleus | GO:0044744 | 51 | 0.010 | |
| cellular protein localization | GO:0034613 | 160 | 0.010 | |
| regulation of epidermal growth factor receptor signaling pathway | GO:0042058 | 42 | 0.010 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.010 | |
| negative regulation of cell communication | GO:0010648 | 223 | 0.010 | |