| negative regulation of gene expression | GO:0010629 | 387 | 0.601 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 267 | 0.395 | |
| muscle structure development | GO:0061061 | 224 | 0.383 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.335 | |
| positive regulation of rna metabolic process | GO:0051254 | 271 | 0.306 | |
| regulation of mitotic cell cycle | GO:0007346 | 190 | 0.252 | |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.233 | |
| regulation of cell cycle process | GO:0010564 | 181 | 0.223 | |
| mitotic cell cycle checkpoint | GO:0007093 | 88 | 0.222 | |
| mitotic g2 m transition checkpoint | GO:0044818 | 70 | 0.222 | |
| mrna processing | GO:0006397 | 104 | 0.214 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 152 | 0.211 | |
| muscle organ development | GO:0007517 | 127 | 0.201 | |
| negative regulation of cell cycle phase transition | GO:1901988 | 103 | 0.193 | |
| mrna metabolic process | GO:0016071 | 124 | 0.185 | |
| larval development | GO:0002164 | 104 | 0.183 | |
| cell cycle checkpoint | GO:0000075 | 95 | 0.172 | |
| negative regulation of mitotic cell cycle phase transition | GO:1901991 | 103 | 0.154 | |
| heterocycle catabolic process | GO:0046700 | 166 | 0.152 | |
| mitotic spindle organization | GO:0007052 | 220 | 0.151 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.128 | |
| gene silencing | GO:0016458 | 138 | 0.126 | |
| organelle fission | GO:0048285 | 340 | 0.125 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 130 | 0.124 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 261 | 0.117 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.113 | |
| cellular response to dna damage stimulus | GO:0006974 | 223 | 0.109 | |
| negative regulation of biosynthetic process | GO:0009890 | 277 | 0.096 | |
| nucleobase containing compound catabolic process | GO:0034655 | 165 | 0.095 | |
| g2 dna damage checkpoint | GO:0031572 | 69 | 0.094 | |
| cell cycle phase transition | GO:0044770 | 140 | 0.086 | |
| mitotic g2 dna damage checkpoint | GO:0007095 | 69 | 0.086 | |
| rna processing | GO:0006396 | 147 | 0.084 | |
| negative regulation of cell cycle process | GO:0010948 | 109 | 0.082 | |
| cellular catabolic process | GO:0044248 | 372 | 0.079 | |
| response to organic substance | GO:0010033 | 284 | 0.077 | |
| negative regulation of response to stimulus | GO:0048585 | 258 | 0.077 | |
| gonad development | GO:0008406 | 50 | 0.072 | |
| tissue morphogenesis | GO:0048729 | 297 | 0.072 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.071 | |
| dna damage checkpoint | GO:0000077 | 78 | 0.070 | |
| axon development | GO:0061564 | 297 | 0.068 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.068 | |
| regulation of cell cycle phase transition | GO:1901987 | 130 | 0.068 | |
| rna splicing | GO:0008380 | 83 | 0.066 | |
| negative regulation of signaling | GO:0023057 | 219 | 0.065 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.063 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 270 | 0.063 | |
| mitotic dna integrity checkpoint | GO:0044774 | 75 | 0.063 | |
| body morphogenesis | GO:0010171 | 2 | 0.061 | |
| gene silencing by mirna | GO:0035195 | 22 | 0.060 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 165 | 0.060 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.060 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.060 | |
| response to biotic stimulus | GO:0009607 | 294 | 0.057 | |
| mitotic dna damage checkpoint | GO:0044773 | 74 | 0.056 | |
| reproductive structure development | GO:0048608 | 74 | 0.056 | |
| aromatic compound catabolic process | GO:0019439 | 166 | 0.055 | |
| retina development in camera type eye | GO:0060041 | 4 | 0.055 | |
| determination of adult lifespan | GO:0008340 | 137 | 0.055 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.054 | |
| negative regulation of cell cycle | GO:0045786 | 116 | 0.053 | |
| mitotic cell cycle phase transition | GO:0044772 | 138 | 0.053 | |
| aging | GO:0007568 | 143 | 0.052 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 265 | 0.051 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.050 | |
| tube development | GO:0035295 | 244 | 0.046 | |
| spindle organization | GO:0007051 | 253 | 0.045 | |
| positive regulation of transcription dna templated | GO:0045893 | 266 | 0.045 | |
| reproductive system development | GO:0061458 | 74 | 0.045 | |
| dna metabolic process | GO:0006259 | 227 | 0.044 | |
| negative regulation of mitotic cell cycle | GO:0045930 | 109 | 0.043 | |
| development of primary sexual characteristics | GO:0045137 | 50 | 0.042 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.042 | |
| response to other organism | GO:0051707 | 293 | 0.042 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 204 | 0.042 | |
| protein modification process | GO:0036211 | 438 | 0.041 | |
| cell motility | GO:0048870 | 251 | 0.041 | |
| mrna splicing via spliceosome | GO:0000398 | 73 | 0.041 | |
| nuclear division | GO:0000280 | 332 | 0.039 | |
| regulation of growth | GO:0040008 | 233 | 0.038 | |
| regulation of organelle organization | GO:0033043 | 196 | 0.038 | |
| immune response | GO:0006955 | 246 | 0.037 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.036 | |
| cell death | GO:0008219 | 279 | 0.036 | |
| cell division | GO:0051301 | 248 | 0.035 | |
| negative regulation of transcription dna templated | GO:0045892 | 237 | 0.034 | |
| taxis | GO:0042330 | 304 | 0.034 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 79 | 0.034 | |
| intermediate filament cytoskeleton organization | GO:0045104 | 1 | 0.033 | |
| meiotic nuclear division | GO:0007126 | 151 | 0.033 | |
| cellular protein catabolic process | GO:0044257 | 83 | 0.033 | |
| rna splicing via transesterification reactions with bulged adenosine as nucleophile | GO:0000377 | 73 | 0.032 | |
| response to bacterium | GO:0009617 | 198 | 0.032 | |
| cell migration | GO:0016477 | 238 | 0.031 | |
| defense response | GO:0006952 | 300 | 0.031 | |
| dna integrity checkpoint | GO:0031570 | 81 | 0.031 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.030 | |
| regulation of meiosis | GO:0040020 | 3 | 0.030 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 106 | 0.030 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.030 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 145 | 0.029 | |
| rna splicing via transesterification reactions | GO:0000375 | 73 | 0.029 | |
| organic cyclic compound catabolic process | GO:1901361 | 168 | 0.029 | |
| localization of cell | GO:0051674 | 257 | 0.029 | |
| protein catabolic process | GO:0030163 | 101 | 0.029 | |
| rna 3 end processing | GO:0031123 | 45 | 0.029 | |
| negative regulation of cell communication | GO:0010648 | 223 | 0.029 | |
| camera type eye development | GO:0043010 | 4 | 0.027 | |
| muscle cell differentiation | GO:0042692 | 103 | 0.027 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 240 | 0.027 | |
| ribonucleoprotein complex disassembly | GO:0032988 | 1 | 0.027 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 240 | 0.026 | |
| regulation of cytoplasmic transport | GO:1903649 | 47 | 0.026 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.026 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 266 | 0.025 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 78 | 0.025 | |
| cellular protein modification process | GO:0006464 | 438 | 0.025 | |
| smoothened signaling pathway | GO:0007224 | 49 | 0.025 | |
| phosphorylation of rna polymerase ii c terminal domain | GO:0070816 | 1 | 0.025 | |
| regulation of establishment of protein localization | GO:0070201 | 61 | 0.024 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.024 | |
| establishment or maintenance of polarity of larval imaginal disc epithelium | GO:0016336 | 3 | 0.023 | |
| regulation of small gtpase mediated signal transduction | GO:0051056 | 93 | 0.022 | |
| regulation of cell proliferation | GO:0042127 | 163 | 0.022 | |
| regulation of cellular component biogenesis | GO:0044087 | 201 | 0.022 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.021 | |
| response to external biotic stimulus | GO:0043207 | 293 | 0.021 | |
| regionalization | GO:0003002 | 416 | 0.021 | |
| regulation of chromosome organization | GO:0033044 | 64 | 0.021 | |
| stem cell maintenance | GO:0019827 | 67 | 0.020 | |
| axon guidance | GO:0007411 | 233 | 0.020 | |
| catabolic process | GO:0009056 | 409 | 0.020 | |
| proteolysis | GO:0006508 | 192 | 0.020 | |
| morphogenesis of an epithelium | GO:0002009 | 276 | 0.019 | |
| protein modification by small protein conjugation | GO:0032446 | 79 | 0.019 | |
| regulation of cell division | GO:0051302 | 72 | 0.019 | |
| regulation of mrna processing | GO:0050684 | 71 | 0.019 | |
| carbohydrate derivative metabolic process | GO:1901135 | 217 | 0.019 | |
| positive regulation of developmental process | GO:0051094 | 143 | 0.019 | |
| skeletal muscle organ development | GO:0060538 | 48 | 0.019 | |
| regulation of localization | GO:0032879 | 275 | 0.018 | |
| negative regulation of signal transduction | GO:0009968 | 206 | 0.018 | |
| homeostatic process | GO:0042592 | 199 | 0.017 | |
| stem cell differentiation | GO:0048863 | 117 | 0.017 | |
| gene silencing by rna | GO:0031047 | 57 | 0.017 | |
| regulation of developmental growth | GO:0048638 | 174 | 0.017 | |
| sex differentiation | GO:0007548 | 81 | 0.017 | |
| endomembrane system organization | GO:0010256 | 119 | 0.017 | |
| organelle assembly | GO:0070925 | 198 | 0.017 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.017 | |
| tube morphogenesis | GO:0035239 | 191 | 0.017 | |
| response to temperature stimulus | GO:0009266 | 106 | 0.016 | |
| death | GO:0016265 | 284 | 0.016 | |
| protein phosphorylation | GO:0006468 | 169 | 0.016 | |
| larval somatic muscle development | GO:0007526 | 19 | 0.016 | |
| ribonucleoside catabolic process | GO:0042454 | 112 | 0.016 | |
| regulation of mrna splicing via spliceosome | GO:0048024 | 64 | 0.015 | |
| programmed cell death | GO:0012501 | 257 | 0.015 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 119 | 0.015 | |
| enzyme linked receptor protein signaling pathway | GO:0007167 | 179 | 0.015 | |
| regulation of transport | GO:0051049 | 181 | 0.015 | |
| regulation of cellular localization | GO:0060341 | 136 | 0.015 | |
| signal transduction by phosphorylation | GO:0023014 | 107 | 0.015 | |
| multicellular organismal reproductive behavior | GO:0033057 | 110 | 0.015 | |
| mitotic spindle elongation | GO:0000022 | 81 | 0.015 | |
| cellular macromolecular complex assembly | GO:0034622 | 153 | 0.015 | |
| regulation of gene expression epigenetic | GO:0040029 | 128 | 0.014 | |
| protein complex assembly | GO:0006461 | 200 | 0.014 | |
| meiotic cell cycle | GO:0051321 | 171 | 0.014 | |
| microtubule organizing center organization | GO:0031023 | 168 | 0.014 | |
| centrosome organization | GO:0051297 | 163 | 0.014 | |
| rna polyadenylation | GO:0043631 | 12 | 0.013 | |
| modification dependent protein catabolic process | GO:0019941 | 78 | 0.013 | |
| regulation of cellular protein catabolic process | GO:1903362 | 44 | 0.013 | |
| regulation of cellular component size | GO:0032535 | 98 | 0.013 | |
| striated muscle cell development | GO:0055002 | 50 | 0.013 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 139 | 0.013 | |
| mrna polyadenylation | GO:0006378 | 11 | 0.013 | |
| chromatin remodeling | GO:0006338 | 72 | 0.013 | |
| mrna 3 end processing | GO:0031124 | 28 | 0.013 | |
| negative regulation of rna metabolic process | GO:0051253 | 251 | 0.013 | |
| phosphorylation | GO:0016310 | 294 | 0.013 | |
| regulation of phosphatase activity | GO:0010921 | 3 | 0.013 | |
| syncytium formation | GO:0006949 | 43 | 0.012 | |
| regulation of immune response | GO:0050776 | 118 | 0.012 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.012 | |
| regulation of notch signaling pathway | GO:0008593 | 100 | 0.012 | |
| striated muscle cell differentiation | GO:0051146 | 90 | 0.012 | |
| multicellular organismal aging | GO:0010259 | 140 | 0.012 | |
| intracellular signal transduction | GO:0035556 | 300 | 0.012 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 119 | 0.012 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.012 | |
| apoptotic process | GO:0006915 | 159 | 0.012 | |
| regulation of response to external stimulus | GO:0032101 | 115 | 0.011 | |
| endocytosis | GO:0006897 | 310 | 0.011 | |
| protein complex biogenesis | GO:0070271 | 201 | 0.011 | |
| alternative mrna splicing via spliceosome | GO:0000380 | 60 | 0.011 | |
| regulation of apoptotic process | GO:0042981 | 130 | 0.011 | |
| neuron projection guidance | GO:0097485 | 241 | 0.011 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 3 | 0.011 | |
| regulation of dna metabolic process | GO:0051052 | 34 | 0.011 | |
| positive regulation of intracellular signal transduction | GO:1902533 | 116 | 0.011 | |
| growth | GO:0040007 | 359 | 0.011 | |
| positive regulation of nervous system development | GO:0051962 | 69 | 0.011 | |
| ribonucleoprotein complex assembly | GO:0022618 | 23 | 0.010 | |
| regulation of hemocyte proliferation | GO:0035206 | 37 | 0.010 | |
| regulation of protein localization | GO:0032880 | 76 | 0.010 | |
| anatomical structure homeostasis | GO:0060249 | 97 | 0.010 | |
| regulation of anatomical structure morphogenesis | GO:0022603 | 242 | 0.010 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 174 | 0.010 | |
