| peptidyl amino acid modification | GO:0018193 | 105 | 0.157 | |
| intracellular transport | GO:0046907 | 228 | 0.153 | |
| histone modification | GO:0016570 | 106 | 0.129 | |
| covalent chromatin modification | GO:0016569 | 106 | 0.109 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.092 | |
| peptidyl lysine modification | GO:0018205 | 57 | 0.085 | |
| chromosome organization | GO:0051276 | 360 | 0.080 | |
| cellular protein modification process | GO:0006464 | 438 | 0.076 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 267 | 0.072 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.067 | |
| regulation of alternative mrna splicing via spliceosome | GO:0000381 | 60 | 0.067 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.067 | |
| regionalization | GO:0003002 | 416 | 0.065 | |
| protein acetylation | GO:0006473 | 39 | 0.063 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.062 | |
| regulation of mrna processing | GO:0050684 | 71 | 0.060 | |
| positive regulation of signaling | GO:0023056 | 243 | 0.047 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.044 | |
| rna splicing | GO:0008380 | 83 | 0.043 | |
| nucleobase containing compound catabolic process | GO:0034655 | 165 | 0.043 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.042 | |
| response to biotic stimulus | GO:0009607 | 294 | 0.042 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.040 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.040 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.038 | |
| regulation of phosphate metabolic process | GO:0019220 | 210 | 0.037 | |
| endomembrane system organization | GO:0010256 | 119 | 0.036 | |
| mrna cis splicing via spliceosome | GO:0045292 | 1 | 0.036 | |
| negative regulation of developmental process | GO:0051093 | 201 | 0.035 | |
| chromatin modification | GO:0016568 | 147 | 0.035 | |
| histone acetylation | GO:0016573 | 38 | 0.035 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.035 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.034 | |
| chromatin organization | GO:0006325 | 207 | 0.034 | |
| regulation of gene expression epigenetic | GO:0040029 | 128 | 0.033 | |
| negative regulation of rna metabolic process | GO:0051253 | 251 | 0.032 | |
| chromosome segregation | GO:0007059 | 157 | 0.031 | |
| chromatin silencing | GO:0006342 | 76 | 0.029 | |
| phosphorylation | GO:0016310 | 294 | 0.029 | |
| muscle structure development | GO:0061061 | 224 | 0.029 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 204 | 0.029 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.029 | |
| negative regulation of chromosome organization | GO:2001251 | 19 | 0.029 | |
| gene silencing | GO:0016458 | 138 | 0.029 | |
| regulation of protein modification process | GO:0031399 | 112 | 0.028 | |
| rna processing | GO:0006396 | 147 | 0.028 | |
| negative regulation of transcription dna templated | GO:0045892 | 237 | 0.028 | |
| peptidyl lysine acetylation | GO:0018394 | 39 | 0.028 | |
| positive regulation of signal transduction | GO:0009967 | 223 | 0.027 | |
| regulation of mrna splicing via spliceosome | GO:0048024 | 64 | 0.026 | |
| regulation of cell differentiation | GO:0045595 | 302 | 0.026 | |
| phagocytosis | GO:0006909 | 215 | 0.025 | |
| positive regulation of transcription dna templated | GO:0045893 | 266 | 0.025 | |
| dna metabolic process | GO:0006259 | 227 | 0.025 | |
| cell division | GO:0051301 | 248 | 0.024 | |
| organic substance transport | GO:0071702 | 257 | 0.024 | |
| methylation | GO:0032259 | 47 | 0.024 | |
| response to heat | GO:0009408 | 63 | 0.023 | |
| aromatic compound catabolic process | GO:0019439 | 166 | 0.022 | |
| aging | GO:0007568 | 143 | 0.022 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 240 | 0.022 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 265 | 0.022 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.021 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 240 | 0.021 | |
| rna splicing via transesterification reactions | GO:0000375 | 73 | 0.021 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.021 | |
| organelle fission | GO:0048285 | 340 | 0.021 | |
| internal peptidyl lysine acetylation | GO:0018393 | 38 | 0.021 | |
| positive regulation of phosphorylation | GO:0042327 | 87 | 0.021 | |
| cell death | GO:0008219 | 279 | 0.021 | |
| negative regulation of programmed cell death | GO:0043069 | 72 | 0.020 | |
| regulation of phosphorylation | GO:0042325 | 147 | 0.020 | |
| histone methylation | GO:0016571 | 40 | 0.020 | |
| establishment of localization in cell | GO:0051649 | 402 | 0.020 | |
| signal transduction by phosphorylation | GO:0023014 | 107 | 0.020 | |
| histone h2a acetylation | GO:0043968 | 1 | 0.020 | |
| carboxylic acid metabolic process | GO:0019752 | 92 | 0.019 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.019 | |
| regulation of multicellular organismal development | GO:2000026 | 414 | 0.019 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.018 | |
| regulation of apoptotic process | GO:0042981 | 130 | 0.018 | |
| muscle organ development | GO:0007517 | 127 | 0.018 | |
| oocyte dorsal ventral axis specification | GO:0007310 | 34 | 0.018 | |
| negative regulation of cell differentiation | GO:0045596 | 143 | 0.018 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 139 | 0.018 | |
| endocytosis | GO:0006897 | 310 | 0.018 | |
| internal protein amino acid acetylation | GO:0006475 | 38 | 0.018 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.017 | |
| single organism behavior | GO:0044708 | 391 | 0.017 | |
| mrna processing | GO:0006397 | 104 | 0.017 | |
| response to other organism | GO:0051707 | 293 | 0.017 | |
| organic cyclic compound catabolic process | GO:1901361 | 168 | 0.017 | |
| regulation of gene silencing | GO:0060968 | 63 | 0.016 | |
| regulation of phosphorus metabolic process | GO:0051174 | 210 | 0.016 | |
| programmed cell death | GO:0012501 | 257 | 0.016 | |
| negative regulation of gene expression | GO:0010629 | 387 | 0.016 | |
| alternative mrna splicing via spliceosome | GO:0000380 | 60 | 0.015 | |
| protein acylation | GO:0043543 | 42 | 0.015 | |
| nucleoside phosphate metabolic process | GO:0006753 | 162 | 0.015 | |
| ribonucleotide metabolic process | GO:0009259 | 145 | 0.014 | |
| posttranscriptional gene silencing by rna | GO:0035194 | 45 | 0.014 | |
| negative regulation of chromatin silencing | GO:0031936 | 9 | 0.014 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 165 | 0.014 | |
| death | GO:0016265 | 284 | 0.014 | |
| heterocycle catabolic process | GO:0046700 | 166 | 0.014 | |
| rna catabolic process | GO:0006401 | 37 | 0.014 | |
| regulation of cell death | GO:0010941 | 173 | 0.013 | |
| amine metabolic process | GO:0009308 | 12 | 0.013 | |
| protein dna complex subunit organization | GO:0071824 | 86 | 0.013 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.013 | |
| multicellular organismal aging | GO:0010259 | 140 | 0.013 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 261 | 0.013 | |
| response to external biotic stimulus | GO:0043207 | 293 | 0.013 | |
| spermatogenesis | GO:0007283 | 200 | 0.012 | |
| mitotic nuclear division | GO:0007067 | 213 | 0.012 | |
| negative regulation of apoptotic process | GO:0043066 | 63 | 0.012 | |
| regulation of molecular function | GO:0065009 | 217 | 0.012 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.012 | |
| defense response to bacterium | GO:0042742 | 178 | 0.012 | |
| immune effector process | GO:0002252 | 98 | 0.012 | |
| positive regulation of mapk cascade | GO:0043410 | 63 | 0.012 | |
| protein localization | GO:0008104 | 284 | 0.012 | |
| apoptotic process | GO:0006915 | 159 | 0.012 | |
| regulation of cell division | GO:0051302 | 72 | 0.012 | |
| compound eye development | GO:0048749 | 307 | 0.012 | |
| regulation of mapk cascade | GO:0043408 | 92 | 0.012 | |
| rna splicing via transesterification reactions with bulged adenosine as nucleophile | GO:0000377 | 73 | 0.012 | |
| negative regulation of cell death | GO:0060548 | 81 | 0.012 | |
| positive regulation of rho protein signal transduction | GO:0035025 | 4 | 0.012 | |
| nitrogen compound transport | GO:0071705 | 85 | 0.011 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 139 | 0.011 | |
| mrna metabolic process | GO:0016071 | 124 | 0.011 | |
| regulation of programmed cell death | GO:0043067 | 152 | 0.011 | |
| intracellular signal transduction | GO:0035556 | 300 | 0.011 | |
| small gtpase mediated signal transduction | GO:0007264 | 88 | 0.011 | |
| sensory organ morphogenesis | GO:0090596 | 260 | 0.011 | |
| regulation of rna splicing | GO:0043484 | 69 | 0.011 | |
| ribonucleoprotein complex disassembly | GO:0032988 | 1 | 0.011 | |
| regulation of ras protein signal transduction | GO:0046578 | 93 | 0.010 | |
| establishment of rna localization | GO:0051236 | 47 | 0.010 | |
| protein modification process | GO:0036211 | 438 | 0.010 | |
| regulation of dna metabolic process | GO:0051052 | 34 | 0.010 | |
| oxoacid metabolic process | GO:0043436 | 103 | 0.010 | |
| gland development | GO:0048732 | 191 | 0.010 | |