| protein modification by small protein conjugation or removal | GO:0070647 | 106 | 0.853 | |
| protein modification by small protein conjugation | GO:0032446 | 79 | 0.405 | |
| rna splicing | GO:0008380 | 83 | 0.338 | |
| larval development | GO:0002164 | 104 | 0.322 | Worm |
| organic substance catabolic process | GO:1901575 | 308 | 0.299 | |
| negative regulation of neuroblast proliferation | GO:0007406 | 27 | 0.283 | |
| developmental growth | GO:0048589 | 280 | 0.258 | |
| dna templated transcription elongation | GO:0006354 | 18 | 0.229 | |
| growth | GO:0040007 | 359 | 0.219 | |
| regulation of dna templated transcription elongation | GO:0032784 | 17 | 0.213 | |
| mitotic dna damage checkpoint | GO:0044773 | 74 | 0.213 | |
| transcription elongation from rna polymerase ii promoter | GO:0006368 | 18 | 0.208 | |
| cell proliferation | GO:0008283 | 299 | 0.204 | |
| reproductive structure development | GO:0048608 | 74 | 0.203 | Worm |
| cellular protein modification process | GO:0006464 | 438 | 0.201 | |
| gonad development | GO:0008406 | 50 | 0.187 | Worm |
| rna splicing via transesterification reactions with bulged adenosine as nucleophile | GO:0000377 | 73 | 0.177 | |
| protein deneddylation | GO:0000338 | 8 | 0.174 | |
| mrna splicing via spliceosome | GO:0000398 | 73 | 0.166 | |
| positive regulation of multicellular organismal process | GO:0051240 | 143 | 0.148 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.142 | |
| aging | GO:0007568 | 143 | 0.138 | |
| cellular catabolic process | GO:0044248 | 372 | 0.138 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 152 | 0.108 | Worm |
| mitotic spindle organization | GO:0007052 | 220 | 0.108 | |
| spindle organization | GO:0007051 | 253 | 0.106 | |
| cullin deneddylation | GO:0010388 | 3 | 0.105 | |
| multicellular organism growth | GO:0035264 | 46 | 0.096 | |
| mrna cis splicing via spliceosome | GO:0045292 | 1 | 0.096 | |
| mitotic g2 dna damage checkpoint | GO:0007095 | 69 | 0.092 | |
| negative regulation of response to stimulus | GO:0048585 | 258 | 0.087 | |
| regulation of cell proliferation | GO:0042127 | 163 | 0.085 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.077 | |
| mitotic g2 m transition checkpoint | GO:0044818 | 70 | 0.075 | |
| rna splicing via transesterification reactions | GO:0000375 | 73 | 0.074 | |
| regulation of neuroblast proliferation | GO:1902692 | 34 | 0.074 | |
| sex differentiation | GO:0007548 | 81 | 0.069 | Worm |
| regulation of programmed cell death | GO:0043067 | 152 | 0.065 | Worm |
| rna processing | GO:0006396 | 147 | 0.065 | |
| endocytosis | GO:0006897 | 310 | 0.063 | |
| cellular response to chemical stimulus | GO:0070887 | 199 | 0.063 | |
| posttranscriptional gene silencing | GO:0016441 | 46 | 0.062 | |
| response to organic substance | GO:0010033 | 284 | 0.056 | Rat |
| protein modification process | GO:0036211 | 438 | 0.055 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.055 | |
| apoptotic process | GO:0006915 | 159 | 0.053 | Worm |
| mrna metabolic process | GO:0016071 | 124 | 0.052 | |
| photoreceptor cell differentiation | GO:0046530 | 170 | 0.050 | |
| protein ubiquitination | GO:0016567 | 70 | 0.048 | |
| regulation of intracellular signal transduction | GO:1902531 | 236 | 0.047 | |
| intracellular signal transduction | GO:0035556 | 300 | 0.047 | |
| organelle assembly | GO:0070925 | 198 | 0.045 | |
| regulation of growth | GO:0040008 | 233 | 0.045 | |
| death | GO:0016265 | 284 | 0.043 | Worm |
| regulation of protein modification process | GO:0031399 | 112 | 0.043 | |
| cell death | GO:0008219 | 279 | 0.042 | Worm |
| mrna processing | GO:0006397 | 104 | 0.041 | |
| proteolysis | GO:0006508 | 192 | 0.041 | |
| spliceosomal snrnp assembly | GO:0000387 | 2 | 0.041 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.040 | |
| regulation of transcription elongation from rna polymerase ii promoter | GO:0034243 | 15 | 0.039 | |
| regulation of cell death | GO:0010941 | 173 | 0.038 | Worm |
| regulation of cell cycle process | GO:0010564 | 181 | 0.037 | |
| regulation of meiosis | GO:0040020 | 3 | 0.036 | |
| molting cycle | GO:0042303 | 56 | 0.036 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.036 | |
| cellular protein catabolic process | GO:0044257 | 83 | 0.036 | |
| reproductive system development | GO:0061458 | 74 | 0.035 | Worm |
| positive regulation of growth | GO:0045927 | 75 | 0.034 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.034 | |
| negative regulation of mitotic cell cycle | GO:0045930 | 109 | 0.033 | |
| catabolic process | GO:0009056 | 409 | 0.033 | |
| regulation of developmental growth | GO:0048638 | 174 | 0.032 | |
| negative regulation of neurogenesis | GO:0050768 | 53 | 0.031 | |
| histone ubiquitination | GO:0016574 | 4 | 0.031 | |
| body morphogenesis | GO:0010171 | 2 | 0.031 | |
| negative regulation of neural precursor cell proliferation | GO:2000178 | 27 | 0.031 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 204 | 0.030 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.030 | |
| regulation of neurogenesis | GO:0050767 | 158 | 0.030 | |
| left right axis specification | GO:0070986 | 1 | 0.029 | |
| development of primary sexual characteristics | GO:0045137 | 50 | 0.028 | Worm |
| regulation of response to stress | GO:0080134 | 200 | 0.028 | |
| response to organic cyclic compound | GO:0014070 | 89 | 0.027 | Rat |
| regulation of proteolysis | GO:0030162 | 87 | 0.027 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.027 | |
| g2 dna damage checkpoint | GO:0031572 | 69 | 0.027 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 130 | 0.026 | |
| establishment of oocyte nucleus localization involved in oocyte dorsal ventral axis specification | GO:0030722 | 6 | 0.026 | |
| negative regulation of intrinsic apoptotic signaling pathway | GO:2001243 | 1 | 0.026 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.026 | |
| transmembrane receptor protein tyrosine kinase signaling pathway | GO:0007169 | 116 | 0.026 | |
| mitotic cell cycle phase transition | GO:0044772 | 138 | 0.026 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 145 | 0.026 | |
| gland development | GO:0048732 | 191 | 0.026 | |
| scf dependent proteasomal ubiquitin dependent protein catabolic process | GO:0031146 | 1 | 0.026 | |
| genitalia development | GO:0048806 | 26 | 0.025 | Worm |
| protein catabolic process | GO:0030163 | 101 | 0.024 | |
| negative regulation of stem cell proliferation | GO:2000647 | 30 | 0.024 | |
| negative regulation of mitotic cell cycle phase transition | GO:1901991 | 103 | 0.023 | |
| protein modification by small protein removal | GO:0070646 | 28 | 0.023 | |
| eye photoreceptor cell differentiation | GO:0001754 | 145 | 0.023 | |
| rna interference | GO:0016246 | 27 | 0.023 | |
| response to nitrogen compound | GO:1901698 | 90 | 0.022 | |
| dendrite development | GO:0016358 | 204 | 0.022 | |
| posttranscriptional gene silencing by rna | GO:0035194 | 45 | 0.021 | |
| negative regulation of cell cycle process | GO:0010948 | 109 | 0.021 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.021 | |
| mitotic cell cycle checkpoint | GO:0007093 | 88 | 0.021 | |
| negative regulation of developmental process | GO:0051093 | 201 | 0.021 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.020 | |
| positive regulation of protein metabolic process | GO:0051247 | 128 | 0.019 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.019 | |
| cell cycle phase transition | GO:0044770 | 140 | 0.019 | |
| response to oxygen containing compound | GO:1901700 | 200 | 0.019 | |
| proteasomal protein catabolic process | GO:0010498 | 59 | 0.019 | |
| positive regulation of signal transduction | GO:0009967 | 223 | 0.019 | |
| cell migration | GO:0016477 | 238 | 0.019 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.018 | |
| modification dependent protein catabolic process | GO:0019941 | 78 | 0.018 | |
| organonitrogen compound catabolic process | GO:1901565 | 128 | 0.018 | |
| nucleotide metabolic process | GO:0009117 | 161 | 0.018 | |
| determination of adult lifespan | GO:0008340 | 137 | 0.018 | |
| regulation of phosphorylation | GO:0042325 | 147 | 0.018 | |
| nonassociative learning | GO:0046958 | 11 | 0.018 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.017 | |
| dna damage checkpoint | GO:0000077 | 78 | 0.017 | |
| hatching | GO:0035188 | 4 | 0.017 | |
| centrosome duplication | GO:0051298 | 121 | 0.017 | |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.017 | |
| positive regulation of dna templated transcription elongation | GO:0032786 | 11 | 0.016 | |
| phospholipid transport | GO:0015914 | 2 | 0.016 | |
| cellular response to dna damage stimulus | GO:0006974 | 223 | 0.016 | |
| regulation of mrna metabolic process | GO:1903311 | 72 | 0.016 | |
| regulation of rna splicing | GO:0043484 | 69 | 0.016 | |
| regulation of mitotic cell cycle | GO:0007346 | 190 | 0.016 | |
| regulation of multicellular organism growth | GO:0040014 | 40 | 0.015 | |
| negative regulation of multicellular organismal process | GO:0051241 | 142 | 0.015 | |
| organophosphate metabolic process | GO:0019637 | 195 | 0.015 | |
| regulation of mrna splicing via spliceosome | GO:0048024 | 64 | 0.015 | |
| regulation of cell cycle phase transition | GO:1901987 | 130 | 0.015 | |
| positive regulation of molecular function | GO:0044093 | 136 | 0.015 | |
| negative regulation of gene expression | GO:0010629 | 387 | 0.015 | |
| protein processing | GO:0016485 | 68 | 0.015 | |
| regulation of striated muscle contraction | GO:0006942 | 2 | 0.015 | |
| nuclear division | GO:0000280 | 332 | 0.014 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 83 | 0.014 | |
| regulation of phosphorus metabolic process | GO:0051174 | 210 | 0.014 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.014 | |
| protein neddylation | GO:0045116 | 5 | 0.014 | |
| positive regulation of intracellular signal transduction | GO:1902533 | 116 | 0.014 | |
| negative regulation of nervous system development | GO:0051961 | 92 | 0.014 | |
| single organism biosynthetic process | GO:0044711 | 206 | 0.013 | |
| brain development | GO:0007420 | 120 | 0.013 | |
| regulation of atp metabolic process | GO:1903578 | 6 | 0.013 | |
| cell motility | GO:0048870 | 251 | 0.013 | |
| histone h3 k9 modification | GO:0061647 | 12 | 0.013 | |
| ribonucleoprotein complex assembly | GO:0022618 | 23 | 0.013 | |
| protein complex biogenesis | GO:0070271 | 201 | 0.013 | |
| positive regulation of transcription elongation from rna polymerase ii promoter | GO:0032968 | 11 | 0.012 | |
| organic cyclic compound catabolic process | GO:1901361 | 168 | 0.012 | |
| regulation of cdc42 protein signal transduction | GO:0032489 | 3 | 0.012 | |
| multicellular organismal aging | GO:0010259 | 140 | 0.012 | |
| mitotic dna integrity checkpoint | GO:0044774 | 75 | 0.012 | |
| negative regulation of protein binding | GO:0032091 | 1 | 0.012 | |
| eye development | GO:0001654 | 323 | 0.012 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 28 | 0.012 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.012 | |
| compound eye photoreceptor cell differentiation | GO:0001751 | 140 | 0.012 | |
| localization of cell | GO:0051674 | 257 | 0.012 | |
| positive regulation of binding | GO:0051099 | 4 | 0.012 | |
| intermediate filament based process | GO:0045103 | 1 | 0.011 | |
| dendrite morphogenesis | GO:0048813 | 199 | 0.011 | |
| regulation of syncytial blastoderm mitotic cell cycle | GO:0007348 | 4 | 0.011 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 78 | 0.011 | |
| cell cycle checkpoint | GO:0000075 | 95 | 0.011 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.011 | |
| organelle inheritance | GO:0048308 | 2 | 0.011 | |
| dna methylation on cytosine | GO:0032776 | 1 | 0.011 | |
| chaperone mediated protein transport | GO:0072321 | 1 | 0.011 | |
| regulation of cell division | GO:0051302 | 72 | 0.010 | |
| regulation of hemocyte proliferation | GO:0035206 | 37 | 0.010 | |
