| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.766 | Fly |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.361 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 261 | 0.359 | |
| nuclear division | GO:0000280 | 332 | 0.317 | Fly |
| negative regulation of rna metabolic process | GO:0051253 | 251 | 0.140 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.132 | Fly |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 265 | 0.131 | |
| cellularization | GO:0007349 | 90 | 0.122 | Fly |
| organelle fission | GO:0048285 | 340 | 0.121 | Fly |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 267 | 0.119 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.110 | Fly |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 270 | 0.106 | |
| meiotic cell cycle | GO:0051321 | 171 | 0.103 | Fly |
| positive regulation of transcription dna templated | GO:0045893 | 266 | 0.093 | Fly |
| establishment or maintenance of cell polarity | GO:0007163 | 167 | 0.091 | |
| cellular protein modification process | GO:0006464 | 438 | 0.090 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.085 | Fly |
| negative regulation of biosynthetic process | GO:0009890 | 277 | 0.084 | |
| meiotic nuclear division | GO:0007126 | 151 | 0.082 | Fly |
| negative regulation of gene expression | GO:0010629 | 387 | 0.080 | |
| morphogenesis of an epithelium | GO:0002009 | 276 | 0.078 | |
| negative regulation of transcription dna templated | GO:0045892 | 237 | 0.071 | |
| asymmetric neuroblast division | GO:0055059 | 33 | 0.067 | |
| spindle assembly | GO:0051225 | 80 | 0.065 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 240 | 0.065 | |
| chromosome segregation | GO:0007059 | 157 | 0.063 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.060 | |
| mitotic nuclear division | GO:0007067 | 213 | 0.058 | |
| meiotic dna double strand break formation | GO:0042138 | 1 | 0.058 | |
| negative regulation of gene expression epigenetic | GO:0045814 | 77 | 0.057 | |
| negative regulation of cell communication | GO:0010648 | 223 | 0.057 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.057 | Fly |
| cell division | GO:0051301 | 248 | 0.056 | |
| centrosome organization | GO:0051297 | 163 | 0.053 | |
| organelle assembly | GO:0070925 | 198 | 0.051 | |
| gene silencing | GO:0016458 | 138 | 0.050 | |
| negative regulation of signaling | GO:0023057 | 219 | 0.049 | |
| neuroblast division | GO:0055057 | 35 | 0.049 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.049 | Fly |
| negative regulation of rna biosynthetic process | GO:1902679 | 240 | 0.046 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.046 | |
| regulation of intracellular signal transduction | GO:1902531 | 236 | 0.045 | |
| embryonic development via the syncytial blastoderm | GO:0001700 | 148 | 0.044 | |
| protein complex biogenesis | GO:0070271 | 201 | 0.043 | |
| pole cell formation | GO:0007279 | 19 | 0.043 | Fly |
| protein modification process | GO:0036211 | 438 | 0.042 | |
| negative regulation of signal transduction | GO:0009968 | 206 | 0.042 | |
| cuticle development | GO:0042335 | 86 | 0.041 | |
| peptidyl amino acid modification | GO:0018193 | 105 | 0.041 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 266 | 0.040 | Fly |
| regulation of cellular ketone metabolic process | GO:0010565 | 3 | 0.039 | |
| spindle organization | GO:0007051 | 253 | 0.038 | |
| positive regulation of rna metabolic process | GO:0051254 | 271 | 0.037 | Fly |
| negative regulation of small gtpase mediated signal transduction | GO:0051058 | 13 | 0.036 | |
| protein complex assembly | GO:0006461 | 200 | 0.036 | |
| ras protein signal transduction | GO:0007265 | 88 | 0.035 | |
| cellular amino acid metabolic process | GO:0006520 | 61 | 0.035 | |
| eye development | GO:0001654 | 323 | 0.034 | |
| tissue morphogenesis | GO:0048729 | 297 | 0.034 | |
| neuroblast proliferation | GO:0007405 | 74 | 0.033 | |
| meiotic dna double strand break formation involved in reciprocal meiotic recombination | GO:0010780 | 1 | 0.032 | |
| growth | GO:0040007 | 359 | 0.032 | |
| regulation of gene silencing | GO:0060968 | 63 | 0.031 | |
| programmed cell death | GO:0012501 | 257 | 0.031 | |
| regulation of mitotic cell cycle | GO:0007346 | 190 | 0.031 | |
| cell proliferation | GO:0008283 | 299 | 0.031 | |
| regulation of gene expression epigenetic | GO:0040029 | 128 | 0.031 | |
| positive regulation of intracellular signal transduction | GO:1902533 | 116 | 0.030 | |
| positive regulation of signaling | GO:0023056 | 243 | 0.030 | |
| regionalization | GO:0003002 | 416 | 0.029 | |
| intracellular signal transduction | GO:0035556 | 300 | 0.028 | |
| tube morphogenesis | GO:0035239 | 191 | 0.028 | |
| tube development | GO:0035295 | 244 | 0.028 | |
| female meiotic division | GO:0007143 | 70 | 0.027 | Fly |
| microtubule organizing center organization | GO:0031023 | 168 | 0.027 | |
| regulation of microtubule based process | GO:0032886 | 49 | 0.027 | |
| negative regulation of response to stimulus | GO:0048585 | 258 | 0.027 | |
| body morphogenesis | GO:0010171 | 2 | 0.027 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.026 | Fly |
| regulation of anatomical structure morphogenesis | GO:0022603 | 242 | 0.026 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.025 | Fly |
| digestive tract development | GO:0048565 | 149 | 0.025 | |
| stem cell proliferation | GO:0072089 | 88 | 0.025 | |
| regulation of small gtpase mediated signal transduction | GO:0051056 | 93 | 0.025 | |
| embryonic morphogenesis | GO:0048598 | 206 | 0.024 | |
| pole cell development | GO:0007277 | 26 | 0.024 | Fly |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 119 | 0.023 | |
| mitotic cell cycle embryonic | GO:0045448 | 38 | 0.023 | |
| cell fate determination | GO:0001709 | 91 | 0.022 | |
| autophagy | GO:0006914 | 108 | 0.022 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.022 | |
| somatic stem cell division | GO:0048103 | 37 | 0.022 | |
| chromatin organization | GO:0006325 | 207 | 0.021 | |
| regulation of chromatin silencing | GO:0031935 | 36 | 0.021 | |
| establishment of organelle localization | GO:0051656 | 122 | 0.021 | |
| regulation of cellular amine metabolic process | GO:0033238 | 3 | 0.021 | |
| regulation of cell fate specification | GO:0042659 | 27 | 0.021 | |
| carboxylic acid metabolic process | GO:0019752 | 92 | 0.021 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.021 | |
| asymmetric stem cell division | GO:0098722 | 49 | 0.020 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 139 | 0.020 | |
| regulation of cell cycle process | GO:0010564 | 181 | 0.020 | |
| chromosome organization | GO:0051276 | 360 | 0.019 | |
| chromatin modification | GO:0016568 | 147 | 0.019 | |
| mitotic sister chromatid segregation | GO:0000070 | 87 | 0.019 | |
| developmental growth | GO:0048589 | 280 | 0.019 | |
| cellular component disassembly | GO:0022411 | 46 | 0.019 | |
| post embryonic appendage morphogenesis | GO:0035120 | 385 | 0.018 | |
| neural precursor cell proliferation | GO:0061351 | 75 | 0.018 | |
| organelle localization | GO:0051640 | 148 | 0.018 | |
| cellular macromolecular complex assembly | GO:0034622 | 153 | 0.018 | |
| compound eye development | GO:0048749 | 307 | 0.018 | |
| wing disc morphogenesis | GO:0007472 | 344 | 0.017 | |
| cellular ketone metabolic process | GO:0042180 | 24 | 0.017 | |
| endomembrane system organization | GO:0010256 | 119 | 0.017 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 118 | 0.017 | |
| appendage development | GO:0048736 | 401 | 0.017 | |
| signal transduction by phosphorylation | GO:0023014 | 107 | 0.017 | |
| epithelial tube morphogenesis | GO:0060562 | 88 | 0.017 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.017 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.017 | |
| neuronal stem cell division | GO:0036445 | 35 | 0.017 | |
| dephosphorylation | GO:0016311 | 51 | 0.017 | |
| chromosome condensation | GO:0030261 | 41 | 0.017 | |
| small molecule metabolic process | GO:0044281 | 305 | 0.016 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.016 | Fly |
| regulation of phosphate metabolic process | GO:0019220 | 210 | 0.016 | |
| oxoacid metabolic process | GO:0043436 | 103 | 0.016 | |
| chromatin silencing | GO:0006342 | 76 | 0.015 | |
| mitotic spindle organization | GO:0007052 | 220 | 0.015 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 130 | 0.015 | |
| egg activation | GO:0007343 | 9 | 0.015 | Fly |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.015 | Fly |
| regulation of organ morphogenesis | GO:2000027 | 78 | 0.015 | |
| organic acid metabolic process | GO:0006082 | 103 | 0.015 | |
| meiotic cell cycle process | GO:1903046 | 132 | 0.015 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.015 | |
| mitotic cell cycle phase transition | GO:0044772 | 138 | 0.014 | |
| positive regulation of molecular function | GO:0044093 | 136 | 0.014 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 145 | 0.014 | |
| cellular response to chemical stimulus | GO:0070887 | 199 | 0.014 | |
| regulation of cell cycle phase transition | GO:1901987 | 130 | 0.014 | |
| appendage morphogenesis | GO:0035107 | 397 | 0.014 | |
| centrosome duplication | GO:0051298 | 121 | 0.014 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 152 | 0.014 | |
| negative regulation of mitotic cell cycle | GO:0045930 | 109 | 0.014 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.014 | |
| negative regulation of cell cycle process | GO:0010948 | 109 | 0.014 | |
| aromatic compound catabolic process | GO:0019439 | 166 | 0.014 | |
| camera type eye development | GO:0043010 | 4 | 0.014 | |
| regulation of molecular function | GO:0065009 | 217 | 0.013 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 204 | 0.013 | Fly |
| negative regulation of cell cycle phase transition | GO:1901988 | 103 | 0.013 | |
| negative regulation of protein complex disassembly | GO:0043242 | 23 | 0.013 | |
| death | GO:0016265 | 284 | 0.013 | |
| cellular amine metabolic process | GO:0044106 | 12 | 0.013 | |
| regulation of cell fate commitment | GO:0010453 | 29 | 0.013 | |
| organic cyclic compound catabolic process | GO:1901361 | 168 | 0.012 | |
| epithelial cell differentiation | GO:0030855 | 322 | 0.012 | |
| respiratory system development | GO:0060541 | 213 | 0.012 | |
| eye morphogenesis | GO:0048592 | 260 | 0.012 | |
| positive regulation of multicellular organismal process | GO:0051240 | 143 | 0.012 | |
| regulation of phosphorus metabolic process | GO:0051174 | 210 | 0.012 | |
| compound eye morphogenesis | GO:0001745 | 249 | 0.012 | |
| single organism catabolic process | GO:0044712 | 228 | 0.012 | |
| dendrite development | GO:0016358 | 204 | 0.012 | |
| response to oxygen containing compound | GO:1901700 | 200 | 0.012 | |
| sister chromatid segregation | GO:0000819 | 92 | 0.012 | |
| small gtpase mediated signal transduction | GO:0007264 | 88 | 0.012 | |
| regulation of anatomical structure size | GO:0090066 | 163 | 0.012 | |
| regulation of apoptotic process | GO:0042981 | 130 | 0.011 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.011 | |
| cell fate specification | GO:0001708 | 71 | 0.011 | |
| g2 dna damage checkpoint | GO:0031572 | 69 | 0.011 | |
| negative regulation of phosphorus metabolic process | GO:0010563 | 45 | 0.011 | |
| phagocytosis | GO:0006909 | 215 | 0.011 | |
| cell cycle phase transition | GO:0044770 | 140 | 0.011 | |
| negative regulation of intracellular signal transduction | GO:1902532 | 57 | 0.011 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.011 | |
| positive regulation of developmental process | GO:0051094 | 143 | 0.011 | |
| gastrulation | GO:0007369 | 70 | 0.011 | |
| imaginal disc derived wing morphogenesis | GO:0007476 | 337 | 0.011 | |
| regulation of cell differentiation | GO:0045595 | 302 | 0.011 | |
| negative regulation of g1 s transition of mitotic cell cycle | GO:2000134 | 13 | 0.011 | |
| fertilization | GO:0009566 | 26 | 0.011 | Fly |
| establishment of localization in cell | GO:0051649 | 402 | 0.011 | |
| histone modification | GO:0016570 | 106 | 0.011 | |
| digestive system development | GO:0055123 | 149 | 0.010 | |
| notch signaling pathway | GO:0007219 | 120 | 0.010 | |
| phosphorylation | GO:0016310 | 294 | 0.010 | |
| regulation of ras protein signal transduction | GO:0046578 | 93 | 0.010 | |
| dendrite morphogenesis | GO:0048813 | 199 | 0.010 | |
| dna conformation change | GO:0071103 | 105 | 0.010 | |
| protein dephosphorylation | GO:0006470 | 27 | 0.010 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 139 | 0.010 | |
| ameboidal type cell migration | GO:0001667 | 151 | 0.010 | |