| chromosome organization | GO:0051276 | 360 | 0.266 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.195 | |
| meiosis i | GO:0007127 | 59 | 0.139 | |
| negative regulation of cell cycle phase transition | GO:1901988 | 103 | 0.123 | |
| phosphorylation | GO:0016310 | 294 | 0.120 | |
| organelle fission | GO:0048285 | 340 | 0.107 | |
| pigment metabolic process | GO:0042440 | 84 | 0.106 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 152 | 0.105 | |
| protein modification process | GO:0036211 | 438 | 0.095 | |
| regulation of phosphorus metabolic process | GO:0051174 | 210 | 0.091 | |
| mitotic spindle organization | GO:0007052 | 220 | 0.089 | |
| lateral inhibition | GO:0046331 | 206 | 0.089 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.081 | |
| nuclear division | GO:0000280 | 332 | 0.078 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 266 | 0.077 | |
| regulation of phosphate metabolic process | GO:0019220 | 210 | 0.065 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.064 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.064 | |
| mitotic dna damage checkpoint | GO:0044773 | 74 | 0.062 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.061 | |
| sister chromatid segregation | GO:0000819 | 92 | 0.060 | |
| cellular protein modification process | GO:0006464 | 438 | 0.059 | |
| meiotic cell cycle process | GO:1903046 | 132 | 0.059 | |
| dendrite morphogenesis | GO:0048813 | 199 | 0.058 | |
| chromatin organization | GO:0006325 | 207 | 0.056 | |
| regulation of multicellular organismal development | GO:2000026 | 414 | 0.053 | |
| histone modification | GO:0016570 | 106 | 0.052 | |
| cell cell signaling involved in cell fate commitment | GO:0045168 | 210 | 0.051 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.047 | |
| response to other organism | GO:0051707 | 293 | 0.046 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.045 | |
| chromatin modification | GO:0016568 | 147 | 0.045 | |
| determination of adult lifespan | GO:0008340 | 137 | 0.045 | |
| negative regulation of signaling | GO:0023057 | 219 | 0.044 | |
| embryonic development via the syncytial blastoderm | GO:0001700 | 148 | 0.043 | |
| spermatid differentiation | GO:0048515 | 114 | 0.043 | |
| proteolysis | GO:0006508 | 192 | 0.042 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.041 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.041 | |
| spindle organization | GO:0007051 | 253 | 0.041 | |
| regulation of cell cycle phase transition | GO:1901987 | 130 | 0.040 | |
| negative regulation of erk1 and erk2 cascade | GO:0070373 | 3 | 0.039 | |
| meiotic cell cycle | GO:0051321 | 171 | 0.038 | |
| establishment or maintenance of cell polarity | GO:0007163 | 167 | 0.038 | |
| regulation of phosphorylation | GO:0042325 | 147 | 0.038 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.038 | Yeast |
| chromosome condensation | GO:0030261 | 41 | 0.037 | |
| response to external biotic stimulus | GO:0043207 | 293 | 0.037 | |
| establishment of localization in cell | GO:0051649 | 402 | 0.037 | |
| regulation of cell differentiation | GO:0045595 | 302 | 0.035 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.035 | |
| signal transduction by phosphorylation | GO:0023014 | 107 | 0.034 | |
| male gamete generation | GO:0048232 | 201 | 0.033 | |
| negative regulation of biosynthetic process | GO:0009890 | 277 | 0.033 | |
| cell cycle checkpoint | GO:0000075 | 95 | 0.033 | |
| protein k48 linked ubiquitination | GO:0070936 | 3 | 0.032 | |
| regulation of gene expression epigenetic | GO:0040029 | 128 | 0.032 | |
| positive regulation of phosphorylation | GO:0042327 | 87 | 0.032 | |
| g2 dna damage checkpoint | GO:0031572 | 69 | 0.031 | |
| defense response to other organism | GO:0098542 | 225 | 0.031 | |
| meiotic nuclear division | GO:0007126 | 151 | 0.031 | |
| negative regulation of mitotic cell cycle phase transition | GO:1901991 | 103 | 0.030 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.030 | |
| mitotic cell cycle checkpoint | GO:0007093 | 88 | 0.029 | |
| aging | GO:0007568 | 143 | 0.029 | |
| peptidyl amino acid modification | GO:0018193 | 105 | 0.028 | |
| protein phosphorylation | GO:0006468 | 169 | 0.028 | |
| dendrite development | GO:0016358 | 204 | 0.028 | |
| regulation of transport | GO:0051049 | 181 | 0.028 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 139 | 0.027 | |
| mitotic nuclear division | GO:0007067 | 213 | 0.027 | |
| catabolic process | GO:0009056 | 409 | 0.027 | |
| mapk cascade | GO:0000165 | 107 | 0.027 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.027 | |
| regulation of small gtpase mediated signal transduction | GO:0051056 | 93 | 0.027 | |
| regulation of mitotic cell cycle | GO:0007346 | 190 | 0.026 | |
| regulation of nervous system development | GO:0051960 | 248 | 0.026 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 0 | 0.025 | |
| mitotic sister chromatid segregation | GO:0000070 | 87 | 0.025 | |
| single organism behavior | GO:0044708 | 391 | 0.024 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 240 | 0.024 | |
| imaginal disc derived wing morphogenesis | GO:0007476 | 337 | 0.024 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 130 | 0.024 | |
| mitotic cell cycle phase transition | GO:0044772 | 138 | 0.024 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 270 | 0.024 | |
| nuclear import | GO:0051170 | 51 | 0.024 | |
| single organism intracellular transport | GO:1902582 | 207 | 0.024 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.023 | |
| regulation of erk1 and erk2 cascade | GO:0070372 | 39 | 0.023 | |
| positive regulation of catabolic process | GO:0009896 | 105 | 0.023 | |
| carboxylic acid metabolic process | GO:0019752 | 92 | 0.023 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.023 | |
| response to biotic stimulus | GO:0009607 | 294 | 0.022 | |
| regulation of mapk cascade | GO:0043408 | 92 | 0.022 | |
| regulation of molecular function | GO:0065009 | 217 | 0.021 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.021 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 119 | 0.021 | |
| cellular amino acid metabolic process | GO:0006520 | 61 | 0.021 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 145 | 0.021 | |
| dephosphorylation | GO:0016311 | 51 | 0.021 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.020 | |
| negative regulation of intracellular signal transduction | GO:1902532 | 57 | 0.020 | |
| death | GO:0016265 | 284 | 0.020 | |
| oxoacid metabolic process | GO:0043436 | 103 | 0.020 | |
| mitochondrial membrane organization | GO:0007006 | 3 | 0.020 | |
| negative regulation of phosphate metabolic process | GO:0045936 | 45 | 0.020 | |
| regulation of ras protein signal transduction | GO:0046578 | 93 | 0.020 | |
| positive regulation of protein metabolic process | GO:0051247 | 128 | 0.019 | |
| protein localization to organelle | GO:0033365 | 82 | 0.019 | |
| positive regulation of catalytic activity | GO:0043085 | 118 | 0.019 | |
| gland development | GO:0048732 | 191 | 0.019 | |
| regulation of localization | GO:0032879 | 275 | 0.019 | |
| post embryonic appendage morphogenesis | GO:0035120 | 385 | 0.019 | |
| neurological system process | GO:0050877 | 358 | 0.018 | |
| body morphogenesis | GO:0010171 | 2 | 0.018 | |
| intracellular transport | GO:0046907 | 228 | 0.018 | |
| negative regulation of mitotic cell cycle | GO:0045930 | 109 | 0.018 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.018 | |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.018 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.018 | |
| regulation of cellular amine metabolic process | GO:0033238 | 3 | 0.018 | |
| cellular ketone metabolic process | GO:0042180 | 24 | 0.018 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 3 | 0.018 | |
| cellular amine metabolic process | GO:0044106 | 12 | 0.018 | |
| dna integrity checkpoint | GO:0031570 | 81 | 0.018 | |
| positive regulation of signaling | GO:0023056 | 243 | 0.017 | |
| cell cycle phase transition | GO:0044770 | 140 | 0.017 | |
| regulation of embryonic development | GO:0045995 | 68 | 0.017 | |
| mitotic dna integrity checkpoint | GO:0044774 | 75 | 0.017 | |
| covalent chromatin modification | GO:0016569 | 106 | 0.017 | |
| organelle assembly | GO:0070925 | 198 | 0.017 | |
| chromosome segregation | GO:0007059 | 157 | 0.017 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 139 | 0.017 | |
| regulation of anatomical structure morphogenesis | GO:0022603 | 242 | 0.017 | |
| cellular response to dna damage stimulus | GO:0006974 | 223 | 0.017 | |
| cell proliferation | GO:0008283 | 299 | 0.017 | |
| endocytosis | GO:0006897 | 310 | 0.016 | |
| larval development | GO:0002164 | 104 | 0.016 | |
| erk1 and erk2 cascade | GO:0070371 | 39 | 0.016 | |
| negative regulation of rna metabolic process | GO:0051253 | 251 | 0.016 | |
| positive regulation of neuron projection regeneration | GO:0070572 | 3 | 0.016 | |
| protein complex biogenesis | GO:0070271 | 201 | 0.016 | |
| cellular catabolic process | GO:0044248 | 372 | 0.016 | |
| establishment of protein localization | GO:0045184 | 163 | 0.016 | |
| negative regulation of phosphorylation | GO:0042326 | 35 | 0.016 | |
| positive regulation of mapk cascade | GO:0043410 | 63 | 0.016 | |
| organonitrogen compound metabolic process | GO:1901564 | 318 | 0.015 | |
| cellular macromolecular complex assembly | GO:0034622 | 153 | 0.015 | Yeast |
| regulation of cellular localization | GO:0060341 | 136 | 0.015 | |
| jnk cascade | GO:0007254 | 50 | 0.015 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 204 | 0.015 | |
| chromosome organization involved in meiosis | GO:0070192 | 10 | 0.015 | |
| epithelial cell development | GO:0002064 | 274 | 0.015 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 118 | 0.015 | |
| negative regulation of transcription factor import into nucleus | GO:0042992 | 4 | 0.015 | |
| response to wounding | GO:0009611 | 94 | 0.015 | |
| regulation of chromatin modification | GO:1903308 | 28 | 0.014 | |
| regulation of cellular catabolic process | GO:0031329 | 157 | 0.014 | |
| multicellular organismal aging | GO:0010259 | 140 | 0.014 | |
| protein catabolic process | GO:0030163 | 101 | 0.014 | |
| negative regulation of gene expression | GO:0010629 | 387 | 0.014 | |
| developmental growth | GO:0048589 | 280 | 0.014 | |
| proteasomal protein catabolic process | GO:0010498 | 59 | 0.014 | |
| stem cell development | GO:0048864 | 79 | 0.014 | |
| single organism biosynthetic process | GO:0044711 | 206 | 0.014 | |
| regulation of cell development | GO:0060284 | 215 | 0.014 | |
| protein transport | GO:0015031 | 155 | 0.014 | |
| regulation of proteolysis | GO:0030162 | 87 | 0.013 | |
| regulation of hydrolase activity | GO:0051336 | 97 | 0.013 | |
| salivary gland morphogenesis | GO:0007435 | 145 | 0.013 | |
| neural precursor cell proliferation | GO:0061351 | 75 | 0.013 | |
| response to organic substance | GO:0010033 | 284 | 0.013 | |
| regulation of catabolic process | GO:0009894 | 170 | 0.013 | |
| gene silencing | GO:0016458 | 138 | 0.013 | |
| neuroblast proliferation | GO:0007405 | 74 | 0.013 | |
| mitotic g2 dna damage checkpoint | GO:0007095 | 69 | 0.013 | |
| cell death | GO:0008219 | 279 | 0.013 | |
| learning or memory | GO:0007611 | 141 | 0.013 | |
| dna damage checkpoint | GO:0000077 | 78 | 0.013 | |
| positive regulation of transcription dna templated | GO:0045893 | 266 | 0.013 | |
| cellular macromolecule localization | GO:0070727 | 220 | 0.013 | |
| response to endogenous stimulus | GO:0009719 | 119 | 0.013 | |
| organic acid metabolic process | GO:0006082 | 103 | 0.012 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.012 | |
| formation of a compartment boundary | GO:0060288 | 4 | 0.012 | |
| phosphatidylethanolamine metabolic process | GO:0046337 | 1 | 0.012 | |
| protein complex assembly | GO:0006461 | 200 | 0.012 | |
| amine metabolic process | GO:0009308 | 12 | 0.012 | |
| negative regulation of cell communication | GO:0010648 | 223 | 0.012 | |
| protein import | GO:0017038 | 55 | 0.012 | |
| negative regulation of signal transduction | GO:0009968 | 206 | 0.012 | |
| negative regulation of response to stimulus | GO:0048585 | 258 | 0.012 | |
| positive regulation of chromatin silencing at telomere | GO:0031940 | 2 | 0.012 | |
| regulation of chromosome organization | GO:0033044 | 64 | 0.012 | |
| single organism catabolic process | GO:0044712 | 228 | 0.012 | |
| antimicrobial humoral response | GO:0019730 | 99 | 0.012 | |
| cell division | GO:0051301 | 248 | 0.012 | |
| somatic stem cell division | GO:0048103 | 37 | 0.011 | |
| positive regulation of intracellular signal transduction | GO:1902533 | 116 | 0.011 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.011 | |
| regulation of growth | GO:0040008 | 233 | 0.011 | |
| response to radiation | GO:0009314 | 155 | 0.011 | |
| apoptotic process | GO:0006915 | 159 | 0.011 | |
| phagocytosis | GO:0006909 | 215 | 0.011 | |
| regulation of cellular response to stress | GO:0080135 | 89 | 0.011 | |
| appendage development | GO:0048736 | 401 | 0.011 | |
| sister chromatid cohesion | GO:0007062 | 18 | 0.011 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.011 | |
| positive regulation of cellular catabolic process | GO:0031331 | 95 | 0.011 | |
| regulation of protein phosphorylation | GO:0001932 | 64 | 0.011 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.011 | |
| membrane organization | GO:0061024 | 112 | 0.011 | |
| modification dependent protein catabolic process | GO:0019941 | 78 | 0.011 | |
| endomembrane system organization | GO:0010256 | 119 | 0.010 | |
| multi organism behavior | GO:0051705 | 175 | 0.010 | |
| reproductive system development | GO:0061458 | 74 | 0.010 | |
| negative regulation of wnt signaling pathway | GO:0030178 | 28 | 0.010 | |
| positive regulation of organelle organization | GO:0010638 | 65 | 0.010 | |
| cellular response to organic substance | GO:0071310 | 132 | 0.010 | |
| cell adhesion | GO:0007155 | 136 | 0.010 | |