| cellular protein modification process | GO:0006464 | 438 | 0.496 | |
| protein modification process | GO:0036211 | 438 | 0.186 | |
| chromosome organization | GO:0051276 | 360 | 0.151 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.147 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 152 | 0.136 | Worm |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.094 | |
| histone modification | GO:0016570 | 106 | 0.072 | |
| nuclear division | GO:0000280 | 332 | 0.068 | Worm |
| vesicle mediated transport | GO:0016192 | 381 | 0.060 | Worm |
| cellular macromolecular complex assembly | GO:0034622 | 153 | 0.057 | |
| formation of a compartment boundary | GO:0060288 | 4 | 0.050 | |
| cell proliferation | GO:0008283 | 299 | 0.044 | Worm |
| negative regulation of rna metabolic process | GO:0051253 | 251 | 0.043 | |
| regulation of mitotic cell cycle | GO:0007346 | 190 | 0.040 | |
| membrane organization | GO:0061024 | 112 | 0.036 | |
| mitotic spindle organization | GO:0007052 | 220 | 0.035 | |
| microtubule organizing center organization | GO:0031023 | 168 | 0.035 | |
| regulation of cell cycle process | GO:0010564 | 181 | 0.034 | Worm |
| regulation of meiosis | GO:0040020 | 3 | 0.032 | Worm |
| regulation of rac gtpase activity | GO:0032314 | 1 | 0.031 | |
| single organism membrane organization | GO:0044802 | 93 | 0.030 | |
| spindle organization | GO:0007051 | 253 | 0.027 | |
| covalent chromatin modification | GO:0016569 | 106 | 0.026 | |
| phagocytosis | GO:0006909 | 215 | 0.025 | |
| mitotic g2 m transition checkpoint | GO:0044818 | 70 | 0.024 | |
| apoptotic process | GO:0006915 | 159 | 0.024 | |
| prostanoid biosynthetic process | GO:0046457 | 1 | 0.023 | |
| dna templated transcription initiation | GO:0006352 | 25 | 0.023 | |
| negative regulation of axonogenesis | GO:0050771 | 5 | 0.023 | |
| chromatin organization | GO:0006325 | 207 | 0.023 | |
| mrna processing | GO:0006397 | 104 | 0.023 | Human Yeast |
| protein neddylation | GO:0045116 | 5 | 0.021 | |
| negative regulation of biosynthetic process | GO:0009890 | 277 | 0.021 | |
| centrosome organization | GO:0051297 | 163 | 0.021 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.020 | Worm |
| aging | GO:0007568 | 143 | 0.020 | Worm |
| cell motility | GO:0048870 | 251 | 0.020 | Worm |
| positive regulation of transcription from rna polymerase i promoter | GO:0045943 | 3 | 0.020 | |
| dna metabolic process | GO:0006259 | 227 | 0.020 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.020 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.020 | Human |
| programmed cell death | GO:0012501 | 257 | 0.020 | |
| immune system process | GO:0002376 | 347 | 0.019 | |
| cell death | GO:0008219 | 279 | 0.019 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.019 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.018 | Human |
| regulation of cell differentiation | GO:0045595 | 302 | 0.018 | |
| regulation of cell death | GO:0010941 | 173 | 0.017 | |
| endocytosis | GO:0006897 | 310 | 0.017 | Worm |
| regulation of multicellular organismal development | GO:2000026 | 414 | 0.017 | |
| regulation of striated muscle contraction | GO:0006942 | 2 | 0.017 | |
| regulation of apoptotic process | GO:0042981 | 130 | 0.017 | |
| regulation of cell development | GO:0060284 | 215 | 0.016 | |
| left right axis specification | GO:0070986 | 1 | 0.016 | |
| positive regulation of rho protein signal transduction | GO:0035025 | 4 | 0.016 | |
| regulation of catalytic activity | GO:0050790 | 185 | 0.015 | |
| protein destabilization | GO:0031648 | 2 | 0.015 | |
| trna transcription from rna polymerase iii promoter | GO:0042797 | 1 | 0.015 | |
| localization of cell | GO:0051674 | 257 | 0.014 | Worm |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 265 | 0.014 | |
| regulation of immune system process | GO:0002682 | 176 | 0.014 | |
| septin cytoskeleton organization | GO:0032185 | 1 | 0.014 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 106 | 0.014 | |
| cell chemotaxis involved in malpighian tubule morphogenesis | GO:0061352 | 3 | 0.014 | |
| mitotic g2 dna damage checkpoint | GO:0007095 | 69 | 0.014 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.013 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.013 | |
| cellular response to dna damage stimulus | GO:0006974 | 223 | 0.012 | |
| chromatin modification | GO:0016568 | 147 | 0.012 | |
| negative regulation of response to stimulus | GO:0048585 | 258 | 0.012 | |
| regulation of cdc42 protein signal transduction | GO:0032489 | 3 | 0.012 | |
| modification of morphology or physiology of other organism | GO:0035821 | 1 | 0.011 | |
| mrna metabolic process | GO:0016071 | 124 | 0.011 | Human Yeast |
| mitotic nuclear division | GO:0007067 | 213 | 0.011 | |
| positive regulation of binding | GO:0051099 | 4 | 0.011 | |
| negative regulation of transcription factor import into nucleus | GO:0042992 | 4 | 0.011 | |
| protein localization | GO:0008104 | 284 | 0.011 | |
| response to oxidative stress | GO:0006979 | 86 | 0.011 | |
| cell migration | GO:0016477 | 238 | 0.011 | Worm |
| establishment of protein localization | GO:0045184 | 163 | 0.011 | |
| regulation of cell proliferation | GO:0042127 | 163 | 0.010 | Worm |
| negative regulation of cell cycle | GO:0045786 | 116 | 0.010 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.010 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 204 | 0.010 | |
| histone lysine methylation | GO:0034968 | 32 | 0.010 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 261 | 0.010 | |
