| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 378 | 0.230 | |
| regulation of phosphate metabolic process | GO:0019220 | 210 | 0.207 | |
| positive regulation of transcription dna templated | GO:0045893 | 266 | 0.199 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 130 | 0.146 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 332 | 0.115 | |
| protein modification process | GO:0036211 | 438 | 0.106 | |
| cellular protein modification process | GO:0006464 | 438 | 0.091 | |
| regulation of phosphorus metabolic process | GO:0051174 | 210 | 0.089 | |
| meiotic cell cycle | GO:0051321 | 171 | 0.089 | |
| organelle assembly | GO:0070925 | 198 | 0.084 | |
| signal transduction by phosphorylation | GO:0023014 | 107 | 0.074 | |
| regulation of localization | GO:0032879 | 275 | 0.073 | |
| organelle fission | GO:0048285 | 340 | 0.064 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 368 | 0.064 | |
| positive regulation of gene expression | GO:0010628 | 290 | 0.064 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 283 | 0.062 | |
| phosphorylation | GO:0016310 | 294 | 0.060 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 266 | 0.060 | |
| regulation of intracellular signal transduction | GO:1902531 | 236 | 0.059 | |
| positive regulation of biosynthetic process | GO:0009891 | 316 | 0.055 | |
| positive regulation of signal transduction | GO:0009967 | 223 | 0.052 | |
| regionalization | GO:0003002 | 416 | 0.048 | |
| protein complex biogenesis | GO:0070271 | 201 | 0.048 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 266 | 0.046 | |
| intracellular signal transduction | GO:0035556 | 300 | 0.045 | |
| positive regulation of rna metabolic process | GO:0051254 | 271 | 0.045 | |
| dna integrity checkpoint | GO:0031570 | 81 | 0.044 | |
| neural precursor cell proliferation | GO:0061351 | 75 | 0.044 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 354 | 0.042 | |
| nuclear division | GO:0000280 | 332 | 0.041 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 316 | 0.040 | |
| regulation of phosphorylation | GO:0042325 | 147 | 0.039 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 405 | 0.036 | |
| regulation of protein localization | GO:0032880 | 76 | 0.035 | |
| reproductive structure development | GO:0048608 | 74 | 0.035 | |
| mapk cascade | GO:0000165 | 107 | 0.035 | |
| positive regulation of response to stimulus | GO:0048584 | 323 | 0.034 | |
| regulation of cell cycle phase transition | GO:1901987 | 130 | 0.033 | |
| endocytosis | GO:0006897 | 310 | 0.033 | |
| gonad development | GO:0008406 | 50 | 0.032 | |
| vesicle mediated transport | GO:0016192 | 381 | 0.031 | |
| histone lysine demethylation | GO:0070076 | 6 | 0.031 | |
| catabolic process | GO:0009056 | 409 | 0.031 | |
| negative regulation of cellular metabolic process | GO:0031324 | 382 | 0.030 | |
| sex differentiation | GO:0007548 | 81 | 0.030 | |
| positive regulation of signaling | GO:0023056 | 243 | 0.030 | |
| cellular response to dna damage stimulus | GO:0006974 | 223 | 0.030 | |
| negative regulation of signal transduction | GO:0009968 | 206 | 0.029 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 204 | 0.029 | |
| organic substance transport | GO:0071702 | 257 | 0.029 | |
| cell cycle phase transition | GO:0044770 | 140 | 0.028 | |
| cellular macromolecule catabolic process | GO:0044265 | 136 | 0.027 | |
| positive regulation of phosphorylation | GO:0042327 | 87 | 0.026 | |
| mitotic g2 dna damage checkpoint | GO:0007095 | 69 | 0.026 | |
| regulation of cell cycle | GO:0051726 | 291 | 0.025 | |
| cell proliferation | GO:0008283 | 299 | 0.025 | |
| stem cell proliferation | GO:0072089 | 88 | 0.024 | |
| dna damage checkpoint | GO:0000077 | 78 | 0.024 | |
| positive regulation of cellular component organization | GO:0051130 | 156 | 0.024 | |
| organic substance catabolic process | GO:1901575 | 308 | 0.024 | |
| organelle inheritance | GO:0048308 | 2 | 0.023 | |
| regulation of transport | GO:0051049 | 181 | 0.023 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 139 | 0.023 | |
| negative regulation of phosphorus metabolic process | GO:0010563 | 45 | 0.023 | |
| macromolecule catabolic process | GO:0009057 | 161 | 0.022 | |
| development of primary sexual characteristics | GO:0045137 | 50 | 0.022 | |
| intracellular transport | GO:0046907 | 228 | 0.022 | |
| adult behavior | GO:0030534 | 137 | 0.021 | |
| establishment of protein localization | GO:0045184 | 163 | 0.021 | |
| heterocycle catabolic process | GO:0046700 | 166 | 0.021 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 152 | 0.021 | |
| chromosome segregation | GO:0007059 | 157 | 0.020 | |
| regulation of hemocyte proliferation | GO:0035206 | 37 | 0.020 | |
| response to abiotic stimulus | GO:0009628 | 341 | 0.020 | |
| positive regulation of cell communication | GO:0010647 | 250 | 0.020 | |
| g2 dna damage checkpoint | GO:0031572 | 69 | 0.019 | |
| negative regulation of mitotic cell cycle phase transition | GO:1901991 | 103 | 0.019 | |
| protein localization | GO:0008104 | 284 | 0.019 | |
| ras protein signal transduction | GO:0007265 | 88 | 0.019 | |
| negative regulation of cell cycle phase transition | GO:1901988 | 103 | 0.018 | |
| convergent extension | GO:0060026 | 2 | 0.018 | |
| regulation of multicellular organismal development | GO:2000026 | 414 | 0.018 | |
| appendage development | GO:0048736 | 401 | 0.018 | |
| maintenance of location | GO:0051235 | 73 | 0.018 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 139 | 0.018 | |
| establishment of localization in cell | GO:0051649 | 402 | 0.017 | |
| defense response | GO:0006952 | 300 | 0.017 | |
| formation of a compartment boundary | GO:0060288 | 4 | 0.017 | |
| regulation of response to stress | GO:0080134 | 200 | 0.016 | |
| macromolecular complex assembly | GO:0065003 | 256 | 0.016 | |
| regulation of establishment of protein localization | GO:0070201 | 61 | 0.016 | |
| blastoderm segmentation | GO:0007350 | 159 | 0.015 | |
| reproductive system development | GO:0061458 | 74 | 0.015 | |
| diterpenoid biosynthetic process | GO:0016102 | 1 | 0.015 | |
| regulation of cell proliferation | GO:0042127 | 163 | 0.015 | |
| regulation of cellular component biogenesis | GO:0044087 | 201 | 0.015 | |
| segmentation | GO:0035282 | 207 | 0.015 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 270 | 0.015 | |
| extrinsic apoptotic signaling pathway | GO:0097191 | 1 | 0.015 | |
| regulation of cellular protein metabolic process | GO:0032268 | 243 | 0.015 | |
| response to wounding | GO:0009611 | 94 | 0.014 | |
| chromosome organization | GO:0051276 | 360 | 0.014 | |
| regulation of protein metabolic process | GO:0051246 | 256 | 0.014 | |
| regulation of translation | GO:0006417 | 56 | 0.014 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 165 | 0.014 | |
| negative regulation of phosphate metabolic process | GO:0045936 | 45 | 0.014 | |
| regulation of ras protein signal transduction | GO:0046578 | 93 | 0.013 | |
| cilium assembly | GO:0042384 | 38 | 0.013 | |
| small gtpase mediated signal transduction | GO:0007264 | 88 | 0.013 | |
| mitotic dna damage checkpoint | GO:0044773 | 74 | 0.013 | |
| nucleobase containing compound catabolic process | GO:0034655 | 165 | 0.013 | |
| regulation of molecular function | GO:0065009 | 217 | 0.013 | |
| secretion by cell | GO:0032940 | 101 | 0.013 | |
| multicellular organismal aging | GO:0010259 | 140 | 0.013 | |
| response to biotic stimulus | GO:0009607 | 294 | 0.013 | |
| enzyme linked receptor protein signaling pathway | GO:0007167 | 179 | 0.012 | |
| epithelial cell differentiation | GO:0030855 | 322 | 0.012 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 277 | 0.012 | |
| nitric oxide metabolic process | GO:0046209 | 1 | 0.012 | |
| actin cytoskeleton organization | GO:0030036 | 206 | 0.012 | |
| cell maturation | GO:0048469 | 144 | 0.012 | |
| homeostatic process | GO:0042592 | 199 | 0.012 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.012 | |
| reactive nitrogen species metabolic process | GO:2001057 | 0 | 0.012 | |
| morphogenesis of an epithelium | GO:0002009 | 276 | 0.012 | |
| mrna metabolic process | GO:0016071 | 124 | 0.012 | |
| gland development | GO:0048732 | 191 | 0.012 | |
| mitotic dna integrity checkpoint | GO:0044774 | 75 | 0.012 | |
| defense response to other organism | GO:0098542 | 225 | 0.011 | |
| neuroblast proliferation | GO:0007405 | 74 | 0.011 | |
| phagocytosis | GO:0006909 | 215 | 0.011 | |
| protein targeting | GO:0006605 | 64 | 0.011 | |
| positive regulation of neuron projection regeneration | GO:0070572 | 3 | 0.011 | |
| aromatic compound catabolic process | GO:0019439 | 166 | 0.011 | |
| anterior posterior axis specification | GO:0009948 | 109 | 0.011 | |
| death | GO:0016265 | 284 | 0.011 | |
| cellular catabolic process | GO:0044248 | 372 | 0.011 | |
| cilium morphogenesis | GO:0060271 | 39 | 0.011 | |
| chromatin modification | GO:0016568 | 147 | 0.011 | |
| mitotic nuclear division | GO:0007067 | 213 | 0.011 | |
| mitochondrial membrane organization | GO:0007006 | 3 | 0.011 | |
| negative regulation of response to stimulus | GO:0048585 | 258 | 0.011 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 119 | 0.011 | |
| regulation of cell cycle process | GO:0010564 | 181 | 0.011 | |
| regulation of secretion by cell | GO:1903530 | 39 | 0.010 | |
| sister chromatid segregation | GO:0000819 | 92 | 0.010 | |
| cell cycle checkpoint | GO:0000075 | 95 | 0.010 | |
| regulation of erk1 and erk2 cascade | GO:0070372 | 39 | 0.010 | |
| appendage morphogenesis | GO:0035107 | 397 | 0.010 | |
| single organism intracellular transport | GO:1902582 | 207 | 0.010 | |
| negative regulation of protein binding | GO:0032091 | 1 | 0.010 | |
| negative regulation of cell death | GO:0060548 | 81 | 0.010 | |