| cellular amino acid metabolic process | GO:0006520 | 116 | 0.752 | |
| small molecule catabolic process | GO:0044282 | 92 | 0.453 | |
| carboxylic acid catabolic process | GO:0046395 | 71 | 0.411 | |
| cellular amino acid catabolic process | GO:0009063 | 31 | 0.381 | |
| oxidation reduction process | GO:0055114 | 396 | 0.358 | |
| glutamine family amino acid metabolic process | GO:0009064 | 17 | 0.203 | |
| organic acid catabolic process | GO:0016054 | 71 | 0.195 | |
| mitochondrion organization | GO:0007005 | 156 | 0.179 | |
| alpha amino acid catabolic process | GO:1901606 | 26 | 0.174 | |
| single organism carbohydrate metabolic process | GO:0044723 | 193 | 0.148 | |
| monocarboxylic acid metabolic process | GO:0032787 | 185 | 0.116 | |
| response to abiotic stimulus | GO:0009628 | 336 | 0.107 | |
| organic hydroxy compound metabolic process | GO:1901615 | 147 | 0.091 | |
| protein oligomerization | GO:0051259 | 173 | 0.075 | |
| coenzyme metabolic process | GO:0006732 | 65 | 0.071 | |
| alpha amino acid metabolic process | GO:1901605 | 72 | 0.071 | |
| amine metabolic process | GO:0009308 | 44 | 0.069 | |
| cofactor metabolic process | GO:0051186 | 87 | 0.066 | |
| fatty acid metabolic process | GO:0006631 | 115 | 0.062 | |
| carbohydrate metabolic process | GO:0005975 | 207 | 0.061 | |
| cellular ketone metabolic process | GO:0042180 | 80 | 0.058 | |
| cellular macromolecule catabolic process | GO:0044265 | 380 | 0.058 | |
| system process | GO:0003008 | 349 | 0.055 | |
| response to oxygen containing compound | GO:1901700 | 369 | 0.055 | |
| small molecule biosynthetic process | GO:0044283 | 157 | 0.050 | |
| protein homooligomerization | GO:0051260 | 100 | 0.049 | |
| protein catabolic process | GO:0030163 | 325 | 0.049 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 6 | 0.048 | |
| response to hypoxia | GO:0001666 | 96 | 0.047 | |
| post embryonic development | GO:0009791 | 2 | 0.046 | |
| response to lipid | GO:0033993 | 206 | 0.044 | |
| cellular protein complex assembly | GO:0043623 | 188 | 0.044 | |
| mitochondrial rna metabolic process | GO:0000959 | 15 | 0.043 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 213 | 0.042 | |
| protein localization to mitochondrion | GO:0070585 | 25 | 0.041 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 200 | 0.041 | |
| cellular lipid metabolic process | GO:0044255 | 303 | 0.041 | |
| translation | GO:0006412 | 132 | 0.040 | |
| positive regulation of hydrolase activity | GO:0051345 | 331 | 0.038 | |
| secretion | GO:0046903 | 254 | 0.038 | |
| organic acid biosynthetic process | GO:0016053 | 97 | 0.038 | |
| steroid metabolic process | GO:0008202 | 94 | 0.036 | |
| sulfate transmembrane transport | GO:1902358 | 3 | 0.033 | |
| cellular response to dna damage stimulus | GO:0006974 | 379 | 0.033 | |
| alcohol metabolic process | GO:0006066 | 114 | 0.033 | |
| mitochondrial respiratory chain complex assembly | GO:0033108 | 23 | 0.032 | |
| response to axon injury | GO:0048678 | 1 | 0.032 | |
| response to organic cyclic compound | GO:0014070 | 204 | 0.032 | |
| lipid biosynthetic process | GO:0008610 | 177 | 0.030 | |
| regulation of endopeptidase activity | GO:0052548 | 170 | 0.030 | |
| regulation of oxidoreductase activity | GO:0051341 | 43 | 0.030 | |
| regulation of apoptotic signaling pathway | GO:2001233 | 175 | 0.029 | |
| cellular amine metabolic process | GO:0044106 | 41 | 0.028 | |
| dicarboxylic acid metabolic process | GO:0043648 | 29 | 0.028 | |
| branched chain amino acid catabolic process | GO:0009083 | 4 | 0.028 | |
| regulation of proteolysis | GO:0030162 | 293 | 0.027 | |
| positive regulation of cell death | GO:0010942 | 263 | 0.027 | |
| organophosphate catabolic process | GO:0046434 | 430 | 0.026 | |
| cellular response to oxidative stress | GO:0034599 | 85 | 0.026 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 244 | 0.026 | |
| cellular amino acid biosynthetic process | GO:0008652 | 30 | 0.026 | |
| protein processing | GO:0016485 | 226 | 0.026 | |
| purine containing compound catabolic process | GO:0072523 | 411 | 0.025 | |
| single organism cellular localization | GO:1902580 | 332 | 0.025 | |
| response to organonitrogen compound | GO:0010243 | 156 | 0.025 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 50 | 0.025 | |
| protein import | GO:0017038 | 130 | 0.024 | |
| purine ribonucleotide biosynthetic process | GO:0009152 | 79 | 0.024 | |
| response to hormone | GO:0009725 | 175 | 0.024 | |
| positive regulation of programmed cell death | GO:0043068 | 249 | 0.023 | |
| response to cytokine | GO:0034097 | 232 | 0.023 | |
| lipid modification | GO:0030258 | 84 | 0.023 | |
| response to nitrogen compound | GO:1901698 | 184 | 0.022 | |
| ribonucleotide catabolic process | GO:0009261 | 405 | 0.022 | |
| secretion by cell | GO:0032940 | 226 | 0.022 | |
| negative regulation of protein kinase activity | GO:0006469 | 98 | 0.022 | |
| positive regulation of developmental process | GO:0051094 | 314 | 0.022 | |
| oxidoreduction coenzyme metabolic process | GO:0006733 | 19 | 0.022 | |
| regulation of transferase activity | GO:0051338 | 355 | 0.022 | |
| response to wounding | GO:0009611 | 168 | 0.021 | |
| negative regulation of protein metabolic process | GO:0051248 | 391 | 0.021 | |
| positive regulation of apoptotic process | GO:0043065 | 246 | 0.021 | |
| response to oxidative stress | GO:0006979 | 121 | 0.021 | |
| nucleotide biosynthetic process | GO:0009165 | 109 | 0.021 | |
| lipid metabolic process | GO:0006629 | 381 | 0.021 | |
| carboxylic acid transport | GO:0046942 | 63 | 0.021 | |
| cellular response to cytokine stimulus | GO:0071345 | 181 | 0.021 | |
| intracellular protein transport | GO:0006886 | 270 | 0.020 | |
| dna repair | GO:0006281 | 198 | 0.020 | |
| response to peptide | GO:1901652 | 65 | 0.020 | |
| regulation of immune response | GO:0050776 | 201 | 0.020 | |
| regulation of cysteine type endopeptidase activity involved in apoptotic process | GO:0043281 | 116 | 0.020 | |
| ncrna metabolic process | GO:0034660 | 108 | 0.020 | |
| regulation of protein kinase activity | GO:0045859 | 289 | 0.019 | |
| carboxylic acid biosynthetic process | GO:0046394 | 97 | 0.019 | |
| positive regulation of purine nucleotide biosynthetic process | GO:1900373 | 38 | 0.019 | |
| regulation of peptidase activity | GO:0052547 | 180 | 0.018 | |
| chemical homeostasis | GO:0048878 | 306 | 0.018 | |
| negative regulation of cell death | GO:0060548 | 345 | 0.018 | |
| mitochondrial transport | GO:0006839 | 60 | 0.018 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 353 | 0.018 | |
| positive regulation of proteolysis | GO:0045862 | 142 | 0.018 | |
| spermatid differentiation | GO:0048515 | 4 | 0.018 | |
| response to oxygen levels | GO:0070482 | 100 | 0.018 | |
| negative regulation of intracellular signal transduction | GO:1902532 | 183 | 0.017 | |
| negative regulation of catalytic activity | GO:0043086 | 335 | 0.017 | |
| regulation of cell growth | GO:0001558 | 135 | 0.017 | |
| regulation of kinase activity | GO:0043549 | 314 | 0.017 | |
| ion transmembrane transport | GO:0034220 | 338 | 0.017 | |
| regulation of protein processing | GO:0070613 | 150 | 0.017 | |
| cellular macromolecular complex assembly | GO:0034622 | 324 | 0.017 | |
| apoptotic signaling pathway | GO:0097190 | 268 | 0.017 | |
| regulation of defense response | GO:0031347 | 154 | 0.017 | |
| positive regulation of cyclic nucleotide biosynthetic process | GO:0030804 | 38 | 0.017 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 392 | 0.017 | |
| immune response | GO:0006955 | 307 | 0.017 | |
| positive regulation of catabolic process | GO:0009896 | 310 | 0.017 | |
| negative regulation of transferase activity | GO:0051348 | 124 | 0.016 | |
| purine ribonucleotide catabolic process | GO:0009154 | 404 | 0.016 | |
| lipid catabolic process | GO:0016042 | 84 | 0.016 | |
| organophosphate biosynthetic process | GO:0090407 | 163 | 0.016 | |
| protein homotetramerization | GO:0051289 | 28 | 0.016 | |
| regulation of cellular amine metabolic process | GO:0033238 | 11 | 0.016 | |
| positive regulation of purine nucleotide metabolic process | GO:1900544 | 227 | 0.016 | |
| nucleotide catabolic process | GO:0009166 | 408 | 0.016 | |
| protein localization to organelle | GO:0033365 | 280 | 0.016 | |
| oogenesis | GO:0048477 | 2 | 0.016 | |
| immune effector process | GO:0002252 | 159 | 0.016 | |
| response to hyperoxia | GO:0055093 | 4 | 0.016 | |
| protein maturation | GO:0051604 | 233 | 0.016 | |
| defense response | GO:0006952 | 315 | 0.016 | |
| mitochondrion distribution | GO:0048311 | 3 | 0.015 | |
| female gamete generation | GO:0007292 | 2 | 0.015 | |
| regulation of anatomical structure morphogenesis | GO:0022603 | 286 | 0.015 | |
| immune system development | GO:0002520 | 195 | 0.015 | |
| regulation of hormone levels | GO:0010817 | 125 | 0.015 | |
| alpha amino acid biosynthetic process | GO:1901607 | 23 | 0.015 | |
| negative regulation of developmental process | GO:0051093 | 247 | 0.015 | |
| regulation of purine nucleotide metabolic process | GO:1900542 | 264 | 0.015 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 207 | 0.015 | |
| amino acid activation | GO:0043038 | 12 | 0.015 | |
| positive regulation of cysteine type endopeptidase activity | GO:2001056 | 79 | 0.015 | |
| regulation of cysteine type endopeptidase activity | GO:2000116 | 127 | 0.015 | |
| regulation of response to external stimulus | GO:0032101 | 222 | 0.014 | |
| regulation of dna metabolic process | GO:0051052 | 153 | 0.014 | |
| ion homeostasis | GO:0050801 | 230 | 0.014 | |
| positive regulation of protein catabolic process | GO:0045732 | 75 | 0.014 | |
| negative regulation of multicellular organismal process | GO:0051241 | 317 | 0.014 | |
| reactive oxygen species biosynthetic process | GO:1903409 | 4 | 0.014 | |
| negative regulation of cellular component organization | GO:0051129 | 235 | 0.014 | |
| protein tetramerization | GO:0051262 | 47 | 0.014 | |
| cellular response to oxygen containing compound | GO:1901701 | 276 | 0.014 | |
| response to acid chemical | GO:0001101 | 66 | 0.014 | |
| negative regulation of kinase activity | GO:0033673 | 106 | 0.014 | |
| response to drug | GO:0042493 | 81 | 0.013 | |
| response to metal ion | GO:0010038 | 84 | 0.013 | |
| ribonucleoside catabolic process | GO:0042454 | 406 | 0.013 | |
| intrinsic apoptotic signaling pathway | GO:0097193 | 127 | 0.013 | |
| cytoplasmic transport | GO:0016482 | 379 | 0.013 | |
| protein localization to membrane | GO:0072657 | 160 | 0.013 | |
| regulation of multi organism process | GO:0043900 | 157 | 0.013 | |
| nucleic acid phosphodiester bond hydrolysis | GO:0090305 | 102 | 0.013 | |
| purine nucleotide catabolic process | GO:0006195 | 405 | 0.013 | |
| purine nucleoside catabolic process | GO:0006152 | 398 | 0.013 | |
| regulation of growth | GO:0040008 | 165 | 0.013 | |
| negative regulation of response to external stimulus | GO:0032102 | 83 | 0.013 | |
| regulation of cellular response to stress | GO:0080135 | 244 | 0.013 | |
| negative regulation of phosphorus metabolic process | GO:0010563 | 267 | 0.012 | |
| cell cell signaling | GO:0007267 | 155 | 0.012 | |
| cellular response to abiotic stimulus | GO:0071214 | 117 | 0.012 | |
| organelle assembly | GO:0070925 | 176 | 0.012 | |
| organic acid transport | GO:0015849 | 65 | 0.012 | |
| response to increased oxygen levels | GO:0036296 | 4 | 0.012 | |
| negative regulation of phosphorylation | GO:0042326 | 174 | 0.012 | |
| positive regulation of cellular amino acid metabolic process | GO:0045764 | 3 | 0.012 | |
| covalent chromatin modification | GO:0016569 | 254 | 0.012 | |
| ras protein signal transduction | GO:0007265 | 73 | 0.012 | |
| regulation of protein catabolic process | GO:0042176 | 155 | 0.012 | |
| negative regulation of programmed cell death | GO:0043069 | 321 | 0.012 | |
| regulation of blood coagulation | GO:0030193 | 42 | 0.012 | |
| cellular response to nitrogen compound | GO:1901699 | 144 | 0.011 | |
| hormone metabolic process | GO:0042445 | 61 | 0.011 | |
| spermatid development | GO:0007286 | 4 | 0.011 | |
| peptide transport | GO:0015833 | 74 | 0.011 | |
| positive regulation of killing of cells of other organism | GO:0051712 | 4 | 0.011 | |
| negative regulation of protein processing | GO:0010955 | 142 | 0.011 | |
| response to decreased oxygen levels | GO:0036293 | 96 | 0.011 | |
| cellular hormone metabolic process | GO:0034754 | 41 | 0.011 | |
| establishment of protein localization to organelle | GO:0072594 | 172 | 0.011 | |
| hematopoietic or lymphoid organ development | GO:0048534 | 186 | 0.011 | |
| dicarboxylic acid biosynthetic process | GO:0043650 | 4 | 0.011 | |
| reproductive process | GO:0022414 | 106 | 0.011 | |
| biological adhesion | GO:0022610 | 331 | 0.011 | |
| regulation of cgmp biosynthetic process | GO:0030826 | 4 | 0.011 | |
| reactive nitrogen species metabolic process | GO:2001057 | 3 | 0.011 | |
| negative regulation of phosphate metabolic process | GO:0045936 | 267 | 0.011 | |
| cellular chemical homeostasis | GO:0055082 | 180 | 0.011 | |
| locomotory behavior | GO:0007626 | 1 | 0.010 | |
| regulation of peptide transport | GO:0090087 | 62 | 0.010 | |
| regulation of protein maturation | GO:1903317 | 150 | 0.010 | |
| neuron death | GO:0070997 | 65 | 0.010 | |
| alcohol biosynthetic process | GO:0046165 | 52 | 0.010 | |
| transmembrane transport | GO:0055085 | 399 | 0.010 | |
| cellular response to organonitrogen compound | GO:0071417 | 124 | 0.010 | |
| protein targeting | GO:0006605 | 187 | 0.010 | |