| mitochondrial transport | GO:0006839 | 60 | 0.753 | Yeast |
| post embryonic development | GO:0009791 | 2 | 0.578 | |
| intracellular protein transmembrane import | GO:0044743 | 23 | 0.563 | Yeast |
| transmembrane transport | GO:0055085 | 399 | 0.466 | Yeast |
| vesicle mediated transport | GO:0016192 | 371 | 0.354 | |
| mitochondrion organization | GO:0007005 | 156 | 0.327 | Yeast |
| cytoplasmic transport | GO:0016482 | 379 | 0.325 | Yeast |
| receptor mediated endocytosis | GO:0006898 | 84 | 0.178 | |
| single organism membrane organization | GO:0044802 | 268 | 0.162 | |
| protein localization to mitochondrion | GO:0070585 | 25 | 0.161 | Yeast |
| endocytosis | GO:0006897 | 159 | 0.154 | |
| protein import into mitochondrial matrix | GO:0030150 | 1 | 0.142 | Yeast |
| intracellular protein transmembrane transport | GO:0065002 | 24 | 0.136 | Yeast |
| embryo development | GO:0009790 | 123 | 0.113 | Worm |
| establishment of protein localization to organelle | GO:0072594 | 172 | 0.106 | Yeast |
| intracellular protein transport | GO:0006886 | 270 | 0.103 | Yeast |
| phototransduction | GO:0007602 | 3 | 0.102 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 34 | 0.100 | Worm |
| anion transport | GO:0006820 | 161 | 0.097 | |
| cellular macromolecular complex assembly | GO:0034622 | 324 | 0.094 | |
| mitochondrial membrane organization | GO:0007006 | 40 | 0.089 | |
| single organism cellular localization | GO:1902580 | 332 | 0.087 | Yeast |
| positive regulation of programmed cell death | GO:0043068 | 249 | 0.070 | |
| detection of stimulus | GO:0051606 | 85 | 0.067 | |
| positive regulation of organelle organization | GO:0010638 | 195 | 0.065 | |
| protein import | GO:0017038 | 130 | 0.061 | Yeast |
| multicellular organismal aging | GO:0010259 | 3 | 0.056 | |
| spermatid development | GO:0007286 | 4 | 0.055 | |
| membrane organization | GO:0061024 | 292 | 0.053 | |
| purine ribonucleoside metabolic process | GO:0046128 | 437 | 0.049 | |
| protein targeting | GO:0006605 | 187 | 0.042 | Yeast |
| epithelium development | GO:0060429 | 227 | 0.041 | |
| apoptotic mitochondrial changes | GO:0008637 | 57 | 0.040 | |
| protein localization to organelle | GO:0033365 | 280 | 0.037 | Yeast |
| positive regulation of mitochondrion organization | GO:0010822 | 30 | 0.037 | |
| nitrogen compound transport | GO:0071705 | 191 | 0.036 | |
| negative regulation of apoptotic process | GO:0043066 | 316 | 0.036 | |
| cellular macromolecule catabolic process | GO:0044265 | 380 | 0.035 | |
| establishment of protein localization to mitochondrion | GO:0072655 | 22 | 0.033 | Yeast |
| nuclear migration | GO:0007097 | 1 | 0.032 | |
| reproductive structure development | GO:0048608 | 55 | 0.032 | Worm |
| nucleoside triphosphate metabolic process | GO:0009141 | 422 | 0.031 | |
| purine ribonucleoside monophosphate metabolic process | GO:0009167 | 186 | 0.031 | |
| nucleobase containing compound transport | GO:0015931 | 51 | 0.029 | |
| cellular protein complex assembly | GO:0043623 | 188 | 0.029 | |
| protein transmembrane transport | GO:0071806 | 25 | 0.029 | Yeast |
| spermatid differentiation | GO:0048515 | 4 | 0.029 | |
| positive regulation of cellular component organization | GO:0051130 | 376 | 0.029 | |
| protein maturation | GO:0051604 | 233 | 0.028 | |
| reproduction | GO:0000003 | 63 | 0.027 | Worm |
| regulation of protein maturation | GO:1903317 | 150 | 0.025 | |
| determination of adult lifespan | GO:0008340 | 2 | 0.024 | |
| negative regulation of cell death | GO:0060548 | 345 | 0.024 | |
| protein targeting to mitochondrion | GO:0006626 | 19 | 0.023 | Yeast |
| regulation of apoptotic signaling pathway | GO:2001233 | 175 | 0.022 | |
| ion transmembrane transport | GO:0034220 | 338 | 0.022 | |
| regeneration | GO:0031099 | 4 | 0.022 | |
| nucleus localization | GO:0051647 | 1 | 0.022 | |
| locomotory behavior | GO:0007626 | 1 | 0.022 | |
| organophosphate catabolic process | GO:0046434 | 430 | 0.021 | |
| single organism reproductive process | GO:0044702 | 98 | 0.021 | Worm |
| tissue regeneration | GO:0042246 | 3 | 0.020 | |
| regulation of peptidase activity | GO:0052547 | 180 | 0.019 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 411 | 0.019 | |
| dna catabolic process | GO:0006308 | 49 | 0.019 | |
| oogenesis | GO:0048477 | 2 | 0.019 | |
| epithelial cell differentiation | GO:0030855 | 141 | 0.019 | |
| regulation of protein processing | GO:0070613 | 150 | 0.019 | |
| purine nucleotide catabolic process | GO:0006195 | 405 | 0.018 | |
| positive regulation of apoptotic process | GO:0043065 | 246 | 0.018 | |
| small molecule biosynthetic process | GO:0044283 | 157 | 0.018 | |
| negative regulation of catalytic activity | GO:0043086 | 335 | 0.018 | |
| positive regulation of cell death | GO:0010942 | 263 | 0.017 | |
| protein localization to membrane | GO:0072657 | 160 | 0.017 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 394 | 0.017 | |
| blastoderm segmentation | GO:0007350 | 2 | 0.017 | |
| regulation of cell motility | GO:2000145 | 299 | 0.017 | |
| rna interference | GO:0016246 | 4 | 0.017 | |
| growth | GO:0040007 | 202 | 0.017 | |
| regulation of cell adhesion | GO:0030155 | 166 | 0.016 | |
| negative regulation of programmed cell death | GO:0043069 | 321 | 0.016 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 412 | 0.016 | |
| response to oxidative stress | GO:0006979 | 121 | 0.015 | |
| female gamete generation | GO:0007292 | 2 | 0.015 | |
| regulation of proteolysis | GO:0030162 | 293 | 0.015 | |
| amine metabolic process | GO:0009308 | 44 | 0.015 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 412 | 0.015 | |
| nucleoside phosphate catabolic process | GO:1901292 | 412 | 0.015 | |
| regulation of ion transport | GO:0043269 | 189 | 0.014 | |
| positive regulation of developmental process | GO:0051094 | 314 | 0.014 | |
| purine ribonucleoside catabolic process | GO:0046130 | 398 | 0.014 | |
| negative regulation of intracellular signal transduction | GO:1902532 | 183 | 0.014 | |
| apoptotic signaling pathway | GO:0097190 | 268 | 0.014 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 391 | 0.014 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 244 | 0.014 | |
| nucleocytoplasmic transport | GO:0006913 | 176 | 0.014 | |
| negative regulation of catabolic process | GO:0009895 | 104 | 0.014 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 391 | 0.014 | |
| negative regulation of protein processing | GO:0010955 | 142 | 0.013 | |
| negative regulation of organelle organization | GO:0010639 | 126 | 0.013 | |
| ribonucleoprotein complex assembly | GO:0022618 | 78 | 0.013 | |
| response to virus | GO:0009615 | 126 | 0.013 | |
| detection of abiotic stimulus | GO:0009582 | 15 | 0.013 | |
| regulation of dna metabolic process | GO:0051052 | 153 | 0.013 | |
| cell growth | GO:0016049 | 160 | 0.013 | |
| regulation of endopeptidase activity | GO:0052548 | 170 | 0.013 | |
| reproductive system development | GO:0061458 | 56 | 0.013 | Worm |
| mitotic cell cycle | GO:0000278 | 326 | 0.012 | |
| establishment of organelle localization | GO:0051656 | 59 | 0.012 | |
| regulation of innate immune response | GO:0045088 | 97 | 0.012 | |
| regulation of cellular component biogenesis | GO:0044087 | 281 | 0.012 | |
| immune response | GO:0006955 | 307 | 0.012 | |
| protein processing | GO:0016485 | 226 | 0.012 | |
| negative regulation of cellular component organization | GO:0051129 | 235 | 0.012 | |
| reproductive process | GO:0022414 | 106 | 0.012 | Worm |
| regulation of mitochondrial membrane permeability | GO:0046902 | 25 | 0.012 | |
| regulation of immune response | GO:0050776 | 201 | 0.012 | |
| adult locomotory behavior | GO:0008344 | 1 | 0.012 | |
| defense response to other organism | GO:0098542 | 129 | 0.012 | |
| ribonucleoside catabolic process | GO:0042454 | 406 | 0.011 | |
| nucleoside catabolic process | GO:0009164 | 408 | 0.011 | |
| regulation of mitochondrial membrane permeability involved in apoptotic process | GO:1902108 | 18 | 0.011 | |
| nucleotide catabolic process | GO:0009166 | 408 | 0.011 | |
| multi organism reproductive process | GO:0044703 | 54 | 0.011 | |
| segmentation | GO:0035282 | 4 | 0.011 | |
| multicellular organism reproduction | GO:0032504 | 42 | 0.011 | |
| organic anion transport | GO:0015711 | 103 | 0.011 | |
| establishment of nucleus localization | GO:0040023 | 1 | 0.011 | |
| anterior posterior axis specification | GO:0009948 | 2 | 0.011 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 281 | 0.011 | |
| regulation of transmembrane transport | GO:0034762 | 139 | 0.011 | |
| secretion by cell | GO:0032940 | 226 | 0.011 | |
| dna replication | GO:0006260 | 116 | 0.011 | |
| negative regulation of hydrolase activity | GO:0051346 | 182 | 0.011 | |
| atp metabolic process | GO:0046034 | 176 | 0.011 | |
| regulation of mitochondrion organization | GO:0010821 | 54 | 0.011 | |
| nucleic acid phosphodiester bond hydrolysis | GO:0090305 | 102 | 0.011 | |
| regulation of cell cycle | GO:0051726 | 393 | 0.010 | |