| macromolecule methylation | GO:0043414 | 97 | 0.537 | |
| vesicle mediated transport | GO:0016192 | 371 | 0.506 | Worm |
| protein methylation | GO:0006479 | 74 | 0.430 | |
| protein alkylation | GO:0008213 | 74 | 0.381 | |
| rna catabolic process | GO:0006401 | 71 | 0.300 | Yeast |
| nuclear transcribed mrna catabolic process deadenylation dependent decay | GO:0000288 | 14 | 0.272 | Yeast |
| regulation of translation | GO:0006417 | 89 | 0.245 | Yeast |
| translational initiation | GO:0006413 | 48 | 0.218 | |
| amine metabolic process | GO:0009308 | 44 | 0.218 | |
| translation | GO:0006412 | 132 | 0.189 | |
| post embryonic development | GO:0009791 | 2 | 0.186 | Worm |
| amine biosynthetic process | GO:0009309 | 4 | 0.168 | |
| anterior posterior axis specification | GO:0009948 | 2 | 0.156 | |
| positive regulation of mrna 3 end processing | GO:0031442 | 12 | 0.142 | |
| protein import into mitochondrial matrix | GO:0030150 | 1 | 0.119 | |
| rna processing | GO:0006396 | 255 | 0.119 | |
| mrna processing | GO:0006397 | 133 | 0.116 | |
| positive regulation of organelle organization | GO:0010638 | 195 | 0.107 | |
| blastoderm segmentation | GO:0007350 | 2 | 0.107 | |
| cellular macromolecule catabolic process | GO:0044265 | 380 | 0.105 | Yeast |
| positive regulation of cellular component organization | GO:0051130 | 376 | 0.105 | |
| anterior posterior axis specification embryo | GO:0008595 | 2 | 0.104 | |
| single organism cellular localization | GO:1902580 | 332 | 0.104 | |
| positive regulation of translation | GO:0045727 | 35 | 0.103 | Yeast |
| cellular amine metabolic process | GO:0044106 | 41 | 0.103 | |
| nucleus organization | GO:0006997 | 28 | 0.094 | |
| rna interference | GO:0016246 | 4 | 0.093 | |
| positive regulation of mrna metabolic process | GO:1903313 | 19 | 0.085 | |
| anion transport | GO:0006820 | 161 | 0.084 | |
| embryo development | GO:0009790 | 123 | 0.083 | Worm |
| nuclear transcribed mrna catabolic process | GO:0000956 | 48 | 0.082 | Yeast |
| intracellular protein transport | GO:0006886 | 270 | 0.079 | |
| response to biotic stimulus | GO:0009607 | 276 | 0.079 | |
| rna 3 end processing | GO:0031123 | 35 | 0.077 | |
| single organism reproductive process | GO:0044702 | 98 | 0.075 | |
| negative regulation of rna catabolic process | GO:1902369 | 4 | 0.074 | |
| regulation of transmembrane transport | GO:0034762 | 139 | 0.074 | |
| oocyte differentiation | GO:0009994 | 2 | 0.069 | |
| reproductive process | GO:0022414 | 106 | 0.062 | |
| maturation of ssu rrna from tricistronic rrna transcript ssu rrna 5 8s rrna lsu rrna | GO:0000462 | 1 | 0.061 | |
| defense response | GO:0006952 | 315 | 0.060 | |
| segmentation | GO:0035282 | 4 | 0.059 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 213 | 0.058 | Yeast |
| mrna catabolic process | GO:0006402 | 56 | 0.056 | Yeast |
| positive regulation of cellular catabolic process | GO:0031331 | 284 | 0.056 | |
| spermatid development | GO:0007286 | 4 | 0.055 | |
| organelle assembly | GO:0070925 | 176 | 0.055 | |
| memory | GO:0007613 | 3 | 0.054 | |
| positive regulation of cellular component biogenesis | GO:0044089 | 158 | 0.052 | |
| cation transport | GO:0006812 | 331 | 0.052 | |
| polyamine metabolic process | GO:0006595 | 4 | 0.051 | |
| metal ion transport | GO:0030001 | 272 | 0.051 | |
| mitochondrion organization | GO:0007005 | 156 | 0.050 | |
| response to external biotic stimulus | GO:0043207 | 261 | 0.050 | |
| organophosphate biosynthetic process | GO:0090407 | 163 | 0.048 | |
| response to virus | GO:0009615 | 126 | 0.048 | |
| regulation of ion transmembrane transport | GO:0034765 | 132 | 0.047 | |
| anatomical structure formation involved in morphogenesis | GO:0048646 | 284 | 0.047 | |
| transmembrane receptor protein serine threonine kinase signaling pathway | GO:0007178 | 125 | 0.047 | |
| purine ribonucleoside monophosphate metabolic process | GO:0009167 | 186 | 0.046 | |
| regulation of peptidase activity | GO:0052547 | 180 | 0.046 | |
| determination of adult lifespan | GO:0008340 | 2 | 0.043 | |
| positive regulation of peptidase activity | GO:0010952 | 88 | 0.043 | |
| cellular lipid metabolic process | GO:0044255 | 303 | 0.042 | |
| transmembrane transport | GO:0055085 | 399 | 0.042 | |
| mrna metabolic process | GO:0016071 | 175 | 0.040 | Yeast |
| cell development | GO:0048468 | 328 | 0.039 | |
| regulation of cell differentiation | GO:0045595 | 393 | 0.038 | |
| sulfur compound metabolic process | GO:0006790 | 101 | 0.038 | |
| oocyte development | GO:0048599 | 1 | 0.038 | |
| sex differentiation | GO:0007548 | 45 | 0.038 | |
| negative regulation of protein metabolic process | GO:0051248 | 391 | 0.037 | |
| protein catabolic process | GO:0030163 | 325 | 0.037 | |
| ribonucleoside monophosphate metabolic process | GO:0009161 | 187 | 0.037 | |
| purine ribonucleoside metabolic process | GO:0046128 | 437 | 0.036 | Yeast |
| nucleoside triphosphate metabolic process | GO:0009141 | 422 | 0.036 | Yeast |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 411 | 0.036 | Yeast |
| microtubule cytoskeleton organization | GO:0000226 | 176 | 0.036 | |
| nucleoside catabolic process | GO:0009164 | 408 | 0.035 | Yeast |
| embryonic hemopoiesis | GO:0035162 | 4 | 0.035 | |
| multicellular organismal aging | GO:0010259 | 3 | 0.035 | |
| posttranscriptional gene silencing | GO:0016441 | 25 | 0.035 | |
| negative regulation of programmed cell death | GO:0043069 | 321 | 0.035 | |
| reproduction | GO:0000003 | 63 | 0.034 | Worm |
| negative regulation of cellular protein metabolic process | GO:0032269 | 353 | 0.033 | |
| regulation of protein targeting | GO:1903533 | 91 | 0.033 | |
| spermatid differentiation | GO:0048515 | 4 | 0.033 | |
| ion transmembrane transport | GO:0034220 | 338 | 0.033 | |
| glycosyl compound catabolic process | GO:1901658 | 413 | 0.032 | Yeast |
| negative regulation of cellular component organization | GO:0051129 | 235 | 0.032 | |
| somatic muscle development | GO:0007525 | 1 | 0.032 | |
| establishment of epithelial cell polarity | GO:0090162 | 2 | 0.032 | |
| cellular response to dna damage stimulus | GO:0006974 | 379 | 0.031 | |
| ribonucleoprotein complex biogenesis | GO:0022613 | 116 | 0.031 | |
| reproductive system development | GO:0061458 | 56 | 0.030 | |
| female gamete generation | GO:0007292 | 2 | 0.030 | |
| photoreceptor cell differentiation | GO:0046530 | 2 | 0.030 | |
| cellular amino acid metabolic process | GO:0006520 | 116 | 0.029 | |
| cellular component disassembly | GO:0022411 | 92 | 0.029 | |
| nuclear division | GO:0000280 | 128 | 0.028 | |
| reproductive structure development | GO:0048608 | 55 | 0.028 | |
| posttranscriptional gene silencing by rna | GO:0035194 | 25 | 0.028 | |
| lipid metabolic process | GO:0006629 | 381 | 0.028 | |
| heart development | GO:0007507 | 95 | 0.027 | |
| ribonucleoprotein complex export from nucleus | GO:0071426 | 4 | 0.027 | |
| regulation of mrna processing | GO:0050684 | 48 | 0.027 | |
| purine containing compound catabolic process | GO:0072523 | 411 | 0.027 | Yeast |
| defense response to other organism | GO:0098542 | 129 | 0.026 | |
| regulation of nuclear transcribed mrna catabolic process nonsense mediated decay | GO:2000622 | 3 | 0.026 | |
| gene silencing by rna | GO:0031047 | 26 | 0.026 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 200 | 0.026 | |
| nucleotide biosynthetic process | GO:0009165 | 109 | 0.025 | |
| cation transmembrane transport | GO:0098655 | 238 | 0.025 | |
| system process | GO:0003008 | 349 | 0.025 | |
| negative regulation of apoptotic process | GO:0043066 | 316 | 0.025 | |
| glycerolipid metabolic process | GO:0046486 | 107 | 0.024 | |
| guanosine containing compound catabolic process | GO:1901069 | 239 | 0.024 | Yeast |
| positive regulation of cysteine type endopeptidase activity | GO:2001056 | 79 | 0.023 | |
| regeneration | GO:0031099 | 4 | 0.023 | |
| regulation of protein localization | GO:0032880 | 296 | 0.023 | |
| cellular macromolecular complex assembly | GO:0034622 | 324 | 0.023 | |
| oogenesis | GO:0048477 | 2 | 0.023 | |
| ribonucleotide catabolic process | GO:0009261 | 405 | 0.023 | Yeast |
| mitotic spindle elongation | GO:0000022 | 4 | 0.023 | |
| mitotic nuclear division | GO:0007067 | 119 | 0.023 | |
| regulation of mrna catabolic process | GO:0061013 | 13 | 0.023 | |
| small gtpase mediated signal transduction | GO:0007264 | 78 | 0.023 | |
| negative regulation of catabolic process | GO:0009895 | 104 | 0.022 | |
| maturation of ssu rrna | GO:0030490 | 3 | 0.022 | |
| ribonucleoprotein complex localization | GO:0071166 | 4 | 0.022 | |
| developmental process involved in reproduction | GO:0003006 | 66 | 0.022 | |
| regulation of cell division | GO:0051302 | 116 | 0.022 | |
| neurological system process | GO:0050877 | 163 | 0.022 | |
| regulation of ion transmembrane transporter activity | GO:0032412 | 72 | 0.022 | |
| positive regulation of catabolic process | GO:0009896 | 310 | 0.021 | |
| gene silencing | GO:0016458 | 49 | 0.021 | |
| regulation of ion transport | GO:0043269 | 189 | 0.021 | |
| tripartite regional subdivision | GO:0007351 | 2 | 0.021 | |
| cellular homeostasis | GO:0019725 | 196 | 0.021 | |
| positive regulation of cytoplasmic mrna processing body assembly | GO:0010606 | 4 | 0.021 | |
| nuclear transcribed mrna catabolic process no go decay | GO:0070966 | 2 | 0.021 | Yeast |
| epithelium development | GO:0060429 | 227 | 0.021 | |
| immune system development | GO:0002520 | 195 | 0.020 | |
| nucleocytoplasmic transport | GO:0006913 | 176 | 0.020 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 392 | 0.020 | Yeast |
| negative regulation of mrna catabolic process | GO:1902373 | 4 | 0.020 | |
| response to other organism | GO:0051707 | 261 | 0.020 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 394 | 0.019 | Yeast |
| protein targeting | GO:0006605 | 187 | 0.019 | |
| protein localization to organelle | GO:0033365 | 280 | 0.019 | |
| regulation of defense response | GO:0031347 | 154 | 0.019 | |
| organelle fission | GO:0048285 | 149 | 0.019 | |
| regulation of translational initiation | GO:0006446 | 24 | 0.019 | |
| regulation of cytoplasmic mrna processing body assembly | GO:0010603 | 5 | 0.019 | |
| cellular biogenic amine metabolic process | GO:0006576 | 34 | 0.019 | |
| gonad development | GO:0008406 | 34 | 0.019 | |
| positive regulation of mrna processing | GO:0050685 | 17 | 0.018 | |
| purine ribonucleotide catabolic process | GO:0009154 | 404 | 0.018 | Yeast |
| single organism membrane organization | GO:0044802 | 268 | 0.018 | |
| lipid biosynthetic process | GO:0008610 | 177 | 0.018 | |
| negative regulation of protein modification process | GO:0031400 | 200 | 0.018 | |
| behavior | GO:0007610 | 112 | 0.018 | |
| cofactor biosynthetic process | GO:0051188 | 31 | 0.017 | |
| rrna containing ribonucleoprotein complex export from nucleus | GO:0071428 | 4 | 0.017 | |
| innate immune response | GO:0045087 | 178 | 0.017 | |
| locomotory behavior | GO:0007626 | 1 | 0.017 | |
| nuclear transport | GO:0051169 | 179 | 0.017 | |
| protein modification by small protein conjugation | GO:0032446 | 342 | 0.017 | |
| purine ribonucleoside monophosphate catabolic process | GO:0009169 | 158 | 0.017 | |
| regulation of mrna 3 end processing | GO:0031440 | 12 | 0.017 | |
| regulation of organelle assembly | GO:1902115 | 40 | 0.017 | |
| organophosphate catabolic process | GO:0046434 | 430 | 0.016 | Yeast |
| methylation | GO:0032259 | 106 | 0.016 | |
| hydrogen peroxide metabolic process | GO:0042743 | 20 | 0.016 | |
| cellular protein complex assembly | GO:0043623 | 188 | 0.016 | |
| organelle localization | GO:0051640 | 84 | 0.016 | |
| positive regulation of endopeptidase activity | GO:0010950 | 84 | 0.016 | |
| positive regulation of hydrolase activity | GO:0051345 | 331 | 0.016 | |
| regulation of homeostatic process | GO:0032844 | 121 | 0.016 | |
| wnt signaling pathway | GO:0016055 | 156 | 0.016 | |
| immune effector process | GO:0002252 | 159 | 0.016 | |
| endocytosis | GO:0006897 | 159 | 0.016 | Worm |
| protein localization to nucleus | GO:0034504 | 136 | 0.016 | |
| eye photoreceptor cell differentiation | GO:0001754 | 2 | 0.016 | |
| positive regulation of apoptotic process | GO:0043065 | 246 | 0.016 | |
| phospholipid metabolic process | GO:0006644 | 99 | 0.016 | |
| regulation of cell development | GO:0060284 | 161 | 0.016 | |
| nitrogen compound transport | GO:0071705 | 191 | 0.016 | |
| protein k48 linked ubiquitination | GO:0070936 | 38 | 0.016 | |
| microtubule based process | GO:0007017 | 210 | 0.015 | |
| regulation of mrna metabolic process | GO:1903311 | 53 | 0.015 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 391 | 0.015 | Yeast |
| macromolecular complex disassembly | GO:0032984 | 60 | 0.015 | |
| small molecule biosynthetic process | GO:0044283 | 157 | 0.015 | |
| chromosome segregation | GO:0007059 | 114 | 0.015 | |
| renal system development | GO:0072001 | 63 | 0.015 | |
| purine nucleotide catabolic process | GO:0006195 | 405 | 0.015 | Yeast |
| regulation of meiotic cell cycle | GO:0051445 | 4 | 0.015 | |
| alpha amino acid metabolic process | GO:1901605 | 72 | 0.015 | |
| nls bearing protein import into nucleus | GO:0006607 | 2 | 0.015 | |
| organ morphogenesis | GO:0009887 | 147 | 0.015 | |
| establishment of ribosome localization | GO:0033753 | 4 | 0.015 | |
| nuclear import | GO:0051170 | 106 | 0.015 | |
| negative regulation of transport | GO:0051051 | 176 | 0.015 | |
| carbohydrate metabolic process | GO:0005975 | 207 | 0.014 | |
| immune response | GO:0006955 | 307 | 0.014 | |
| negative regulation of cell differentiation | GO:0045596 | 171 | 0.014 | |
| regulation of intracellular protein transport | GO:0033157 | 123 | 0.014 | |
| nucleoside monophosphate metabolic process | GO:0009123 | 191 | 0.014 | |
| detection of stimulus | GO:0051606 | 85 | 0.014 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 34 | 0.014 | Worm |
| adult locomotory behavior | GO:0008344 | 1 | 0.014 | |
| regulation of nucleocytoplasmic transport | GO:0046822 | 98 | 0.014 | |
| negative regulation of stem cell proliferation | GO:2000647 | 3 | 0.014 | |
| regulation of dna metabolic process | GO:0051052 | 153 | 0.014 | |
| urogenital system development | GO:0001655 | 65 | 0.014 | |
| hematopoietic or lymphoid organ development | GO:0048534 | 186 | 0.014 | |
| negative regulation of epithelial to mesenchymal transition | GO:0010719 | 14 | 0.013 | |
| modification dependent protein catabolic process | GO:0019941 | 209 | 0.013 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 391 | 0.013 | Yeast |
| glycoprotein biosynthetic process | GO:0009101 | 91 | 0.013 | |
| single organism nuclear import | GO:1902593 | 104 | 0.013 | |
| development of primary sexual characteristics | GO:0045137 | 35 | 0.013 | |
| embryonic morphogenesis | GO:0048598 | 85 | 0.013 | |
| cell activation | GO:0001775 | 213 | 0.013 | |
| nuclear export | GO:0051168 | 69 | 0.013 | |
| regulation of cell migration | GO:0030334 | 289 | 0.013 | |
| regulation of response to external stimulus | GO:0032101 | 222 | 0.013 | |
| stem cell differentiation | GO:0048863 | 93 | 0.013 | |
| protein ubiquitination | GO:0016567 | 314 | 0.012 | |
| inorganic cation transmembrane transport | GO:0098662 | 194 | 0.012 | |
| regulation of proteolysis | GO:0030162 | 293 | 0.012 | |
| biological adhesion | GO:0022610 | 331 | 0.012 | |
| anatomical structure homeostasis | GO:0060249 | 100 | 0.012 | |
| histone modification | GO:0016570 | 251 | 0.012 | |
| cardiovascular system development | GO:0072358 | 262 | 0.012 | |
| positive regulation of immune system process | GO:0002684 | 283 | 0.012 | |
| maintenance of location | GO:0051235 | 112 | 0.012 | |
| hemopoiesis | GO:0030097 | 180 | 0.012 | |
| regulation of multi organism process | GO:0043900 | 157 | 0.012 | |
| cytoplasmic mrna processing body assembly | GO:0033962 | 10 | 0.012 | |
| protein stabilization | GO:0050821 | 64 | 0.012 | |
| positive regulation of programmed cell death | GO:0043068 | 249 | 0.012 | |
| meiotic chromosome segregation | GO:0045132 | 4 | 0.012 | |
| lipid localization | GO:0010876 | 106 | 0.012 | |
| endosomal transport | GO:0016197 | 129 | 0.011 | |
| circulatory system development | GO:0072359 | 262 | 0.011 | |
| regulation of protein import into nucleus | GO:0042306 | 78 | 0.011 | |
| sensory perception of pain | GO:0019233 | 4 | 0.011 | |
| multicellular organismal reproductive process | GO:0048609 | 40 | 0.011 | |
| centrosome organization | GO:0051297 | 58 | 0.011 | |
| single organism carbohydrate metabolic process | GO:0044723 | 193 | 0.011 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 412 | 0.011 | Yeast |
| regulation of sequence specific dna binding transcription factor activity | GO:0051090 | 211 | 0.011 | |
| purine nucleoside catabolic process | GO:0006152 | 398 | 0.011 | Yeast |
| negative regulation of hydrolase activity | GO:0051346 | 182 | 0.011 | |
| establishment of protein localization to organelle | GO:0072594 | 172 | 0.011 | |
| regulation of endopeptidase activity | GO:0052548 | 170 | 0.011 | |
| ribonucleoprotein complex assembly | GO:0022618 | 78 | 0.011 | |
| regulation of transmembrane transporter activity | GO:0022898 | 74 | 0.011 | |
| ribose phosphate biosynthetic process | GO:0046390 | 82 | 0.011 | |
| regulation of protein stability | GO:0031647 | 87 | 0.011 | |
| ribonucleoside catabolic process | GO:0042454 | 406 | 0.011 | Yeast |
| cellular chemical homeostasis | GO:0055082 | 180 | 0.011 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 412 | 0.011 | Yeast |
| ribosomal small subunit biogenesis | GO:0042274 | 13 | 0.011 | |
| response to drug | GO:0042493 | 81 | 0.011 | |
| single organism cell adhesion | GO:0098602 | 179 | 0.010 | |
| nucleotide catabolic process | GO:0009166 | 408 | 0.010 | Yeast |
| response to organic cyclic compound | GO:0014070 | 204 | 0.010 | |
| stem cell development | GO:0048864 | 69 | 0.010 | |
| cellular protein catabolic process | GO:0044257 | 261 | 0.010 | |
| cytoplasmic transport | GO:0016482 | 379 | 0.010 | |
| positive regulation of immune response | GO:0050778 | 159 | 0.010 | |
| protein polymerization | GO:0051258 | 71 | 0.010 | |
| positive regulation of meiotic cell cycle | GO:0051446 | 2 | 0.010 | |
