| positive regulation of transcription elongation from rna polymerase ii promoter | GO:0032968 | 10 | 1.000 | |
| positive regulation of dna templated transcription elongation | GO:0032786 | 18 | 1.000 | |
| mrna 3 end processing | GO:0031124 | 24 | 1.000 | |
| histone h2b ubiquitination | GO:0033523 | 8 | 1.000 | |
| regulation of dna templated transcription elongation | GO:0032784 | 23 | 0.996 | |
| negative regulation of myeloid cell differentiation | GO:0045638 | 42 | 0.994 | |
| transcription elongation from rna polymerase ii promoter | GO:0006368 | 18 | 0.992 | |
| rna 3 end processing | GO:0031123 | 35 | 0.990 | |
| regulation of transcription elongation from rna polymerase ii promoter | GO:0034243 | 13 | 0.990 | |
| transcription initiation from rna polymerase ii promoter | GO:0006367 | 27 | 0.983 | |
| positive regulation of mrna metabolic process | GO:1903313 | 19 | 0.981 | |
| regulation of myeloid cell differentiation | GO:0045637 | 81 | 0.973 | |
| rna processing | GO:0006396 | 255 | 0.962 | |
| mrna processing | GO:0006397 | 133 | 0.956 | |
| post embryonic development | GO:0009791 | 2 | 0.954 | Worm |
| endodermal cell fate commitment | GO:0001711 | 4 | 0.941 | |
| regulation of mrna 3 end processing | GO:0031440 | 12 | 0.929 | |
| mrna metabolic process | GO:0016071 | 175 | 0.916 | |
| cellular amino acid metabolic process | GO:0006520 | 116 | 0.907 | |
| chromatin organization | GO:0006325 | 351 | 0.901 | |
| peptidyl lysine methylation | GO:0018022 | 37 | 0.889 | |
| myeloid cell differentiation | GO:0030099 | 117 | 0.885 | |
| nucleic acid phosphodiester bond hydrolysis | GO:0090305 | 102 | 0.882 | |
| phosphorylation of rna polymerase ii c terminal domain | GO:0070816 | 3 | 0.870 | |
| positive regulation of mrna 3 end processing | GO:0031442 | 12 | 0.868 | |
| protein monoubiquitination | GO:0006513 | 39 | 0.839 | |
| negative regulation of cell differentiation | GO:0045596 | 171 | 0.818 | |
| negative regulation of multicellular organismal process | GO:0051241 | 317 | 0.813 | |
| hematopoietic or lymphoid organ development | GO:0048534 | 186 | 0.800 | |
| endodermal cell differentiation | GO:0035987 | 31 | 0.798 | |
| protein ubiquitination | GO:0016567 | 314 | 0.786 | |
| histone h3 k4 methylation | GO:0051568 | 27 | 0.761 | |
| histone monoubiquitination | GO:0010390 | 20 | 0.757 | |
| chromatin modification | GO:0016568 | 298 | 0.725 | |
| dna templated transcription elongation | GO:0006354 | 25 | 0.696 | |
| negative regulation of immune system process | GO:0002683 | 136 | 0.672 | |
| histone lysine methylation | GO:0034968 | 50 | 0.669 | |
| histone h3 k79 methylation | GO:0034729 | 2 | 0.644 | |
| regulation of protein complex assembly | GO:0043254 | 147 | 0.643 | |
| digestive tract morphogenesis | GO:0048546 | 56 | 0.619 | |
| regulation of cellular amine metabolic process | GO:0033238 | 11 | 0.594 | |
| histone ubiquitination | GO:0016574 | 31 | 0.593 | |
| covalent chromatin modification | GO:0016569 | 254 | 0.583 | |
| dna templated transcription termination | GO:0006353 | 3 | 0.582 | |
| growth | GO:0040007 | 202 | 0.565 | Worm |
| ncrna processing | GO:0034470 | 83 | 0.558 | |
| blastocyst development | GO:0001824 | 3 | 0.538 | |
| protein modification by small protein conjugation | GO:0032446 | 342 | 0.533 | |
| hemopoiesis | GO:0030097 | 180 | 0.522 | |
| positive regulation of chromatin modification | GO:1903310 | 30 | 0.512 | |
| negative regulation of developmental process | GO:0051093 | 247 | 0.506 | |
| response to bacterium | GO:0009617 | 144 | 0.497 | |
| positive regulation of cellular amino acid metabolic process | GO:0045764 | 3 | 0.496 | |
| regulation of chromatin organization | GO:1902275 | 56 | 0.496 | |
| formation of primary germ layer | GO:0001704 | 42 | 0.493 | |
| muscle system process | GO:0003012 | 81 | 0.492 | |
| positive regulation of cellular component organization | GO:0051130 | 376 | 0.490 | |
| histone modification | GO:0016570 | 251 | 0.482 | |
| regulation of cellular component biogenesis | GO:0044087 | 281 | 0.429 | |
| histone methylation | GO:0016571 | 60 | 0.419 | |
| regulation of cell differentiation | GO:0045595 | 393 | 0.417 | |
| cellular response to molecule of bacterial origin | GO:0071219 | 62 | 0.413 | |
| peptidyl lysine trimethylation | GO:0018023 | 10 | 0.409 | |
| regulation of dna templated transcription initiation | GO:2000142 | 9 | 0.400 | |
| response to lipopolysaccharide | GO:0032496 | 70 | 0.390 | |
| transcription from rna polymerase iii promoter | GO:0006383 | 19 | 0.389 | |
| cytokine mediated signaling pathway | GO:0019221 | 109 | 0.379 | |
| endocytosis | GO:0006897 | 159 | 0.326 | Worm |
| positive regulation of transcription initiation from rna polymerase ii promoter | GO:0060261 | 4 | 0.322 | |
| protein complex disassembly | GO:0043241 | 52 | 0.316 | |
| vesicle mediated transport | GO:0016192 | 371 | 0.312 | Worm |
| gene silencing | GO:0016458 | 49 | 0.308 | |
| response to external biotic stimulus | GO:0043207 | 261 | 0.288 | |
| protein alkylation | GO:0008213 | 74 | 0.281 | |
| response to other organism | GO:0051707 | 261 | 0.279 | |
| cellular response to cytokine stimulus | GO:0071345 | 181 | 0.269 | |
| embryonic morphogenesis | GO:0048598 | 85 | 0.260 | |
| dna templated transcription initiation | GO:0006352 | 35 | 0.256 | |
| stem cell differentiation | GO:0048863 | 93 | 0.233 | |
| ncrna metabolic process | GO:0034660 | 108 | 0.229 | |
| trophectodermal cell differentiation | GO:0001829 | 3 | 0.226 | |
| peptidyl lysine modification | GO:0018205 | 144 | 0.222 | |
| positive regulation of chromosome organization | GO:2001252 | 41 | 0.222 | |
| cellular amine metabolic process | GO:0044106 | 41 | 0.215 | |
| cellular response to oxygen containing compound | GO:1901701 | 276 | 0.211 | |
| positive regulation of organelle organization | GO:0010638 | 195 | 0.209 | |
| stem cell development | GO:0048864 | 69 | 0.207 | |
| tube development | GO:0035295 | 125 | 0.206 | |
| cellular response to lipopolysaccharide | GO:0071222 | 57 | 0.205 | |
| rna polyadenylation | GO:0043631 | 14 | 0.200 | |
| rna polymerase ii transcriptional preinitiation complex assembly | GO:0051123 | 4 | 0.197 | |
| stem cell maintenance | GO:0019827 | 19 | 0.189 | |
| regulation of dna metabolic process | GO:0051052 | 153 | 0.188 | |
| positive regulation of histone modification | GO:0031058 | 29 | 0.188 | |
| immune system development | GO:0002520 | 195 | 0.186 | |
| histone h3 k4 trimethylation | GO:0080182 | 7 | 0.177 | |
| receptor mediated endocytosis | GO:0006898 | 84 | 0.174 | Worm |
| erythrocyte differentiation | GO:0030218 | 28 | 0.171 | |
| cellular response to dna damage stimulus | GO:0006974 | 379 | 0.171 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 6 | 0.170 | |
| anatomical structure formation involved in morphogenesis | GO:0048646 | 284 | 0.168 | |
| cellular response to interleukin 6 | GO:0071354 | 14 | 0.168 | |
| response to biotic stimulus | GO:0009607 | 276 | 0.164 | |
| regulation of cell cycle process | GO:0010564 | 266 | 0.161 | |
| regulation of g1 s transition of mitotic cell cycle | GO:2000045 | 40 | 0.160 | |
| endoderm development | GO:0007492 | 33 | 0.160 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 50 | 0.151 | |
| digestive tract development | GO:0048565 | 75 | 0.151 | |
| response to oxygen containing compound | GO:1901700 | 369 | 0.146 | |
| amine metabolic process | GO:0009308 | 44 | 0.140 | |
| protein methylation | GO:0006479 | 74 | 0.138 | |
| cell cycle phase transition | GO:0044770 | 173 | 0.138 | |
| regulation of protein ubiquitination | GO:0031396 | 95 | 0.136 | |
| mrna polyadenylation | GO:0006378 | 12 | 0.135 | |
| positive regulation of protein complex assembly | GO:0031334 | 86 | 0.131 | |
| cell fate commitment | GO:0045165 | 27 | 0.130 | |
| cell fate commitment involved in formation of primary germ layer | GO:0060795 | 6 | 0.122 | |
| cellular macromolecular complex assembly | GO:0034622 | 324 | 0.121 | |
| mitotic cell cycle phase transition | GO:0044772 | 162 | 0.116 | |
| negative regulation of cell cycle phase transition | GO:1901988 | 89 | 0.109 | |
| ncrna 3 end processing | GO:0043628 | 4 | 0.103 | |
| regulation of histone modification | GO:0031056 | 47 | 0.096 | |
| muscle contraction | GO:0006936 | 73 | 0.095 | |
| digestive system development | GO:0055123 | 75 | 0.092 | |
| gastrulation | GO:0007369 | 51 | 0.089 | |
| cellular response to biotic stimulus | GO:0071216 | 71 | 0.089 | |
| regulation of cellular response to stress | GO:0080135 | 244 | 0.088 | |
| macromolecular complex disassembly | GO:0032984 | 60 | 0.087 | |
| positive regulation of histone h3 k4 methylation | GO:0051571 | 8 | 0.085 | |
| regulation of transcription by chromatin organization | GO:0034401 | 1 | 0.083 | |
| embryo development | GO:0009790 | 123 | 0.083 | Worm |
| mitotic cell cycle process | GO:1903047 | 286 | 0.082 | |
| macromolecule methylation | GO:0043414 | 97 | 0.077 | |
| response to molecule of bacterial origin | GO:0002237 | 82 | 0.076 | |
| regulation of chromosome organization | GO:0033044 | 103 | 0.071 | |
| regulation of mrna processing | GO:0050684 | 48 | 0.070 | |
| genetic imprinting | GO:0071514 | 1 | 0.067 | |
| cell development | GO:0048468 | 328 | 0.067 | |
| methylation | GO:0032259 | 106 | 0.066 | |
| protein dna complex assembly | GO:0065004 | 64 | 0.066 | |
| endoderm formation | GO:0001706 | 33 | 0.062 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 34 | 0.062 | Worm |
| negative regulation of cell cycle | GO:0045786 | 193 | 0.061 | |
| oogenesis | GO:0048477 | 2 | 0.061 | |
| response to lipid | GO:0033993 | 206 | 0.060 | |
| ribonucleoside catabolic process | GO:0042454 | 406 | 0.059 | |
| regulation of chromatin silencing | GO:0031935 | 8 | 0.056 | |
| nucleoside catabolic process | GO:0009164 | 408 | 0.053 | |
| female gamete generation | GO:0007292 | 2 | 0.052 | |
| cell cycle g1 s phase transition | GO:0044843 | 80 | 0.052 | |
| regulation of histone methylation | GO:0031060 | 16 | 0.051 | |
| g1 s transition of mitotic cell cycle | GO:0000082 | 78 | 0.050 | |
| nucleotide catabolic process | GO:0009166 | 408 | 0.050 | |
| negative regulation of cell cycle g1 s phase transition | GO:1902807 | 29 | 0.049 | |
| snorna metabolic process | GO:0016074 | 1 | 0.048 | |
| blastocyst formation | GO:0001825 | 3 | 0.047 | |
| negative regulation of cell cycle process | GO:0010948 | 121 | 0.043 | |
| cellular ketone metabolic process | GO:0042180 | 80 | 0.043 | |
| response to cytokine | GO:0034097 | 232 | 0.042 | |
| regulation of response to dna damage stimulus | GO:2001020 | 94 | 0.039 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 7 | 0.038 | |
| nucleoside phosphate catabolic process | GO:1901292 | 412 | 0.035 | |
| dephosphorylation | GO:0016311 | 209 | 0.034 | |
| negative regulation of gene expression epigenetic | GO:0045814 | 19 | 0.034 | |
| positive regulation of developmental process | GO:0051094 | 314 | 0.034 | Worm |
| negative regulation of catalytic activity | GO:0043086 | 335 | 0.033 | |
| purine containing compound catabolic process | GO:0072523 | 411 | 0.033 | |
| reproduction | GO:0000003 | 63 | 0.033 | Worm |
| jak stat cascade | GO:0007259 | 46 | 0.031 | |
| positive regulation of cellular component biogenesis | GO:0044089 | 158 | 0.031 | |
| positive regulation of smoothened signaling pathway | GO:0045880 | 4 | 0.031 | |
| nervous system development | GO:0007399 | 293 | 0.031 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 412 | 0.031 | |
| positive regulation of transcription from rna polymerase i promoter | GO:0045943 | 6 | 0.031 | |
| guanosine containing compound catabolic process | GO:1901069 | 239 | 0.030 | |
| purine ribonucleoside catabolic process | GO:0046130 | 398 | 0.030 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 118 | 0.030 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 391 | 0.029 | |
| development of primary sexual characteristics | GO:0045137 | 35 | 0.028 | Worm |
| erythrocyte homeostasis | GO:0034101 | 31 | 0.027 | |
| regulation of cell cycle g1 s phase transition | GO:1902806 | 42 | 0.027 | |
| protein dna complex subunit organization | GO:0071824 | 80 | 0.027 | |
| regulation of protein kinase activity | GO:0045859 | 289 | 0.027 | |
| transcription from rna polymerase i promoter | GO:0006360 | 11 | 0.027 | |
| positive regulation of cell proliferation | GO:0008284 | 301 | 0.026 | |
| multicellular organismal aging | GO:0010259 | 3 | 0.025 | |
| regulation of mitotic cell cycle | GO:0007346 | 189 | 0.025 | |
| regulation of proteolysis | GO:0030162 | 293 | 0.025 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 394 | 0.025 | |
| regulation of wnt signaling pathway | GO:0030111 | 123 | 0.025 | |
| chordate embryonic development | GO:0043009 | 34 | 0.024 | |
| internal protein amino acid acetylation | GO:0006475 | 101 | 0.024 | |
| positive regulation of histone methylation | GO:0031062 | 12 | 0.023 | |
| rna interference | GO:0016246 | 4 | 0.022 | |
| cytoplasmic transport | GO:0016482 | 379 | 0.022 | |
| organophosphate catabolic process | GO:0046434 | 430 | 0.022 | |
| cellular response to lipid | GO:0071396 | 127 | 0.022 | |
| cellular macromolecule catabolic process | GO:0044265 | 380 | 0.022 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 213 | 0.022 | |
| gtp catabolic process | GO:0006184 | 237 | 0.022 | |
| negative regulation of protein metabolic process | GO:0051248 | 391 | 0.022 | |
| regulation of protein stability | GO:0031647 | 87 | 0.022 | |
| regulation of protein processing | GO:0070613 | 150 | 0.022 | |
| segmentation | GO:0035282 | 4 | 0.021 | |
| regulation of gene silencing | GO:0060968 | 24 | 0.021 | |
| negative regulation of proteolysis | GO:0045861 | 132 | 0.021 | |
| protein processing | GO:0016485 | 226 | 0.021 | |
| purine nucleoside catabolic process | GO:0006152 | 398 | 0.021 | |
| regulation of transcription initiation from rna polymerase ii promoter | GO:0060260 | 8 | 0.020 | |
| system process | GO:0003008 | 349 | 0.020 | |
| positive regulation of cellular catabolic process | GO:0031331 | 284 | 0.020 | |
| regulation of meiosis | GO:0040020 | 3 | 0.020 | |
| response to interleukin 6 | GO:0070741 | 15 | 0.019 | |
| microtubule based process | GO:0007017 | 210 | 0.019 | |
| determination of adult lifespan | GO:0008340 | 2 | 0.019 | |
| dna repair | GO:0006281 | 198 | 0.019 | |
| cell growth | GO:0016049 | 160 | 0.019 | |
| oocyte development | GO:0048599 | 1 | 0.018 | |
| cellular component disassembly | GO:0022411 | 92 | 0.018 | |
| homeostasis of number of cells | GO:0048872 | 40 | 0.018 | |
| purine nucleotide catabolic process | GO:0006195 | 405 | 0.018 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 391 | 0.018 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 412 | 0.018 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 353 | 0.018 | |
| regulation of rna polymerase ii transcriptional preinitiation complex assembly | GO:0045898 | 3 | 0.017 | |
| glycosyl compound catabolic process | GO:1901658 | 413 | 0.017 | |
| gtp metabolic process | GO:0046039 | 239 | 0.017 | |
| ribonucleoprotein complex biogenesis | GO:0022613 | 116 | 0.017 | |
| regulation of protein complex disassembly | GO:0043244 | 28 | 0.017 | |
| oocyte differentiation | GO:0009994 | 2 | 0.017 | |
| rna phosphodiester bond hydrolysis | GO:0090501 | 35 | 0.017 | |
| trna metabolic process | GO:0006399 | 35 | 0.017 | |
| reproductive process | GO:0022414 | 106 | 0.016 | Worm |
| positive regulation of protein phosphorylation | GO:0001934 | 313 | 0.016 | |
| sex differentiation | GO:0007548 | 45 | 0.016 | Worm |
| regeneration | GO:0031099 | 4 | 0.016 | |
| tissue regeneration | GO:0042246 | 3 | 0.015 | |
| protein catabolic process | GO:0030163 | 325 | 0.015 | |
| dna templated transcriptional preinitiation complex assembly | GO:0070897 | 5 | 0.015 | |
| posttranscriptional gene silencing | GO:0016441 | 25 | 0.015 | |
| regulation of epithelial cell proliferation | GO:0050678 | 113 | 0.015 | |
| reproductive system development | GO:0061458 | 56 | 0.015 | Worm |
| wnt signaling pathway | GO:0016055 | 156 | 0.015 | |
| viral process | GO:0016032 | 146 | 0.015 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 422 | 0.015 | |
| interleukin 6 mediated signaling pathway | GO:0070102 | 7 | 0.015 | |
| regulation of mrna metabolic process | GO:1903311 | 53 | 0.015 | |
| positive regulation of hydrolase activity | GO:0051345 | 331 | 0.015 | |
| negative regulation of cellular component organization | GO:0051129 | 235 | 0.015 | |
| negative regulation of protein processing | GO:0010955 | 142 | 0.015 | |
| positive regulation of wnt signaling pathway | GO:0030177 | 54 | 0.014 | |
| actin filament based process | GO:0030029 | 224 | 0.014 | |
| negative regulation of phosphate metabolic process | GO:0045936 | 267 | 0.014 | |
| regulation of dephosphorylation | GO:0035303 | 96 | 0.014 | |
| brain morphogenesis | GO:0048854 | 1 | 0.014 | |
| regulation of meiotic cell cycle | GO:0051445 | 4 | 0.014 | |
| cellular protein complex assembly | GO:0043623 | 188 | 0.014 | |
| nucleoside monophosphate catabolic process | GO:0009125 | 159 | 0.014 | |
| purine ribonucleotide catabolic process | GO:0009154 | 404 | 0.014 | |
| neuroendocrine cell differentiation | GO:0061101 | 2 | 0.013 | |
| negative regulation of dephosphorylation | GO:0035305 | 63 | 0.013 | |
| organelle assembly | GO:0070925 | 176 | 0.013 | |
| positive regulation of mrna processing | GO:0050685 | 17 | 0.013 | |
| ribonucleotide catabolic process | GO:0009261 | 405 | 0.013 | |
| anterior posterior axis specification | GO:0009948 | 2 | 0.013 | |
| response to hypoxia | GO:0001666 | 96 | 0.013 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 411 | 0.013 | |
| neuromuscular junction development | GO:0007528 | 3 | 0.013 | |
| peripheral nervous system development | GO:0007422 | 2 | 0.013 | |
| negative regulation of hydrolase activity | GO:0051346 | 182 | 0.013 | |
| guanosine containing compound metabolic process | GO:1901068 | 244 | 0.012 | |
| response to wounding | GO:0009611 | 168 | 0.012 | |
| negative regulation of protein modification process | GO:0031400 | 200 | 0.012 | |
| negative regulation of mitotic cell cycle | GO:0045930 | 102 | 0.012 | |
| protein destabilization | GO:0031648 | 12 | 0.012 | |
| spindle organization | GO:0007051 | 53 | 0.012 | |
| regulation of purine nucleotide metabolic process | GO:1900542 | 264 | 0.012 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 392 | 0.012 | |
| blood vessel morphogenesis | GO:0048514 | 162 | 0.012 | |
| cell activation | GO:0001775 | 213 | 0.012 | |
| rrna metabolic process | GO:0016072 | 40 | 0.012 | |
| regulation of protein transport | GO:0051223 | 213 | 0.012 | |
| protein maturation | GO:0051604 | 233 | 0.012 | |
| regulation of cell morphogenesis | GO:0022604 | 153 | 0.012 | |
| negative regulation of programmed cell death | GO:0043069 | 321 | 0.012 | |
| regulation of neurogenesis | GO:0050767 | 82 | 0.012 | |
| regulation of dna repair | GO:0006282 | 47 | 0.011 | |
| regulation of anatomical structure morphogenesis | GO:0022603 | 286 | 0.011 | |
| regulation of protein modification by small protein conjugation or removal | GO:1903320 | 107 | 0.011 | |
| positive regulation of programmed cell death | GO:0043068 | 249 | 0.011 | |
| purine ribonucleoside metabolic process | GO:0046128 | 437 | 0.011 | |
| regulation of cell cycle | GO:0051726 | 393 | 0.011 | |
| regulation of growth | GO:0040008 | 165 | 0.011 | Worm |
| cardiovascular system development | GO:0072358 | 262 | 0.011 | |
| negative regulation of phosphatase activity | GO:0010923 | 61 | 0.011 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 281 | 0.011 | |
| regulation of membrane potential | GO:0042391 | 95 | 0.011 | |
| rna splicing | GO:0008380 | 131 | 0.011 | |
| myosin filament organization | GO:0031033 | 2 | 0.011 | |
| regulation of transferase activity | GO:0051338 | 355 | 0.010 | |
| viral life cycle | GO:0019058 | 132 | 0.010 | |
| regulation of cellular protein catabolic process | GO:1903362 | 96 | 0.010 | |
| negative regulation of intracellular signal transduction | GO:1902532 | 183 | 0.010 | |
| intrinsic apoptotic signaling pathway | GO:0097193 | 127 | 0.010 | |
| protein targeting | GO:0006605 | 187 | 0.010 | |
| dna conformation change | GO:0071103 | 113 | 0.010 | |
