| modification dependent macromolecule catabolic process | GO:0043632 | 212 | 0.997 | Yeast |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 156 | 0.993 | Yeast |
| cellular macromolecule catabolic process | GO:0044265 | 380 | 0.989 | Yeast |
| cellular response to dna damage stimulus | GO:0006974 | 379 | 0.984 | |
| protein catabolic process | GO:0030163 | 325 | 0.983 | Yeast |
| modification dependent protein catabolic process | GO:0019941 | 209 | 0.963 | Yeast |
| ubiquitin dependent protein catabolic process | GO:0006511 | 206 | 0.962 | Yeast |
| proteasomal protein catabolic process | GO:0010498 | 176 | 0.938 | Yeast |
| determination of adult lifespan | GO:0008340 | 2 | 0.930 | |
| cellular macromolecular complex assembly | GO:0034622 | 324 | 0.928 | Yeast |
| regulation of proteolysis involved in cellular protein catabolic process | GO:1903050 | 91 | 0.876 | |
| regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032434 | 71 | 0.838 | |
| regulation of proteasomal protein catabolic process | GO:0061136 | 87 | 0.730 | |
| cellular protein catabolic process | GO:0044257 | 261 | 0.712 | Yeast |
| multicellular organismal aging | GO:0010259 | 3 | 0.705 | |
| post embryonic development | GO:0009791 | 2 | 0.671 | Worm |
| embryo development ending in birth or egg hatching | GO:0009792 | 34 | 0.642 | Worm |
| non recombinational repair | GO:0000726 | 14 | 0.621 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 244 | 0.583 | Yeast |
| proteasome assembly | GO:0043248 | 7 | 0.549 | Yeast |
| blastocyst development | GO:0001824 | 3 | 0.491 | |
| proteasomal ubiquitin independent protein catabolic process | GO:0010499 | 3 | 0.395 | Yeast |
| chromatin modification | GO:0016568 | 298 | 0.372 | |
| aging | GO:0007568 | 66 | 0.356 | |
| reproduction | GO:0000003 | 63 | 0.300 | Worm |
| embryo development | GO:0009790 | 123 | 0.275 | Worm |
| mitotic nuclear division | GO:0007067 | 119 | 0.264 | |
| dna repair | GO:0006281 | 198 | 0.248 | |
| oogenesis | GO:0048477 | 2 | 0.208 | |
| positive regulation of proteolysis involved in cellular protein catabolic process | GO:1903052 | 35 | 0.195 | |
| regulation of cellular protein catabolic process | GO:1903362 | 96 | 0.174 | |
| negative regulation of phosphorylation | GO:0042326 | 174 | 0.165 | |
| multicellular organism reproduction | GO:0032504 | 42 | 0.154 | |
| mitotic cell cycle process | GO:1903047 | 286 | 0.147 | |
| cellular protein complex assembly | GO:0043623 | 188 | 0.147 | Yeast |
| chromatin organization | GO:0006325 | 351 | 0.138 | |
| molting cycle | GO:0042303 | 28 | 0.131 | |
| anaphase promoting complex dependent proteasomal ubiquitin dependent protein catabolic process | GO:0031145 | 25 | 0.124 | |
| oxidation reduction process | GO:0055114 | 396 | 0.118 | |
| spindle assembly involved in mitosis | GO:0090307 | 12 | 0.116 | |
| recombinational repair | GO:0000725 | 50 | 0.104 | |
| mitotic cell cycle | GO:0000278 | 326 | 0.102 | |
| positive regulation of proteolysis | GO:0045862 | 142 | 0.099 | |
| double strand break repair via homologous recombination | GO:0000724 | 50 | 0.091 | |
| nuclear division | GO:0000280 | 128 | 0.090 | |
| spermatid differentiation | GO:0048515 | 4 | 0.088 | |
| spindle assembly | GO:0051225 | 29 | 0.087 | |
| microtubule organizing center organization | GO:0031023 | 62 | 0.085 | |
| regulation of mitosis | GO:0007088 | 63 | 0.080 | |
| covalent chromatin modification | GO:0016569 | 254 | 0.077 | |
| positive regulation of sequence specific dna binding transcription factor activity | GO:0051091 | 131 | 0.076 | |
| spermatid development | GO:0007286 | 4 | 0.073 | |
| regulation of cellular response to stress | GO:0080135 | 244 | 0.067 | |
| mitotic spindle organization | GO:0007052 | 27 | 0.066 | |
| negative regulation of response to wounding | GO:1903035 | 47 | 0.061 | |
| sister chromatid segregation | GO:0000819 | 54 | 0.060 | |
| meiosis i | GO:0007127 | 4 | 0.059 | |
| protein dna complex subunit organization | GO:0071824 | 80 | 0.059 | |
| oocyte differentiation | GO:0009994 | 2 | 0.056 | |
| double strand break repair | GO:0006302 | 101 | 0.056 | |
| protein deubiquitination | GO:0016579 | 79 | 0.055 | |
| nucleotide catabolic process | GO:0009166 | 408 | 0.048 | |
| negative regulation of cell death | GO:0060548 | 345 | 0.048 | |
| microtubule cytoskeleton organization | GO:0000226 | 176 | 0.046 | |
| nervous system development | GO:0007399 | 293 | 0.045 | |
| immune response | GO:0006955 | 307 | 0.045 | |
| microtubule based process | GO:0007017 | 210 | 0.044 | |
| ribosomal small subunit export from nucleus | GO:0000056 | 3 | 0.042 | |
| negative regulation of programmed cell death | GO:0043069 | 321 | 0.040 | |
| chromosome separation | GO:0051304 | 23 | 0.037 | |
| negative regulation of protein metabolic process | GO:0051248 | 391 | 0.036 | |
| dna recombination | GO:0006310 | 77 | 0.033 | |
| meiotic chromosome segregation | GO:0045132 | 4 | 0.033 | |
| regulation of sequence specific dna binding transcription factor activity | GO:0051090 | 211 | 0.031 | |
| positive regulation of cell proliferation | GO:0008284 | 301 | 0.031 | |
| positive regulation of catabolic process | GO:0009896 | 310 | 0.030 | |
| neurogenesis | GO:0022008 | 169 | 0.030 | |
| er associated ubiquitin dependent protein catabolic process | GO:0030433 | 31 | 0.030 | |
| inflammatory response to antigenic stimulus | GO:0002437 | 4 | 0.029 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 392 | 0.029 | |
| multicellular organismal reproductive process | GO:0048609 | 40 | 0.029 | |
| regulation of response to external stimulus | GO:0032101 | 222 | 0.029 | |
| histone deubiquitination | GO:0016578 | 16 | 0.028 | |
| negative regulation of cellular catabolic process | GO:0031330 | 83 | 0.028 | |
| positive regulation of hydrolase activity | GO:0051345 | 331 | 0.028 | |
| purine nucleoside monophosphate catabolic process | GO:0009128 | 158 | 0.027 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 6 | 0.027 | |
| response to organic cyclic compound | GO:0014070 | 204 | 0.027 | |
| protein maturation | GO:0051604 | 233 | 0.026 | |
| nitrogen compound transport | GO:0071705 | 191 | 0.026 | |
| regulation of protein catabolic process | GO:0042176 | 155 | 0.026 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 353 | 0.025 | |
| purine ribonucleoside catabolic process | GO:0046130 | 398 | 0.025 | |
| defense response | GO:0006952 | 315 | 0.024 | |
| positive regulation of peptidase activity | GO:0010952 | 88 | 0.024 | |
| cellular ketone metabolic process | GO:0042180 | 80 | 0.023 | |
| regulation of extrinsic apoptotic signaling pathway | GO:2001236 | 85 | 0.023 | |
| response to wounding | GO:0009611 | 168 | 0.022 | |
| regulation of endopeptidase activity | GO:0052548 | 170 | 0.021 | |
| positive regulation of proteasomal protein catabolic process | GO:1901800 | 35 | 0.021 | |
| female gamete generation | GO:0007292 | 2 | 0.021 | |
| ribonucleotide catabolic process | GO:0009261 | 405 | 0.021 | |
| positive regulation of cellular catabolic process | GO:0031331 | 284 | 0.020 | |
| purine nucleotide catabolic process | GO:0006195 | 405 | 0.020 | |
| regulation of cellular component biogenesis | GO:0044087 | 281 | 0.019 | |
| mitotic sister chromatid segregation | GO:0000070 | 53 | 0.018 | |
| epithelial cell differentiation | GO:0030855 | 141 | 0.018 | |
| single organism reproductive process | GO:0044702 | 98 | 0.017 | Worm |
| organelle fission | GO:0048285 | 149 | 0.017 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 50 | 0.016 | |
| response to oxidative stress | GO:0006979 | 121 | 0.016 | |
| cell cycle checkpoint | GO:0000075 | 117 | 0.015 | |
| nucleoside phosphate catabolic process | GO:1901292 | 412 | 0.015 | |
| positive regulation of endopeptidase activity | GO:0010950 | 84 | 0.015 | |
| organophosphate catabolic process | GO:0046434 | 430 | 0.015 | |
| chromatin remodeling | GO:0006338 | 55 | 0.014 | |
| regulation of peptidase activity | GO:0052547 | 180 | 0.014 | |
| purine ribonucleotide catabolic process | GO:0009154 | 404 | 0.014 | |
| mrna processing | GO:0006397 | 133 | 0.014 | |
| negative regulation of protein maturation | GO:1903318 | 142 | 0.014 | |
| cell division | GO:0051301 | 168 | 0.014 | |
| cellular process involved in reproduction in multicellular organism | GO:0022412 | 15 | 0.013 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 422 | 0.013 | |
| chromosome segregation | GO:0007059 | 114 | 0.013 | |
| signal transduction by phosphorylation | GO:0023014 | 297 | 0.013 | |
| meiotic cell cycle process | GO:1903046 | 8 | 0.013 | |
| inflammatory response | GO:0006954 | 79 | 0.013 | |
| regulation of mapk cascade | GO:0043408 | 262 | 0.013 | |
| regulation of cellular amine metabolic process | GO:0033238 | 11 | 0.012 | |
| double strand break repair via nonhomologous end joining | GO:0006303 | 10 | 0.012 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 391 | 0.012 | |
| regulation of protein serine threonine kinase activity | GO:0071900 | 179 | 0.012 | |
| histone modification | GO:0016570 | 251 | 0.012 | |
| cell growth | GO:0016049 | 160 | 0.012 | |
| fertilization | GO:0009566 | 12 | 0.012 | |
| mitochondrion organization | GO:0007005 | 156 | 0.012 | |
| glycosyl compound catabolic process | GO:1901658 | 413 | 0.012 | |
| spermatogenesis | GO:0007283 | 22 | 0.012 | |
| regulation of meiotic cell cycle | GO:0051445 | 4 | 0.012 | |
| regulation of inflammatory response to antigenic stimulus | GO:0002861 | 2 | 0.012 | |
| positive regulation of cell differentiation | GO:0045597 | 211 | 0.011 | |
| response to other organism | GO:0051707 | 261 | 0.011 | |
| regulation of chromosome organization | GO:0033044 | 103 | 0.011 | |
| single fertilization | GO:0007338 | 11 | 0.011 | |
| regulation of spindle checkpoint | GO:0090231 | 12 | 0.011 | |
| negative regulation of protein processing | GO:0010955 | 142 | 0.011 | |
| negative regulation of catabolic process | GO:0009895 | 104 | 0.011 | |
| positive regulation of dna dependent dna replication | GO:2000105 | 7 | 0.011 | |
| regulation of sister chromatid segregation | GO:0033045 | 27 | 0.011 | |
| regulation of proteolysis | GO:0030162 | 293 | 0.011 | |
| purine containing compound catabolic process | GO:0072523 | 411 | 0.011 | |
| oocyte development | GO:0048599 | 1 | 0.010 | |
| reproductive process | GO:0022414 | 106 | 0.010 | Worm |
| response to external biotic stimulus | GO:0043207 | 261 | 0.010 | |
| negative regulation of apoptotic process | GO:0043066 | 316 | 0.010 | |
| regulation of immune response | GO:0050776 | 201 | 0.010 | |