| mrna splicing via spliceosome | GO:0000398 | 43 | 0.955 | Rat |
| rna splicing via transesterification reactions | GO:0000375 | 43 | 0.922 | Rat |
| mrna metabolic process | GO:0016071 | 84 | 0.901 | Rat |
| rna processing | GO:0006396 | 105 | 0.789 | Rat |
| rna splicing via transesterification reactions with bulged adenosine as nucleophile | GO:0000377 | 43 | 0.690 | Rat |
| nucleic acid transport | GO:0050657 | 18 | 0.638 | |
| rna splicing | GO:0008380 | 54 | 0.621 | Rat |
| regulation of mrna splicing via spliceosome | GO:0048024 | 32 | 0.478 | Rat |
| mrna processing | GO:0006397 | 63 | 0.473 | Rat |
| rna localization | GO:0006403 | 23 | 0.436 | |
| nucleocytoplasmic transport | GO:0006913 | 139 | 0.436 | |
| regulation of rna splicing | GO:0043484 | 37 | 0.356 | Rat |
| microtubule cytoskeleton organization | GO:0000226 | 157 | 0.327 | |
| regulation of dna templated transcription termination | GO:0031554 | 1 | 0.306 | |
| alternative mrna splicing via spliceosome | GO:0000380 | 12 | 0.278 | Rat |
| development of primary sexual characteristics | GO:0045137 | 143 | 0.257 | |
| microtubule based process | GO:0007017 | 236 | 0.225 | |
| mitotic cell cycle process | GO:1903047 | 159 | 0.195 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 280 | 0.165 | |
| cytoplasmic transport | GO:0016482 | 234 | 0.155 | |
| protein complex disassembly | GO:0043241 | 40 | 0.151 | |
| aromatic compound catabolic process | GO:0019439 | 286 | 0.145 | |
| nuclear transcribed mrna catabolic process | GO:0000956 | 16 | 0.136 | |
| rna transport | GO:0050658 | 18 | 0.135 | |
| nuclear transport | GO:0051169 | 139 | 0.131 | |
| regulation of mrna stability | GO:0043488 | 23 | 0.130 | |
| heterocycle catabolic process | GO:0046700 | 280 | 0.128 | |
| nucleotide metabolic process | GO:0009117 | 332 | 0.106 | |
| nucleobase containing compound transport | GO:0015931 | 27 | 0.102 | |
| establishment of rna localization | GO:0051236 | 18 | 0.101 | |
| purine nucleotide catabolic process | GO:0006195 | 211 | 0.094 | |
| mrna catabolic process | GO:0006402 | 22 | 0.091 | |
| regulation of nucleotide catabolic process | GO:0030811 | 122 | 0.088 | |
| regulation of protein complex disassembly | GO:0043244 | 28 | 0.087 | |
| genitalia development | GO:0048806 | 37 | 0.085 | |
| endocytosis | GO:0006897 | 168 | 0.083 | |
| protein localization to nucleus | GO:0034504 | 121 | 0.081 | |
| purine ribonucleoside catabolic process | GO:0046130 | 205 | 0.080 | |
| regulation of mrna processing | GO:0050684 | 41 | 0.080 | Rat |
| organic cyclic compound catabolic process | GO:1901361 | 295 | 0.080 | |
| nucleoside phosphate metabolic process | GO:0006753 | 338 | 0.077 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 155 | 0.075 | |
| purine nucleotide metabolic process | GO:0006163 | 302 | 0.072 | |
| mrna transport | GO:0051028 | 13 | 0.070 | |
| regulation of alternative mrna splicing via spliceosome | GO:0000381 | 8 | 0.070 | Rat |
| regulation of mrna metabolic process | GO:1903311 | 43 | 0.068 | Rat |
| gonad development | GO:0008406 | 141 | 0.068 | |
| dna metabolic process | GO:0006259 | 303 | 0.063 | |
| nucleoside phosphate biosynthetic process | GO:1901293 | 79 | 0.063 | |
| protein import into nucleus | GO:0006606 | 95 | 0.056 | |
| ribose phosphate metabolic process | GO:0019693 | 291 | 0.056 | |
| nitrogen compound transport | GO:0071705 | 271 | 0.056 | |
| body morphogenesis | GO:0010171 | 45 | 0.055 | |
| germ cell development | GO:0007281 | 185 | 0.055 | |
| nucleic acid phosphodiester bond hydrolysis | GO:0090305 | 49 | 0.054 | |
| purine containing compound metabolic process | GO:0072521 | 311 | 0.054 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 226 | 0.054 | |
| mitotic cell cycle | GO:0000278 | 195 | 0.053 | |
| hematopoietic progenitor cell differentiation | GO:0002244 | 143 | 0.052 | Mouse |
| gene silencing | GO:0016458 | 38 | 0.051 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 199 | 0.049 | |
| nucleoside metabolic process | GO:0009116 | 246 | 0.048 | |
| negative regulation of dna templated transcription termination | GO:0060567 | 1 | 0.047 | |
| receptor mediated endocytosis | GO:0006898 | 51 | 0.046 | |
| ribonucleotide metabolic process | GO:0009259 | 291 | 0.046 | |
| ribonucleoside metabolic process | GO:0009119 | 245 | 0.046 | |
| ribonucleotide catabolic process | GO:0009261 | 208 | 0.044 | |
| regulation of cell cycle | GO:0051726 | 281 | 0.044 | |
| single organism nuclear import | GO:1902593 | 95 | 0.043 | |
| regulation of meiotic cell cycle | GO:0051445 | 34 | 0.043 | |
| dna repair | GO:0006281 | 107 | 0.042 | |
| cellular response to dna damage stimulus | GO:0006974 | 207 | 0.041 | |
| oocyte anterior posterior axis specification | GO:0007314 | 2 | 0.041 | |
| regulation of cellular response to stress | GO:0080135 | 159 | 0.040 | |
| glycosyl compound metabolic process | GO:1901657 | 246 | 0.036 | |
| protein import | GO:0017038 | 101 | 0.036 | |
| transmembrane receptor protein tyrosine kinase signaling pathway | GO:0007169 | 247 | 0.034 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 199 | 0.033 | |
| rna catabolic process | GO:0006401 | 29 | 0.032 | |
| positive regulation of nucleotide metabolic process | GO:0045981 | 114 | 0.032 | |
| purine containing compound catabolic process | GO:0072523 | 213 | 0.032 | |
| nucleotide catabolic process | GO:0009166 | 217 | 0.032 | |
| poly a mrna export from nucleus | GO:0016973 | 4 | 0.032 | |
| muscle contraction | GO:0006936 | 101 | 0.032 | |
| regulation of purine nucleotide catabolic process | GO:0033121 | 122 | 0.031 | |
| regulation of cellular component biogenesis | GO:0044087 | 181 | 0.031 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 220 | 0.031 | |
| nuclear export | GO:0051168 | 34 | 0.030 | |
| cardiac muscle contraction | GO:0060048 | 32 | 0.030 | |
| regulation of ras protein signal transduction | GO:0046578 | 114 | 0.030 | |
| striated muscle contraction | GO:0006941 | 45 | 0.029 | |
| ras protein signal transduction | GO:0007265 | 77 | 0.029 | |
| oocyte construction | GO:0007308 | 2 | 0.029 | |
| purine nucleoside catabolic process | GO:0006152 | 205 | 0.028 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 183 | 0.028 | |
| muscle system process | GO:0003012 | 141 | 0.028 | |
| heart contraction | GO:0060047 | 93 | 0.028 | |
| nucleoside phosphate catabolic process | GO:1901292 | 222 | 0.027 | |
| intracellular protein transport | GO:0006886 | 204 | 0.027 | |
| positive regulation of cell cycle process | GO:0090068 | 61 | 0.027 | |
| meiotic cell cycle | GO:0051321 | 122 | 0.027 | |
| 3 utr mediated mrna stabilization | GO:0070935 | 2 | 0.027 | |
| ribonucleoside monophosphate metabolic process | GO:0009161 | 80 | 0.027 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 203 | 0.027 | |
| organonitrogen compound catabolic process | GO:1901565 | 264 | 0.026 | |
| mrna export from nucleus | GO:0006406 | 11 | 0.026 | |
| negative regulation of molecular function | GO:0044092 | 258 | 0.025 | |
| purine ribonucleotide catabolic process | GO:0009154 | 208 | 0.025 | |
| regulation of intracellular transport | GO:0032386 | 159 | 0.024 | |
| blood circulation | GO:0008015 | 195 | 0.024 | |
| protein localization to organelle | GO:0033365 | 185 | 0.024 | |
| regulation of kinase activity | GO:0043549 | 249 | 0.024 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 352 | 0.024 | |
| neuron projection guidance | GO:0097485 | 141 | 0.024 | |
| organelle fission | GO:0048285 | 170 | 0.024 | |
| regulation of protein localization | GO:0032880 | 231 | 0.024 | |
| dna templated transcription termination | GO:0006353 | 4 | 0.023 | |
| negative regulation of rna splicing | GO:0033119 | 12 | 0.023 | Rat |
| positive regulation of dna templated transcription elongation | GO:0032786 | 2 | 0.023 | |
| establishment of organelle localization | GO:0051656 | 122 | 0.022 | |
| positive regulation of hydrolase activity | GO:0051345 | 148 | 0.022 | |
| meiotic nuclear division | GO:0007126 | 115 | 0.022 | |
| nucleoside monophosphate metabolic process | GO:0009123 | 85 | 0.022 | |
| nuclear import | GO:0051170 | 95 | 0.022 | |
| establishment of protein localization to organelle | GO:0072594 | 118 | 0.022 | |
| rna export from nucleus | GO:0006405 | 15 | 0.022 | |
| intracellular mrna localization | GO:0008298 | 4 | 0.022 | |
| fertilization | GO:0009566 | 127 | 0.022 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 230 | 0.022 | |
| regulation of reproductive process | GO:2000241 | 66 | 0.021 | |
| nucleotide biosynthetic process | GO:0009165 | 78 | 0.021 | |
| small gtpase mediated signal transduction | GO:0007264 | 97 | 0.020 | |
| cellular amino acid metabolic process | GO:0006520 | 103 | 0.020 | |
| mitotic nuclear division | GO:0007067 | 48 | 0.020 | |
| ribonucleoside monophosphate catabolic process | GO:0009158 | 57 | 0.020 | |
| purine containing compound biosynthetic process | GO:0072522 | 70 | 0.020 | |
| regulation of cell cycle process | GO:0010564 | 160 | 0.020 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 28 | 0.020 | Rat |
| maternal determination of anterior posterior axis embryo | GO:0008358 | 2 | 0.019 | |
| ribonucleoside catabolic process | GO:0042454 | 206 | 0.019 | |
| negative regulation of phosphorus metabolic process | GO:0010563 | 184 | 0.019 | |
| b cell activation | GO:0042113 | 161 | 0.019 | |
| nuclear transcribed mrna catabolic process nonsense mediated decay | GO:0000184 | 1 | 0.019 | |
| carbohydrate derivative catabolic process | GO:1901136 | 231 | 0.019 | |
| negative regulation of phosphate metabolic process | GO:0045936 | 184 | 0.019 | |
| regulation of mapk cascade | GO:0043408 | 248 | 0.019 | |
| macromolecular complex disassembly | GO:0032984 | 43 | 0.019 | |
| organelle localization | GO:0051640 | 179 | 0.018 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 220 | 0.018 | |
| cell type specific apoptotic process | GO:0097285 | 268 | 0.018 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 205 | 0.018 | |
| glycosyl compound catabolic process | GO:1901658 | 206 | 0.018 | |
| organophosphate biosynthetic process | GO:0090407 | 122 | 0.018 | |
| purine ribonucleoside monophosphate metabolic process | GO:0009167 | 80 | 0.018 | |
| maturation of ssu rrna | GO:0030490 | 1 | 0.017 | |
| circulatory system process | GO:0003013 | 197 | 0.017 | |
| somatic diversification of immunoglobulins | GO:0016445 | 43 | 0.017 | |
| atp catabolic process | GO:0006200 | 55 | 0.017 | |
| regulation of nuclear division | GO:0051783 | 56 | 0.017 | |
| myeloid cell differentiation | GO:0030099 | 233 | 0.017 | |
| skin development | GO:0043588 | 220 | 0.016 | |
| regulation of nucleocytoplasmic transport | GO:0046822 | 73 | 0.016 | |
| nuclear division | GO:0000280 | 158 | 0.016 | |
| purine ribonucleoside metabolic process | GO:0046128 | 241 | 0.016 | |
| negative regulation of cell proliferation | GO:0008285 | 296 | 0.016 | |
| pole plasm assembly | GO:0007315 | 2 | 0.016 | |
| positive regulation of programmed cell death | GO:0043068 | 218 | 0.015 | |
| segmentation | GO:0035282 | 93 | 0.015 | |
| single fertilization | GO:0007338 | 82 | 0.015 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 5 | 0.015 | |
| positive regulation of protein modification process | GO:0031401 | 299 | 0.015 | |
| camera type eye development | GO:0043010 | 266 | 0.015 | |
| atp metabolic process | GO:0046034 | 75 | 0.015 | |
| oogenesis | GO:0048477 | 56 | 0.015 | |
| purine nucleoside metabolic process | GO:0042278 | 241 | 0.014 | |
| ribose phosphate biosynthetic process | GO:0046390 | 59 | 0.014 | |
| regulation of translation | GO:0006417 | 71 | 0.014 | |
| regulation of hydrolase activity | GO:0051336 | 246 | 0.014 | |
| purine nucleoside monophosphate catabolic process | GO:0009128 | 58 | 0.014 | |
| translation | GO:0006412 | 93 | 0.014 | |
| transcription coupled nucleotide excision repair | GO:0006283 | 2 | 0.014 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 192 | 0.014 | |
| nucleoside catabolic process | GO:0009164 | 206 | 0.013 | |
| regulation of cell division | GO:0051302 | 76 | 0.013 | |
| maturation of 5 8s rrna from tricistronic rrna transcript ssu rrna 5 8s rrna lsu rrna | GO:0000466 | 1 | 0.013 | |
| positive regulation of mrna splicing via spliceosome | GO:0048026 | 11 | 0.013 | Rat |
| hematopoietic stem cell differentiation | GO:0060218 | 8 | 0.013 | |
| regulation of nucleotide metabolic process | GO:0006140 | 169 | 0.013 | |
| purine ribonucleotide metabolic process | GO:0009150 | 290 | 0.013 | |
| axonogenesis | GO:0007409 | 274 | 0.013 | |
| regulation of neuron projection development | GO:0010975 | 169 | 0.013 | |
| macromolecule catabolic process | GO:0009057 | 281 | 0.013 | |
| spindle organization | GO:0007051 | 28 | 0.013 | |
| rna interference | GO:0016246 | 2 | 0.013 | |
| negative regulation of mrna processing | GO:0050686 | 12 | 0.013 | Rat |
| axon guidance | GO:0007411 | 141 | 0.012 | |
| lamellipodium organization | GO:0097581 | 29 | 0.012 | |
| amine metabolic process | GO:0009308 | 45 | 0.012 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 247 | 0.012 | |
| purine ribonucleoside monophosphate catabolic process | GO:0009169 | 57 | 0.012 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 207 | 0.012 | |
| regulation of cell projection organization | GO:0031344 | 206 | 0.012 | |
| hypophysis morphogenesis | GO:0048850 | 3 | 0.012 | |
| symbiosis encompassing mutualism through parasitism | GO:0044403 | 83 | 0.012 | |
| apoptotic signaling pathway | GO:0097190 | 306 | 0.012 | |
| positive regulation of transcription elongation from rna polymerase ii promoter | GO:0032968 | 2 | 0.012 | |
| transmembrane receptor protein serine threonine kinase signaling pathway | GO:0007178 | 194 | 0.012 | |
| regulation of nucleoside metabolic process | GO:0009118 | 130 | 0.011 | |
| regulation of intracellular protein transport | GO:0033157 | 82 | 0.011 | |
| regulation of transferase activity | GO:0051338 | 263 | 0.011 | |
| striated muscle myosin thick filament assembly | GO:0071688 | 1 | 0.011 | |
| regulation of cytoplasmic transport | GO:1903649 | 112 | 0.011 | |
| ossification | GO:0001503 | 216 | 0.011 | |
| histone modification | GO:0016570 | 159 | 0.011 | |
| cellular macromolecule catabolic process | GO:0044265 | 206 | 0.011 | |
| regulation of purine nucleotide metabolic process | GO:1900542 | 169 | 0.011 | |
| positive regulation of protein phosphorylation | GO:0001934 | 242 | 0.011 | |
| positive regulation of cell cycle phase transition | GO:1901989 | 17 | 0.011 | |
| blood vessel morphogenesis | GO:0048514 | 285 | 0.011 | |
| regulation of rna stability | GO:0043487 | 26 | 0.011 | |
| dephosphorylation | GO:0016311 | 129 | 0.011 | |
| compound eye development | GO:0048749 | 1 | 0.011 | |
| dna damage checkpoint | GO:0000077 | 26 | 0.010 | |
| mapk cascade | GO:0000165 | 281 | 0.010 | |
| neuron death | GO:0070997 | 154 | 0.010 | |
| snorna metabolic process | GO:0016074 | 1 | 0.010 | |
| molting cycle | GO:0042303 | 90 | 0.010 | |
